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Appl Environ Microbiol, January 1998, p. 226-230, Vol. 64, No. 1
Department of Biology, Utah State University,
Logan, Utah 84322-5305
Received 11 August 1997/Accepted 27 October 1997
Many strains of Pseudomonas syringae pv. syringae
produce one of four classes of small cyclic lipodepsinonapeptides:
syringomycins, syringostatins, syringotoxins, or pseudomycins. These
metabolites are phytotoxic and growth inhibitory against a broad
spectrum of fungi. Their production is dependent upon the expression of conserved biosynthesis and export genes syrB and
syrD, respectively. PCR and oligonucleotide primers
specific for a 752-bp fragment of syrB were used to
identify cyclic lipodepsinonapeptide-producing strains of P. syringae pv. syringae. In contrast, PCR amplification with
primers based on syrD did not always correlate with
possession of the syrD gene, as indicated by Southern blot
analysis, or with cyclic lipodepsinonapeptide production. Sequence
comparisons of 400 nucleotides from the syrB PCR-amplified
fragments showed 94% plot similarity among 27 strains. In a sequence
phenogram, syringostatin and syringotoxin producers were grouped apart
from syringomycin-producing strain B301D, with sequences that differed
by eight and nine conserved base substitutions, respectively. PCR
amplification of the 752-bp syrB fragment offers rapid and
accurate detection of cyclic lipodepsinonapeptide-producing strains,
and its sequence provides some predictive capabilities for identifying
syringotoxin and syringostatin producers.
0099-2240/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
PCR Detection of Cyclic
Lipodepsinonapeptide-Producing Pseudomonas syringae pv.
syringae and Similarity of Strains
*
Corresponding author. Mailing address: Department of
Biology, Utah State University, Logan, UT 84322-5305. Phone: (435)
797-1909. Fax: (435) 797-1575. E-mail:
Takemoto{at}cc.usu.edu.
Journal paper 6020 of the Utah Agricultural Experiment Station.
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