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Applied and Environmental Microbiology, October 2000, p. 4212-4221, Vol. 66, No. 10
School of Applied Sciences, South Bank
University, London,1 and MRC
Microbiology and Gut Biology Group, University of Dundee, Dundee,
Scotland,2 United Kingdom
Received 18 February 2000/Accepted 8 July 2000
Resistant starch (RS) enrichments were made using chemostats
inoculated with human feces from two individuals at two dilution rates
(D = 0.03 h
0099-2240/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Chemostat Enrichments of Human Feces with Resistant
Starch Are Selective for Adherent Butyrate-Producing Clostridia at
High Dilution Rates
1 and D = 0.30 h
1) to select for slow- and fast-growing amylolytic
communities. The fermentations were studied by analysis of short-chain
fatty acids, amylase and
-glucosidase activities, and viable counts of the predominant culturable populations and the use of 16S
rRNA-targeted oligonucleotide probes. Considerable butyrate was
produced at D = 0.30 h
1, which
corresponded with reduced branched-chain fatty acid formation. At both
dilution rates, high levels of extracellular amylase activity were
produced, while
-glucosidase was predominantly cell associated. Bacteroides and bifidobacteria predominated at the low dilution rate,
whereas saccharolytic clostridia became more important at D = 0.30 h
1. Microscopic examination
showed that within 48 h of inoculation, one particular bacterial
morphotype predominated in RS enrichments at D = 0.30 h
1. This organism attached apically to RS granules and
formed rosette-like structures which, with glycocalyx formation,
agglomerated to form biofilm networks in the planktonic phase. Attempts
to isolate this bacterium in pure culture were repeatedly unsuccessful,
although a single colony was eventually obtained. On the basis of its
16S rDNA sequence, this RS-degrading, butyrate-producing organism was
identified as being a previously unidentified group I
Clostridium sp. A 16S rRNA-targeted probe was designed
using this sequence and used to assess the abundance of the population
in the enrichments. At 240 h, its contributions to total rRNA in
the chemostats were 5 and 23% at D = 0.03 and 0.30 h
1, respectively. This study indicates that bacterial
populations with significant metabolic potential can be overlooked
using culture-based methodologies. This may provide a paradigm for
explaining the discrepancy between the low numbers of
butyrate-producing bacteria that are isolated from fecal samples and
the actual production of butyrate.
*
Corresponding author. Mailing address: School of
Applied Sciences, South Bank University, 103 Borough Rd., London SE1
0AA, United Kingdom. Phone: 44-171-815-7923. Fax: 44-0171-815-7999. E-mail: sharpr{at}sbu.ac.uk.
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