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Applied and Environmental Microbiology, November 2001, p. 4999-5009, Vol. 67, No. 11
Institute of Genetic
Ecology1 and Bio-oriented Technology
Research Advancement Institution (BRAIN), Institute of Genetic
Ecology,2 Tohoku University, Katahira, Aoba-ku,
Sendai 980-8577, and Institute of Agriculture and Forestry,
Gene Experiment Center, University of Tsukuba, Tsukuba
305-8572,3 Japan
Received 4 June 2001/Accepted 31 August 2001
We cloned and sequenced a cluster of genes involved in the
biosynthesis of rhizobitoxine, a nodulation enhancer produced
by Bradyrhizobium elkanii. The nucleotide sequence of
the cloned 28.4-kb DNA region encompassing rtxA
showed that several open reading frames (ORFs) were located downstream
of rtxA. A large-deletion mutant of B.
elkanii, USDA94
0099-2240/01/$04.00+0 DOI: 10.1128/AEM.67.11.4999-5009.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
DNA Sequence and Mutational Analysis of
Rhizobitoxine Biosynthesis Genes in Bradyrhizobium
elkanii


rtx::
1, which
lacks rtxA, ORF1 (rtxC), ORF2, and ORF3,
did not produce rhizobitoxine, dihydrorhizobitoxine, or serinol.
The broad-host-range cosmid pLAFR1, which contains rtxA
and these ORFs, complemented rhizobitoxine production in USDA94
rtx::
1. Further complementation
experiments involving cosmid derivatives obtained by random mutagenesis
with a kanamycin cassette revealed that at least rtxA
and rtxC are necessary for rhizobitoxine production.
Insertional mutagenesis of the N-terminal and C-terminal regions of
rtxA indicated that rtxA is responsible for two crucial steps, serinol formation and dihydrorhizobitoxine biosynthesis. An insertional mutant of rtxC produced
serinol and dihydrorhizobitoxine but no rhizobitoxine. Moreover, the
rtxC product was highly homologous to the fatty
acid desaturase of Pseudomonas syringae and
included the copper-binding signature and eight histidine residues
conserved in membrane-bound desaturase. This result suggested that
rtxC encodes dihydrorhizobitoxine desaturase for the
final step of rhizobitoxine production. In light of results from DNA
sequence comparison, gene disruption experiments, and dihydrorhizobitoxine production from various substrates, we discuss the
biosynthetic pathway of rhizobitoxine and its evolutionary significance
in bradyrhizobia.
*
Corresponding author. Mailing address: Institute of
Genetic Ecology, Tohoku University, Katahira, Aoba-ku, Sendai 980-8577, Japan. Phone: 81-22-217-5684. Fax: 81-22-263-9845. E-mail:
kiwamu{at}ige.tohoku.ac.jp.
Present address: Research Center for Advanced Waste and Emission
Management, Nagoya University, Chikusa-ku, Nagoya, Aichi 464-8603, Japan.
Present address: Plant Biotechnology Institute, Ibaraki
Agriculture Center, Ago, Iwama, Nishi-Ibaraki 319-0292, Japan.
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