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Applied and Environmental Microbiology, May 2001, p. 2354-2359, Vol. 67, No. 5
0099-2240/01/$04.00+0   DOI: 10.1128/AEM.67.5.2354-2359.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.

DNA Extraction from Soils: Old Bias for New Microbial Diversity Analysis Methods

F. Martin-Laurent,* L. Philippot, S. Hallet, R. Chaussod, J. C. Germon, G. Soulas, and G. Catroux

UMR INRA MS Geosol, CMSE-INRA, 21034 Dijon Cedex, France

Received 11 December 2000/Accepted 12 February 2001

The impact of three different soil DNA extraction methods on bacterial diversity was evaluated using PCR-based 16S ribosomal DNA analysis. DNA extracted directly from three soils showing contrasting physicochemical properties was subjected to amplified ribosomal DNA restriction analysis and ribosomal intergenic spacer analysis (RISA). The obtained RISA patterns revealed clearly that both the phylotype abundance and the composition of the indigenous bacterial community are dependent on the DNA recovery method used. In addition, this effect was also shown in the context of an experimental study aiming to estimate the impact on soil biodiversity of the application of farmyard manure or sewage sludge onto a monoculture of maize for 15 years.

* Corresponding author. Mailing address: UMR INRA MS Geosol, CMSE-INRA, 17 rue Sully, 21034 Dijon Cedex, France. Phone: (33) 03 80 69 31 06. Fax: (33) 03 80 69 32 24. E-mail: fmartin{at}dijon.inra.fr.

Applied and Environmental Microbiology, May 2001, p. 2354-2359, Vol. 67, No. 5
0099-2240/01/$04.00+0   DOI: 10.1128/AEM.67.5.2354-2359.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.


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