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Applied and Environmental Microbiology, June 2001, p. 2469-2475, Vol. 67, No. 6
0099-2240/01/$04.00+0   DOI: 10.1128/AEM.67.6.2469-2475.2001

Selection of Specific Endophytic Bacterial Genotypes by Plants in Response to Soil Contamination

Steven D. Siciliano,1,dagger Nathalie Fortin,1 Anca Mihoc,1 Gesine Wisse,1 Suzanne Labelle,1 Danielle Beaumier,1 Danielle Ouellette,1 Real Roy,1 Lyle G. Whyte,1 M. Kathy Banks,2 Paul Schwab,3 Ken Lee,4 and Charles W. Greer1,*

Biotechnology Research Institute, National Research Council Canada, Montreal, Quebec,1 and Fisheries and Oceans Canada, Dartmouth, Nova Scotia,4 Canada, and School of Civil Engineering2 and School of Agronomy,3 Purdue University, West LaFayette, Indiana

Received 2 November 2000/Accepted 18 March 2001

Plant-bacterial combinations can increase contaminant degradation in the rhizosphere, but the role played by indigenous root-associated bacteria during plant growth in contaminated soils is unclear. The purpose of this study was to determine if plants had the ability to selectively enhance the prevalence of endophytes containing pollutant catabolic genes in unrelated environments contaminated with different pollutants. At petroleum hydrocarbon contaminated sites, two genes encoding hydrocarbon degradation, alkane monooxygenase (alkB) and naphthalene dioxygenase (ndoB), were two and four times more prevalent in bacteria extracted from the root interior (endophytic) than from the bulk soil and sediment, respectively. In field sites contaminated with nitroaromatics, two genes encoding nitrotoluene degradation, 2-nitrotoluene reductase (ntdAa) and nitrotoluene monooxygenase (ntnM), were 7 to 14 times more prevalent in endophytic bacteria. The addition of petroleum to sediment doubled the prevalence of ndoB-positive endophytes in Scirpus pungens, indicating that the numbers of endophytes containing catabolic genotypes were dependent on the presence and concentration of contaminants. Similarly, the numbers of alkB- or ndoB-positive endophytes in Festuca arundinacea were correlated with the concentration of creosote in the soil but not with the numbers of alkB- or ndoB-positive bacteria in the bulk soil. Our results indicate that the enrichment of catabolic genotypes in the root interior is both plant and contaminant dependent.


* Corresponding author. Mailing address: Biotechnology Research Institute, National Research Council Canada, 6100 Royalmount Ave., Montreal, Quebec, Canada. Phone: 514-496-6182. Fax: 514-496-6265. E-mail: charles.greer{at}nrc.ca.

dagger Present address: Department of Biology, University of Ottawa, Ottawa, Canada.


Applied and Environmental Microbiology, June 2001, p. 2469-2475, Vol. 67, No. 6
0099-2240/01/$04.00+0   DOI: 10.1128/AEM.67.6.2469-2475.2001



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