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Applied and Environmental Microbiology, November 2005, p. 7556-7558, Vol. 71, No. 11
0099-2240/05/$08.00+0 doi:10.1128/AEM.71.11.7556-7558.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
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Department of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, Indiana 47907,1 Department of Biology, Indiana University, 1001 East Third Street, Bloomington, Indiana 47405-3700,2 Laboratory for Ecology of Symbiotic and Associative Rhizobacteria, All-Russia Research Institute for Agricultural Microbiology, Sh. Podbelskogo 3, Pushkin 196608, Saint Petersburg, Russian Federation,3 Department of Biology, University of Waterloo, 200 University Ave. West, Waterloo, Ontario N2L 3G1, Canada4
Received 12 April 2005/ Accepted 5 July 2005
PCR was used to rapidly identify and isolate 1-aminocyclopropane-1-carboxylate (ACC) deaminase genes from bacteria. The Shimodaira-Hasegawa test was used to assess whether phylogenetically anomalous gene placements suggestive of horizontal gene transfer (HGT) were significantly favored over vertical transmission. The best maximum likelihood (ML) ACC deaminase tree was significantly more likely than four alternative ML trees, suggesting HGT.
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