Applied and Environmental Microbiology, November 2007, p. 7118-7121, Vol. 73, No. 21
0099-2240/07/$08.00+0 doi:10.1128/AEM.00911-07
Copyright © 2007, American Society for Microbiology. All Rights Reserved.

Department of Biological Sciences, The University of Southern Mississippi, Hattiesburg, Mississippi 39406,1 Department of Geography and Geology, The University of Southern Mississippi, Hattiesburg, Mississippi 394062
Received 23 April 2007/ Accepted 30 August 2007
A PCR-based assay (Mrnif) targeting the nifH gene of Methanobrevibacter ruminantium was developed to detect fecal pollution from domesticated ruminants in environmental water samples. The assay produced the expected amplification product only when the reaction mixture contained DNA extracted from M. ruminantium culture, bovine (80%), sheep (100%), and goat (75%) feces, and water samples from a bovine waste lagoon (100%) and a creek contaminated with bovine lagoon waste (100%). The assay appears to be specific and sensitive and can distinguish between domesticated- and nondomesticated-ruminant fecal pollution in environmental samples.
Published ahead of print on 7 September 2007.
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