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Applied and Environmental Microbiology, June 2009, p. 3419-3429, Vol. 75, No. 11
0099-2240/09/$08.00+0     doi:10.1128/AEM.02912-08
Copyright © 2009, American Society for Microbiology. All Rights Reserved.

Identification and Functional Analysis of the Gene Cluster for L-Arabinose Utilization in Corynebacterium glutamicum{triangledown} ,{dagger}

Hideo Kawaguchi,{ddagger} Miho Sasaki,{ddagger} Alain A. Vertès, Masayuki Inui, and Hideaki Yukawa*

Research Institute of Innovative Technology for the Earth, 9-2 Kizugawadai, Kizugawa-shi, Kyoto 619-0292, Japan

Received 21 December 2008/ Accepted 26 March 2009

Corynebacterium glutamicum ATCC 31831 grew on L-arabinose as the sole carbon source at a specific growth rate that was twice that on D-glucose. The gene cluster responsible for L-arabinose utilization comprised a six-cistron transcriptional unit with a total length of 7.8 kb. Three L-arabinose-catabolizing genes, araA (encoding L-arabinose isomerase), araB (L-ribulokinase), and araD (L-ribulose-5-phosphate 4-epimerase), comprised the araBDA operon, upstream of which three other genes, araR (LacI-type transcriptional regulator), araE (L-arabinose transporter), and galM (putative aldose 1-epimerase), were present in the opposite direction. Inactivation of the araA, araB, or araD gene eliminated growth on L-arabinose, and each of the gene products was functionally homologous to its Escherichia coli counterpart. Moreover, compared to the wild-type strain, an araE disruptant exhibited a >80% decrease in the growth rate at a lower concentration of L-arabinose (3.6 g liter–1) but not at a higher concentration of L-arabinose (40 g liter–1). The expression of the araBDA operon and the araE gene was L-arabinose inducible and negatively regulated by the transcriptional regulator AraR. Disruption of araR eliminated the repression in the absence of L-arabinose. Expression of the regulon was not repressed by D-glucose, and simultaneous utilization of L-arabinose and D-glucose was observed in aerobically growing wild-type and araR deletion mutant cells. The regulatory mechanism of the L-arabinose regulon is, therefore, distinct from the carbon catabolite repression mechanism in other bacteria.


* Corresponding author. Mailing address: Research Institute of Innovative Technology for the Earth, 9-2 Kizugawadai, Kizugawa-shi, Kyoto 619-0292, Japan. Phone: 81-774-75-2308. Fax: 81-774-72-2321. E-mail: mmg-lab{at}rite.or.jp

{triangledown} Published ahead of print on 3 April 2009.

{dagger} Supplemental material for this article may be found at http://aem.asm.org/.

{ddagger} H.K. and M.S. contributed equally to this work.


Applied and Environmental Microbiology, June 2009, p. 3419-3429, Vol. 75, No. 11
0099-2240/09/$08.00+0     doi:10.1128/AEM.02912-08
Copyright © 2009, American Society for Microbiology. All Rights Reserved.