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Appl Environ Microbiol, January 1998, p. 172-177, Vol. 64, No. 1
Department of Natural Resources, Cornell
University, Ithaca, New York 14853
Received 6 June 1997/Accepted 21 October 1997
Isoprene (2-methyl-1,3 butadiene) is a low-molecular-weight
hydrocarbon emitted in large quantities to the atmosphere by vegetation and plays a large role in regulating atmospheric chemistry. Until now,
the atmosphere has been considered the only significant sink for
isoprene. However, in this study we performed both in situ and in vitro
experiments with soil from a temperate forest near Ithaca, N.Y., that
indicate that the soil provides a sink for atmospheric isoprene and
that the consumption of isoprene is carried out by microorganisms.
Consumption occurred rapidly in field chambers (672.60 ± 30.12 to
2,718.36 ± 86.40 pmol gdw Isoprene (2-methyl-1,3 butadiene
[C5H8]), is a low-molecular-weight alkene
hydrocarbon emitted to the atmosphere by many plant species (13,
16, 18). Isoprene emission by vegetation is estimated at 5 × 1014 g year One significant sink for many atmospheric trace gases (e.g.,
H2, CO, CH4, OCS, NO, and N2O) is
soil. These gases serve as electron donors in oxidation reactions
and/or as an energy source for microorganisms, which help moderate the
chemical composition of the atmosphere (9). For example,
Bender and Conrad showed that the oxidation of atmospheric methane in
soil is a significant portion of the global CH4 budget,
amounting to 5 to 20% of the total global CH4 sink
(5). Similarly, Shorter et al. showed that soil
microorganisms strongly influence atmospheric methyl bromide
(CH3Br) concentrations by acting as a sink (33).
Although ambient concentrations of CH3Br are ~1,000 times
less than isoprene concentrations, the amount of this compound consumed
by soil is estimated at 4.2 × 1010 g
year The possibility of a biological sink for isoprene in soil has never
been investigated. Van Ginkel et al. showed that pure cultures of a
Nocardia sp. were able to degrade isoprene and to use the
compound as their sole carbon and energy source, but the intricacies
and potential significance of the process were not explored
(35). Additionally, Hou et al. suggested that propene-grown Xanthobacter spp. and methanotrophs were able to oxidize
isoprene but that it did not serve as the sole carbon and energy source (21). However, these studies offer very little insight into the importance of isoprene consumption in situ and provide little information on the physiological controls on the process. In this paper
we describe the results of both in situ and in vitro investigations of
isoprene consumption by soil microorganisms in a temperate forest soil.
Our findings suggest that microorganisms consume isoprene even at
trace-level concentrations and that soil microorganisms may
provide a significant, previously undocumented biological sink for
atmospheric isoprene.
We measured isoprene consumption in soil from McGowan Woodlot, a
24-acre temperate mixed-hardwoods forest located near Ithaca, N.Y.
(42°25'N, 76°28'W). The soil at McGowan Woodlot is classified as a
mesic Glossoboric Hapludalf (Alfisol) with a pH of 5.8 to 6.0. Soil
organic matter content ranges from 9.3% in the 0- to 3-cm depth
interval (from horizon) to 6.5% in the 9- to 12-cm depth interval
(from horizon). The soil has an average bulk density of 1.18 g
cm We measured isoprene flux in the field using semitransparant
polyethelene static chambers. The circular chambers had a diameter of
18 cm and a total volume of 1.4 liters. Each chamber was fitted with a
butyl-rubber septum for gas sampling. On each visit, we removed leaves
from the soil surface, placed the five chambers randomly on the soil to
a depth of ~3 cm, and packed soil around the outside of each chamber
to prevent leakage. On each visit, all chambers were placed within an
area of 100 m2. An aliquot of an isoprene standard was
injected into each chamber and was mixed thoroughly, and we then
collected gas samples in 1-ml glass, gastight syringes every 15 min for
1 h. In most cases, the initial headspace concentration was ~385
ppb. Measurements were made in the same general area on each visit, but
we repositioned chambers to avoid previously disturbed locations.
Standards were also prepared in the field and sampled at the beginning
and end of each experiment. This was done to verify that the removal of isoprene in the chambers was not due to chemical reactions with oxidizing radicals in the atmosphere. We reasoned that if
concentrations in the standards (which are presumably influenced only
by chemical oxidations in the atmosphere of the standard vessels) did
not decrease over the course of each experiment then we could conclude that chemical oxidation in the atmospheres of the chambers was negligible. In addition, on each visit we measured soil temperature to
a depth of 5 cm with a thermistor and we measured soil moisture gravimetrically. Sampling occurred on five dates during the summer of
1996 (6 June, 12 June, 22 July, 12 September, and 1 October), and gas
samples were analyzed within 2 h of collection.
Soil cores 15 to 18 cm in length were collected from the McGowan
Woodlot site in polyvinyl chloride tubes (inside diameter, 10 cm; wall
thickness, 4 mm) by removing the forest litter, cutting around the
perimeter with a knife, and tapping the tube with a rubber mallet.
After extraction, the top and bottom of each core was sealed with a
rubber cap: the top cap had a butyl-rubber septum for gas sampling. A
headspace of ~785 cm3 was left after sealing the tubes.
Repeat additions of isoprene were made at different times to the closed
vessels to achieve final concentrations of 100 to 650 ppb, and cores
were incubated in the dark at 25°C. We collected gas samples from the
headspace every 15 min until the isoprene concentration was <5 ppb.
Vessels were then opened to reaerate the headspaces, and the experiment was repeated. Experiments were initiated within 2 h of collection of the soil cores.
Bulk soil samples were obtained at 3-cm intervals to a depth of 12 cm
from McGowan Woodlot. Bulk soil samples were brought to the laboratory,
all stones and plant material were removed, and soils were sieved to
aggregate sizes of <4 mm. Following collection, 30- to 35-g samples of
each soil were placed in 1-liter mason jars to provide a soil layer of
~0.5 cm. Soil water content was adjusted to 40% (dry weight),
vessels were sealed, and initial isoprene headspace concentrations were
adjusted to 508 ppb. Jar lids had a butyl-rubber septum for gas
sampling and were sampled for 12 h to determine the time course of
isoprene consumption in soil. Unless otherwise indicated, soil
incubations were performed in the dark at 25°C. To verify biological
rather than physical consumption of isoprene, a set of soil samples
were autoclaved three times for 1 h at 120°C and 0.10 MPa (15 lb/in Isoprene consumption as a function of soil temperature.
The
effect of temperature on isoprene consumption was determined by
preincubating fresh soil from McGowan Woodlot at treatment temperatures
for 24 h (40% soil moisture [SM]) to ensure that the samples
were at the desired temperature at the time of the experiment. The
vessels were then injected with an aliquot of isoprene standard, and
different samples were incubated for 12 h at 5, 15, 25, 30, 35, 40, and 50°C in temperature incubators or in controlled temperature
water baths. Headspace isoprene concentrations were sampled every
3 h to determine isoprene consumption.
Isoprene consumption as a function of SM.
The effect of SM
content on isoprene consumption was determined by using freshly
collected soil samples from McGowan Woodlot (40% SM [fresh], sieved
to aggregate sizes of <4 mm). SM contents of 5, 10, 25, 40, 60, 75, and 100% were obtained by air drying excessively moist soils or by
adding a mist of sterile, deionized water with a spray bottle to dry
samples. Samples were acclimated for 24 h to the altered SM
content, vessels were sealed and incubated at 25°C with an isoprene
headspace concentration of 508 ppb, and headspaces were samples at 3-h
intervals for 12 h to determine the time course of isoprene
consumption.
Effect of oxygen concentration on isoprene consumption in
soil.
To determine whether the consumption of isoprene in soil is
an aerobic process (i.e., the microorganisms responsible for isoprene consumption require oxygen to mineralize isoprene), incubations were
performed in vessels which had been purged of headspace oxygen (O2). Fresh soil from McGowan Woodlot was placed in
vessels, which were sealed and from which oxygen was removed with a
vacuum pump equipped with a needle to penetrate the septa on the jars.
Pressure inside the vessels was brought to Gas analysis.
Isoprene concentration was measured on a gas
chromatograph (model 3400; Varian Chromatography Systems, Walnut Creek,
Calif.) equipped with a photoionization detector and a 50-m fused
silica column (Megabore SPB-1, 5-µm coating; Supelco, Inc., Supelco
Park, Pa.). The carrier gas was highly purified helium (99.99%). Gas samples were injected on-column by splitless injection. Column temperature was 55°C, and the retention time of the isoprene was 4.5 min with a carrier gas linear velocity of 18.5 cm s Isolation of isoprene-degrading microorganisms.
Soil samples
were collected from the top 1 cm of the soil profile at McGowan
Woodlot. Following collection, serial dilutions of samples were
performed according to the procedure described by Madsen
(25), and dilutions were streaked onto agar plates prepared
with Stanier's Basal Salt Medium (34). Plates were then
divided into two groups and transferred to airtight, stainless steel
containers. One container was equipped with a glass test tube
containing 0.5 ml of 99.9% pure liquid isoprene, which volatilized to
provide a carbon substrate in an oxic headspace. Control plates that
were inoculated but lacked isoprene added as a growth substrate were
incubated in a separate vessel. Plates were incubated at 25°C in the
dark and checked every 3 days until large, prolific colonies were
obvious on plates incubated with volatilized isoprene in the headspace
compared to the growth on control plates (25). Isolated
colonies were quantified according to Madsen (25).
Isoprene flux in the field occurred rapidly to concentrations
below our detection limit within 1 h. Reaction rate constants (k) of isoprene in the chambers ranged from
0099-2240/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Microbial Consumption of Atmospheric Isoprene
in a Temperate Forest Soil
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ABSTRACT
Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References
1 day
1) (gdw
is grams [dry weight] of soil; values are means ± standard deviations). Subsequent laboratory experiments confirmed that isoprene
loss was due to biological processes: consumption was stopped by
autoclaving the soil; consumption rates increased with repeated
exposure to isoprene; and consumption showed a temperature response
consistent with biological activity (with an optimum temperature of
30°C). Isoprene consumption was diminished under low oxygen
conditions (120 ± 7.44 versus 528.36 ± 7.68 pmol
gdw
1 day
1 under ambient O2
concentrations) and showed a strong relationship with soil moisture.
Isoprene-degrading microorganisms were isolated from the site, and
abundance was calculated as 5.8 × 105 ± 3.2 × 105 cells gdw
1. Our results indicate that
soil may provide a significant biological sink for atmospheric
isoprene.
![]()
INTRODUCTION
Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References
1, an amount comparable to
annual global methane (CH4) emissions (6, 17, 18, 22,
27). Atmospheric isoprene strongly influences atmospheric
chemistry (14). In atmospheres enriched in nitrogen oxides
(NOx; NOx = NO,
NO2), reactions with nonmethane hydrocarbons (of which
isoprene is the dominant biogenic species) leads to the production of
ozone via secondary photochemical oxidation reactions (14,
15). In addition, isoprene oxidation in the atmosphere produces
carbon monoxide (CO) (7, 16). Therefore, there is
considerable interest in identifying all potential sources and sinks
for the hydrocarbon.
1 (33). These results demonstrate the
ability of microorganisms to consume atmospheric trace gases at
extremely low concentrations. Because atmospheric isoprene
concentrations, which typically range from 0.5 to 10 ppb (4,
11), are high relative to methyl bromide concentrations, this
suggests the possibility of a potentially significant isoprene sink in
soil.
![]()
MATERIALS AND METHODS
Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References
3 and a total porosity of 57%.
2), and sterile, distilled water was added to
restore the desired soil moisture level. Blanks (no soil) were also
included in each assay to verify that atmospheric oxidation within the
jars was not responsible for declines in isoprene headspace
concentrations and to confirm that the experimental setup was not prone
to leakage. In all cases, experiments were performed within 72 h
of soil collection.
0.3 MPa for 2 min, and
vessel headspaces were then filled to standard pressure with high
purity N2 (99.99%). The process was repeated three times
before the headspace isoprene concentration was amended by using the
premixed isoprene standard. Soils were incubated for 12 h, and
headspace isoprene concentration was sampled every 3 h to
determine isoprene consumption.
1.
Isoprene concentration was determined by peak area measured with a peak
integrator (Shimadzu, model CR 501). The gas chromatograph had a
detection limit of 5 ± 1 ppb and was calibrated daily by using
premixed standards.
![]()
RESULTS
Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References
0.012 ± 0.006 min
1 to
0.048 ± 0.002 min
1
with consumption rates ranging from 672.60 ± 30.12 to
2,718.36 ± 86.40 pmol gdw
1 day
1 (gdw
is g [dry weight] of soil; values are means ± standard
deviations) (Table 1). The diffusive loss
rate of an inert tracer (CH3F) was measured at
0.0016
min
1, indicating that diffusion alone was not responsible
for isoprene loss in the chambers. Flux rates increased gradually
through the summer, with the highest values in late summer (12 September) and values decreasing on the final sampling date (1 October)
following leaf senescence (Table 1).
TABLE 1.
In situ mean (± SD) uptake rate constants (k)
and isoprene flux rates from static field chambers (n = 5) in McGowan Woodlot during the summer of 1996
Laboratory studies indicated that isoprene consumption was biologically mediated: after a 24-h incubation, sterile soil consumed <5% of the isoprene added to the headspace, while >95% of the isoprene added to blanks (no soil) was detectable 24 h later (Fig. 1). In addition, assays performed with leaves only (no soil) showed that consumption of isoprene in the litter layer was negligible (Fig. 1). The results with the experimental controls contrast with results observed with nonsterile soil samples, which showed a linear decrease in isoprene headspace concentration (r2 = 0.96) until concentrations decreased below the detection limit 18 h after the experiment began (Fig. 1).
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Isoprene concentrations in the core segment headspaces were always depleted within 2 h (Fig. 2A). Soil cores consumed isoprene over a sevenfold concentration range with no lag in response regardless of initial isoprene concentration. At all concentrations of isoprene tested the logarithm of the concentration decreased linearly as a function of time (i.e., isoprene consumption in cores was a first-order reaction) (31, 36). The two cores also showed an increasing propensity for isoprene consumption as each series of experiments progressed. In the first experiment, isoprene concentrations decreased from 86.53 to 45.75 ppb and from 63.98 to 45.26 ppb in 0.25 h in cores 1 and 2, respectively. However, after being exposed to isoprene of various concentrations, isoprene concentrations decreased from 692.24 to 442.82 ppb and from 511.8 to 338.65 ppb in 0.25 h in cores 1 and 2, respectively, several hours later (Fig. 2B). The initial depletion rate curves for the two cores show that after exposure to isoprene, the subsequent treatment with a higher isoprene concentration resulted in a more rapid removal of isoprene than in the previous experiment.
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We found that consumption rates decreased monotonically with increasing
soil depth (Table 2). Consumption of
isoprene was most rapid at the surface (0- to 3-cm) soil layer
(585.48 ± 6.94 pmol gdw
1 day
1), while
the other samples from lower profiles showed lower rates of
consumption. A Tukey's test of multiple comparisons showed that
consumption was statistically significantly higher in the 0- to 3-cm
sample than in the 6- to 9-cm sample (t20 = 2.76; P = 0.01) or the 9- to 12-cm sample
(t20 = 2.74; P = 0.01). However, the slopes of the regression lines for the 0- to 3-cm and 3- to 6-cm
samples were not statistically different (t20 = 1.09; P = 0.3).
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Time courses of isoprene consumption (0- to 3-cm depth interval)
at a wide range of temperatures are presented in Fig.
3A. For all treatments (except blanks),
the decrease in isoprene in the headspace was linear; blanks showed no
measurable isoprene loss. Multiple comparisons revealed that
consumption was significantly different at each temperature, with the
exception of the rates at 25 and 30°C, for which regression analysis
revealed no difference (t16 = 1.00;
P = 0.34). Linear regression showed significant, negative slopes at all temperatures except for 50°C, at which temperature the consumption rate was not significantly different from
zero (F = 0.34; P = 0.575). For the 0- to 3-cm depth interval, rates of isoprene consumption were not
significantly different at 25 and 30°C (t16 = 1.00; P = 0.34) but were significantly higher than
rates at all other temperatures at
= 0.05.
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Contrary to the results obtained with soil from the 0- to 3-cm horizon, temperature variability had no significant effect on the consumption of isoprene in the 15- to 18-cm layer (Fig. 3B). Rates of isoprene consumption were not statistically different at any temperature except for 50°C, at which temperature the slope of the line was not statistically different from zero (F = 0.55; P = 0.51). Isoprene consumption rates for the 15- to 18-cm samples were significantly lower at all temperatures than the lowest rate observed for the 0- to 3-cm samples (i.e., at 4°C).
Consumption rates at each temperature were plotted to depict the
optimum temperature and to estimate the Q10 for isoprene consumption (Fig. 4). Our empirical data
showed an optimum temperature of 30°C for isoprene consumption.
Within a temperature range of 5 to 25°C, isoprene consumption rates
increased exponentially (r2 = 0.98) and gave an
average Q10 of 1.42 (Q10 = [KT + 10]/KT, where
KT + 10 and KT denote
rate constants at temperatures T + 10 and T,
respectively). The Arrhenius relationship was also applied to the data
between 5 and 25°C, and the activation energy (Ea) of the
reaction was calculated at 20.0 kJ mol
1. At temperatures
of >30°C, consumption rates declined, and they became negligible at
50°C, as depicted in Fig. 4.
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Time courses for isoprene consumption at different SMs are presented in Fig. 5. Isoprene consumption was highest at SM contents of 25 and 40% (40% was the SM of the freshly collected soil). All treatments below 100% SM showed linear decreases in headspace isoprene concentration over 12 h, indicating that isoprene consumption was moisture dependent. At 100% SM, the slope of the line was not significantly different from zero (F = 0.01; P = 0.92). Multiple comparisons revealed that consumption at 10 and 75% SM were not significantly different (t16 = 1.58; P = 0.14), and rates at 25 and 40% SM were not significantly different (t16 = 0.08; P > 0.5). The rate was lowest at 5% SM (Fig. 5).
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Isoprene consumption was diminished by ~80% in jars purged of
headspace oxygen. Rates of consumption in jars with anoxic headspaces were 120.00 ± 7.44 pmol gdw
1 day
1
versus a rate of 528.36 ± 7.68 pmol gdw
1
day
1 in jars incubated with air containing ambient
atmospheric oxygen. Under ambient O2 conditions,
consumption of isoprene was linear (r2 = 0.96), but under anoxic headspace conditions, an exponential curve fit
the data best (r2 = 0.94).
We were able to isolate and enumerate isoprene-degrading
microorganisms from fresh soil samples from McGowan
Woodlot: large (diameter, 1 to 2 mm) colonies formed 2 to 3 weeks
after incubations began. Two distinct colony types were observed on the
test plates with isoprene as the sole carbon substrate, and these types
were absent from control plates not exposed to isoprene vapor. The abundance of isoprene-degrading microorganisms in surface soil at the
temperature forest site was calculated as 5.8 × 105 ± 3.2 × 105 cells gdw
1 (based on
colony counts from four replicate plates at a dilution of
10
2).
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DISCUSSION |
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Experiments with static chambers in the field suggest that soil can consume atmospheric isoprene at high rates. On all dates sampled, isoprene was rapidly and irreversibly removed from the chamber headspaces to lower than ambient concentrations (i.e., <10 ppb) within 1 h. Standards prepared and sampled in the field showed no detectable change in isoprene consumption over the course of each experiment, indicating that isoprene loss was not due to chemical oxidation with OH in the chambers. An inert tracer (CH3F) was also added to the chambers to determine the diffusive loss rate into the soil. Uptake rates for isoprene were all more than 10 times faster than the diffusive loss rates of the tracer, providing direct evidence that the soil at McGowan Woodlot actively consumes isoprene from the chamber headspaces and that diffusion alone is not responsible for the decrease.
Results of experiments with the intact soil cores from McGowan Woodlot also suggest that isoprene uptake is microbially mediated. Initially, with low concentrations of isoprene, consumption rates were relatively low. However, as isoprene concentrations were increased in successive experiments, rates of isoprene consumption also increased. This gradual increase in the consumption rates in the two cores in the sequence of experiments may reflect growth of microorganisms which followed exposure to isoprene, and the acceleration of consumption rates after repeated exposure to isoprene suggests that isoprene consumption is a growth-linked physiological process. This is consistent with the phenomenon of enrichment observed in the microbial degradation of herbicides (1). Enrichment is an increase in the number and/or the activity of the microorganisms metabolizing a particular compound following the addition of that compound to the soil (1). Isoprene additions in the first experiment and each successive experiment may have enriched the microbial community consuming isoprene, and the excess substrate may have allowed the isoprene-degrading population to grow in number. This growth would result in higher consumption rates in each successive experiment and would suggest that the decline in isoprene in the intact cores was due to microbial consumption (3).
Isoprene consumption was stopped by autoclaving the soil, further indicating that the uptake of isoprene by soil is a biological process. This also demonstrates that physical sorption to soil particles, container surfaces, or sampling components are negligible processes (33) and that the uptake of isoprene is not the result of a chemical transformation in the soil. Results of incubations with room air and isoprene in the headspace revealed no loss of isoprene, suggesting that chemical reactions with oxidative species in the atmosphere of the jars was not responsible for isoprene removal. In spite of the fact that isoprene has a reported atmospheric lifetime of 1.9 h in the troposphere in full sunlight (15), our experimental setup minimized isoprene loss due to reaction with oxidizing radicals over the course of the experiment.
Results of experiments with soil from different depth intervals
revealed that isoprene consumption is most rapid at the surface (0- to
3-cm) layer and declines through the soil profile. At a depth of 12 cm,
the isoprene consumption rate is 35% lower than the rate at 0 to 3 cm.
There are several possible reasons for these patterns as a function of
depth. For example, consumption showed positive correlations with soil
organic matter (r = 0.913) and SM at each depth
(r = 0.95) and a negative correlation with soil pH
(r =
0.83), all of which varied through the soil
profile. Next, since isoprene is produced in chloroplasts and emitted
through the stomata of plants during photosynthesis, the primary source of isoprene in forests is the plant canopy (32). Thus, the
highest concentrations of isoprene would be most accessible to
microorganisms living at the soil surface. Finally, soil samples often
reveal that microorganisms are most abundant at the surface and that numbers decline with depth (30). However, the consumption of isoprene at lower depths suggests that isoprene may diffuse into the
soil beyond the surface layer and be consumed by microorganisms living
well below the soil surface. Notably, the soil at McGowan Woodlot is
well aerated (57% total pore space), and bulk soil analysis revealed
the presence of earthworms throughout the soil profile; thus, it is
likely that isoprene may diffuse well into the soil profile
(30).
Isoprene consumption was linear at incubation temperatures of 5 to 50°C, indicating that isoprene consumption in soil is temperature dependent. Between 5 and 25°C, the average Q10 of 1.42 was similar to Q10 values obtained in studies of other microbial processes, such as soil respiration and CH4 consumption by soil (24, 28, 37), and similar to the Q10 values reported for many common microbial enzymes (2). The optimum temperature for isoprene consumption (30°C) was similar to those reported for many common genera of soil bacteria such as Arthrobacter, Pseudomonas, Streptomyces, and Bacillus (20). It is extremely unlikely that a nonbiological process would exhibit a maximum rate between 5 and 30°C (26). This indicates that the agents responsible for isoprene decline are microbial.
The lack of a temperature effect on isoprene consumption in subsoil (15 to 18 cm) is noteworthy because (i) many biological soil processes are strongly influenced by soil temperature (24, 30, 33, 37) and (ii) consumption of isoprene in the 0- to 3-cm soil horizon was highly temperature dependent. The reason for this result is not immediately clear, and any attempt at providing one would be speculative. However, there are examples of other biological processes that are relatively insensitive to temperature. For instance, methane oxidation in soil has been shown to be much less temperature sensitive than many other biological processes, owing to the depth distribution of methane consumption and the transport mechanism (12, 23). Nonetheless, the reason for the discrepancy between the effects of temperature on isoprene consumption in the 0- to 3-cm soil profile and the 15- to 18-cm soil profile that we observed is uncertain.
Laboratory incubations suggest a close link between SM and isoprene consumption in soil. Adjusting soil water content to between 25 and 60% did not significantly affect the rate of isoprene consumption. However, increasing SM to 75% decreased consumption to 64% of the maximum rate, and increasing SM to 100% resulted in no consumption of isoprene in laboratory incubations. It is possible that diffusion of isoprene into soil is diminished when the soil is saturated, thus limiting isoprene consumption. In studies involving CH4 consumption in soil, Whalen et al. found that a change from the gas phase to aqueous molecular diffusion resulted in a 104-fold less rapid rate of methane transport to cells (37). On the other hand, soil drought diminishes microbial activity by leading to cell desiccation of the soil microbial community and hence a decrease in microbial activity (30).
Incubations of soil under low oxygen concentrations suggest that the consumption of isoprene by soil is an aerobic process. Isoprene consumption rates decreased by 80% under low O2 conditions, and the rate of isoprene consumption declined over the course of the experiment. This decline, coinciding with a decrease in oxygen, is evidence that the organisms degrading isoprene are aerobic. The diminished rate of consumption observed under low O2 conditions implies that some microsites in the soil aggregates may have retained enough oxygen to allow aerobic metabolism to occur or that perhaps other anaerobic reactions may have contributed to the biological degradation of isoprene under low O2 concentrations (29). Harder and Probian found that microorganisms were able to oxidize many organic hydrocarbons anaerobically, including the acyclic monoterpenes and the mono- and bicyclic monoterpenes (19). Isoprene consumption under both high O2 and low O2 conditions may suggest that at least two different organisms may be capable of isoprene consumption in soil, although a more rigorous test of anaerobic metabolism would be required to verify this. However, since the rate of isoprene consumption began to decline over the course of the experiment, this suggests that microsites contained available O2 at the beginning of the experiment, but as this microsite oxygen became scarce, microorganisms could no longer consume isoprene.
Isoprene-degrading microorganisms were abundant in soil sampled from McGowan Woodlot, and preliminary evidence suggests they belong to the genus Arthrobacter, a heterogeneous group of soil bacteria with considerable nutritional versatility (8a). Few previous studies of the distribution and abundance of isoprene-biodegrading microorganisms have been undertaken (35). However, it has been shown in studies of other atmospheric trace gases that degradation by microbial cultures in vitro corroborates in situ field studies of processes which are globally significant (10, 29). The facts that (i) isoprene is a naturally abundant, highly reduced organic compound, (ii) microorganisms have been isolated from soil samples which can utilize the compound as their sole carbon and energy source, and (iii) isoprene consumption occurs in soil from a number of different ecosystems worldwide (8) all suggest that consumption of atmospheric isoprene by soil microorganisms may be a significant component of the global isoprene budget.
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ACKNOWLEDGMENTS |
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This research was supported in part by an Andrew W. Mellon Student Research Grant from Cornell University and by a Kieckhefer Fellowship from Cornell University.
This work also benefited from the insight provided by Michael Keller and Dan Miller, from Eugene Madsen and Tim Fahey, and from two anonymous reviewers who provided valuable comments.
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FOOTNOTES |
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* Corresponding author. Present address: Department of Environmental, Population, and Organismic Biology, Campus Box 334, University of Colorado, Boulder, CO 80309. Phone: (303) 492-2595. Fax: (303) 492-6388. E-mail: cory.cleveland{at}colorado.edu.
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