Previous Article | Next Article ![]()
Applied and Environmental Microbiology, November 1998, p. 4283-4290, Vol. 64, No. 11
Institut für Biotechnologie 1, Forschungszentrum Jülich GmbH, D-52425 Jülich, Germany
Received 12 June 1998/Accepted 14 August 1998
Riboflavin production in the filamentous fungus Ashbya
gossypii is limited by glycine, an early precursor required for
purine synthesis. We report an improvement of riboflavin production in this fungus by overexpression of the glycine biosynthetic enzyme threonine aldolase. The GLY1 gene encoding the threonine
aldolase of A. gossypii was isolated by heterologous
complementation of the glycine-auxotrophic Saccharomyces
cerevisiae strain YM13 with a genomic library from A. gossypii. The deduced amino acid sequence of GLY1
showed 88% similarity to threonine aldolase from S. cerevisiae. In the presence of the GLY1 gene, 25 mU
of threonine aldolase specific activity mg The filamentous hemiascomycete
Ashbya gossypii (Ashby and Novell) (10) is a
biotechnologically important producer of vitamin B2
(riboflavin). Improved producer strains are used for commercial production of riboflavin (7) and give a yield of up to
15 g liter Starting from GTP and ribulose-5-phosphate only six enzymatic reactions
are specific for the biosynthetic pathway of riboflavin (3).
However, metabolic flux to riboflavin is also determined by numerous
nonspecific reactions providing sufficient amounts of the two starting
metabolites. This is indicated by the observation that riboflavin
production can be enhanced by supplementation of the culture medium
with different riboflavin precursors, e.g., ribitol (24),
purines (18), and glycine (7, 12, 18). The
yield-enhancing effect of glycine, which is an important precursor during de novo purine biosynthesis, has also been described for riboflavin production by Candida flareri (13).
Quantitative incorporation of glycine into the riboflavin molecule was
already reported by Plaut in 1954 (29). It is mediated by
glycine amide ribonucleotide synthetase, which catalyzes the formation
of an amido linkage between glycine and 5-phosphoribosylamine,
consuming one molecule of ATP. Against this background, the present
study aimed at the improvement of fungal glycine biosynthesis, leading to a better precursor supply of purine and subsequent riboflavin formation.
Three main routes of glycine biosynthesis have been described so far.
Among plants, animals, and microorganisms the most widespread glycine
biosynthetic enzyme is serine hydroxymethyltransferase (SHMT; EC
2.1.2.1), which catalyzes the tetrahydrofolate-dependent cleavage of
serine into glycine and 5,10-methylene-tetrahydrofolate. This reaction
is the only one producing glycine in Escherichia coli
(40). Accordingly, inactivation of the glyA gene,
encoding SHMT, leads to glycine auxotrophy in E. coli. In
Saccharomyces cerevisiae, this pathway of glycine
biosynthesis is termed the glycolytic pathway, as it starts from the
glycolytic intermediate 3-phosphoglycerate. It is contrasted with the
gluconeogenic pathway, which starts from glyoxylate, a product of the
anaplerotic glyoxylate cycle. Synthesis of alanine glyoxylate
aminotransferase (EC 2.6.1.44), the key enzyme of the latter pathway,
is subject to glucose repression, so that the gluconeogenic pathway is
the major source of glycine only during growth of S. cerevisiae on nonfermentable carbon sources such as ethanol and
acetate (43). Recently, this model of glycine biosynthesis
in yeast has been expanded by a threonine aldolase (EC 4.1.2.5), which
provides a significant amount of glycine during growth of S. cerevisiae on glucose (22, 25). Growth studies even
suggested that threonine aldolase is the major source of glycine under
these conditions, since disruption of the corresponding gene
(GLY1) led to a strongly reduced growth rate in the absence of glycine. However, disruption of both SHM genes, encoding
the two SHMT isoenzymes in yeast, did not significantly affect the growth rate (23).
The present work aimed at improving riboflavin production in A. gossypii by enhancing the biosynthesis of the riboflavin precursor glycine. Cloning, disruption, and overexpression of the A. gossypii GLY1 gene, encoding a threonine aldolase, are reported.
Evidence is presented that overexpression of this glycine biosynthetic gene can lead to an increase in riboflavin production.
Chemicals.
Lysing enzymes from Trichoderma
harzianum were purchased from Sigma-Aldrich Chemie GmbH,
Deisenhofen, Germany. [3-14C]serine was supplied by
Amersham Buchler GmbH and Co. KG, Germany.
Strains and growth conditions.
A. gossypii ATCC 10895 was used as an A. gossypii wild-type strain. S. cerevisiae YM13 (ATCC 201877; MAT
0099-2240/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Threonine Aldolase Overexpression plus Threonine
Supplementation Enhanced Riboflavin Production in
Ashbya gossypii
![]()
ABSTRACT
Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References
1 was
detectable in crude extracts of S. cerevisiae YM13.
Disruption of GLY1 led to a complete loss of threonine
aldolase activity in A. gossypii crude extracts, but growth
of and riboflavin production by the knockout mutant were not affected.
This indicated a minor role of the enzyme in glycine biosynthesis of
A. gossypii. However, overexpression of GLY1
under the control of the constitutive TEF promoter and
terminator led to a 10-fold increase of threonine aldolase specific
activity in crude extracts along with a 9-fold increase of riboflavin
production when the medium was supplemented with threonine. This strong
enhancement, which could not be achieved by supplementation with
glycine alone, was attributed to an almost quantitative uptake of
threonine and its intracellular conversion into glycine. This became
evident by a subsequent partial efflux of the glycine formed.
![]()
INTRODUCTION
Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References
1 (4). Since the first
quantitative report (45), there have been numerous efforts
to improve riboflavin production by A. gossypii by
optimization of medium composition and fermentation conditions (20, 27) as well as by screening of antimetabolite-resistant mutants (38, 39). Since recombinant DNA techniques for
A. gossypii have been established recently (42,
46), the way is now open for development of a targeted producer
strain by molecular approaches.
![]()
MATERIALS AND METHODS
Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References
ura3-1 trp1-1 ade2-1 his3-11,15 leu2-3,112 can1-100 shm1::HIS3
shm2::LEU2 gly1::URA3) (23) and its uracil auxotrophic derivative YM13F (see below) were used for complementation experiments with the A. gossypii genomic library. E. coli DH5
[supE44
lacU169 (
80 lacZ
M15) hsdR17 recA1 endA1
gyrA96 thi-1 relA1] (11) was the recipient for plasmid amplification.
5-FOA selection. As described by Boeke et al. (5) 108 cells of S. cerevisiae YM13 precultivated on YPD medium were plated on 5-fluoroorotic acid (5-FOA) medium (5) containing 10 mM glycine. After 3 days of incubation at 30°C, about 350 spontaneous 5-FOA-resistant mutants were isolated. One of them was designated YM13F and subsequently used for screening the genomic library.
General recombinant DNA techniques. Transformation of E. coli, plasmid preparation, restriction mapping, DNA ligations, Southern blotting, and other DNA manipulations were done by standard techniques (33). Plasmids were reisolated from S. cerevisiae by the method of Nasmyth and Reed (26). Transformation of S. cerevisiae was done by the method of Dohmen et al. (8).
PCR amplification. PCR amplification was performed with Taq DNA polymerase or an enzyme mix containing Taq DNA polymerase and Pwo DNA polymerase (both obtained from Boehringer Mannheim GmbH, Mannheim, Germany) for fragments larger than 5 kb. Reactions were carried out as specified by the manufacturer. Each cycle included 1 min of denaturation (94°C), 1 min of annealing (65°C), and 2 min per 3 kb of fragment size of chain elongation (Taq polymerase, 72°C; Taq-Pwo polymerase, 68°C). After completion of the last cycle, the PCR products were purified by agarose gel electrophoresis and used for cloning.
Isolation of genomic DNA from A. gossypii.
High-molecular-weight genomic DNA was prepared from shake flask
cultures grown for 16 h on liquid complex medium. About 4 to
10 g of the mycelium was harvested by filtration, washed twice with distilled water, suspended in 30 ml of SCE buffer (1 M sorbitol, 0.1 M sodium citrate, 60 mM EDTA) containing 30 µl of
-mercaptoethanol and 50 mg of lysing enzymes, and incubated at
37°C for 1 h. Subsequent addition of 3 ml each of 0.5 mM EDTA
(pH 8.0) and 10% (wt/vol) sodium dodecyl sulfate (SDS) led to lysis of
the protoplasts after about 5 min of incubation at room temperature.
After proteinase K treatment (1 h at 50°C), 1 volume of 5 M ammonium
acetate was added and the mixture was centrifuged (15 min at 10,000 rpm
[Beckman JA-14 rotor]). The genomic DNA was precipitated from the
supernatant with ethanol, treated with RNase A, extracted repeatedly
with phenol-chloroform (1:1, vol/vol), and reprecipitated with ethanol before being resuspended in TE buffer.
Construction of the genomic library.
The A. gossypii
GLY1 gene was isolated from a genomic library constructed in the
S. cerevisiae-E. coli shuttle vector YEp352 (15).
Chromosomal DNA isolated from A. gossypii ATCC 10895 was partly digested with Sau3A. Fragments of >8 kb were
separated by sucrose density gradient centrifugation (33)
and ligated into BamHI-restricted YEp352. The resulting
plasmids were introduced into E. coli DH5
to construct
the genomic library.
Transformation of A. gossypii.
Transformation of
A. gossypii was done by an electroporation method developed
by Revuelta (32a). Fungal mycelium was grown overnight in
liquid complex medium, harvested by filtration, washed with 50 mM
phosphate buffer containing 25 mM dithiothreitol (DTT), incubated in
the same solution for 30 min at 30°C, and collected by filtration.
The cells were subsequently washed with 10 mM Tris-HCl (pH 7.5)
containing 270 mM sucrose and 1 mM MgCl2 and resuspended in
1 ml of the same solution. Aliquots of the suspension, together with
the transforming DNA, were dispensed into 2-mm electrocuvettes and
pulsed with a Gene Pulser (Bio-Rad, Munich, Germany) set at 1.5 kV/cm,
100
, and 25 µF. After electroporation, the mycelium was plated on
complex medium and incubated at 30°C for 6 h to allow
regeneration of the cells. To apply selection pressure, 5 ml of top
agar (complex medium plus 1.8 mg of Geneticin per ml) was subsequently added.
Sequence determination and alignment. The GLY1 nucleotide sequence was determined on both strands by the dideoxynucleotide termination method of Sanger et al. (34). Homology searches were performed by using the sequence similarity search program BLAST (28). The CLUSTAL method (14) was used for multiple alignment of sequences.
Gene disruption.
GLY1 knockout mutants were
constructed by replacing the 5'-terminal 500 bp of the gene by a
Geneticin resistance cassette. The 3.7-kb HindIII
fragment from the subclone YEp352 GB 26-9-6, which carried the
GLY1 gene (except the 3'-terminal 48 bp) and 2.7 kb upstream
from the gene, was inserted into pUC18 (44) at the
HindIII site. The resulting plasmid,
pUC18GLY1, was used as a template in a PCR with the
primers GLY1UP
(5'-CCTGGGCTCGAGACTTGTAGTCAACTGTAGCAG-3') and GLY1DOWN
(5'-CTTGTTCTCGAGAAGGCTTGGTGTATGGAGAAC-3'),
resulting in amplification of the whole plasmid except the
5'-terminal 500 bp of the GLY1 gene. At the underlined
position of each primer, an XhoI site was introduced so that
the PCR product could be religated after XhoI cleavage
(pUC18GLY1
500). A 1.8-kb SalI fragment of plasmid pAG231 (42), which carried the E. coli
kanamycin resistance gene under the control of the A. gossypii
TEF promoter and terminator (TEF is translation
elongation factor 1
), was subsequently introduced into the
XhoI site of pUC18GLY1
500. The kanamycin
resistance gene can be used as a dominant marker conferring resistance
to Geneticin in eukaryotes (16). The resulting plasmid
pUC18
gly1::kanr (see
Fig. 3a) was digested with XbaI and used to transform
A. gossypii to Geneticin resistance. Since pUC18 does not
contain an autonomous replicating sequence for A. gossypii
and homologous recombination is described as the main mechanism for DNA
integration in A. gossypii (12), disruption of
GLY1 was expected in all Geneticin-resistant transformants.
Construction of the GLY1 overexpression plasmid
pAG203GLY1.
PCR amplification of the GLY1 gene
was carried out to permit cloning into the expression plasmid pAG203
(19). It uses the TEF promoter for a strong and
constitutive expression. The primers GLY1-START
(5'-AAACCCAGCATGCAACAGGATATGGAACTACCAGAG-3') and
GLY1-STOP (5'-CATCGAGTTAACTTAATACTTGTAGGTCTTGAT-3')
were designed on the basis of the nucleotide sequence of the
GLY1 gene. To facilitate cloning, additional restriction
sites (SphI and HpaI, respectively; exchanged
nucleotides are underlined) were introduced into each primer.
Introduction of the SphI site into primer GLY1-START was necessary to enable the cloning in frame to the ATG initiation codon
available on the plasmid pAG203 and led to a modification of the second
codon from AAT to CAA. This corresponds to the conserved amino acid
exchange Asn
Gln. The amplified PCR product was digested with
SphI and HpaI, purified by agarose gel
electrophoresis, and inserted into
SphI-ScaI-linearized pAG203. The resulting
plasmid was designated pAG203GLY1.
Determination of total riboflavin and mycelial dry weight. For the determination of total riboflavin, cells were disrupted by the addition of 100 µl of lysing enzymes to 1 ml of sample taken from liquid cultures. After incubation at 30°C for 1 h, 900 µl of distilled water was added. The resulting homogenate was centrifuged (5 min at 13,000 rpm [Eppendorf F45-18-11 standard rotor]), filtered (pore size, 0.45 µm; Millipore, Eschborn, Germany) and analyzed for riboflavin by high-pressure liquid chromatography as described by Schmidt et al. (39).
For the determination of mycelial dry weight, samples were taken from liquid cultures and filtered through paper filters (diameter, 5 cm). The collected mycelium was dried overnight at 110°C and weighed.Cell extraction. A. gossypii mycelium was harvested by filtration, rinsed with distilled water, and resuspended in 50 mM HEPES-NaOH buffer (pH 7.0)-1 mM DTT-20 µM pyridoxal phosphate at a ratio of 2 to 5 ml/g (wet weight) of mycelium. The cells were disrupted in a French press (Aminco, Silver Spring, Md.) at 20,000 lb/in2, and the resulting homogenate was centrifuged at 20,000 × g for 20 min. The supernatant was desalted on a Sephadex G-25 column (NAP-10; Pharmacia Biotech, Uppsala, Sweden) for use in enzyme assays and is subsequently referred to as the crude extract. All procedures were carried out at 4°C.
S. cerevisiae cell extracts were prepared as described previously (25).Enzyme assays. Threonine aldolase activity was determined by quantification of the glycine formed in a high-pressure liquid chromatography system as previously described (25). In a final volume of 250 µl, a typical assay mixture contained 80 mM threonine, 100 mM HEPES-NaOH (pH 7.0), 30 µM pyridoxal phosphate, and 75 µl of crude extract. SHMT activity was measured by a modification of the method of Geller and Kotb (9). [3-14C]serine incorporation into tetrahydrofolate-bound products was measured. A typical assay mixture contained 50 mM Tris-HCl (pH 8.0), 0.2 mM serine, 0.024 mM [3-14C]serine, 2 mM tetrahydrofolate, 0.25 mM pyridoxal phosphate, 2.5 mM EDTA (pH 8.0), 3 mM DTT, and 0.25 mg of protein (from crude extracts). The labeled 5,10-methylene tetrahydrofolate was separated from unreacted serine by streaking 20-µl aliquots of the assay mixture onto DEAE-cellulose filter circles (diameter, 2.3 cm; Whatman DE 81) and washing the filters in distilled water to remove unreacted labeled serine.
Protein concentrations were determined spectrophotometrically by the method of Bradford (6) at 595 nm with the Serva Blue G dye binding reagent. Bovine serum albumin was used as a standard.Nucleotide sequence accession number. Sequence data have been submitted to the EMBL database and are listed under accession no. AJ005442.
| |
RESULTS |
|---|
|
|
|---|
Cloning and sequencing of the A. gossypii GLY1
gene.
To isolate the GLY1 gene from A. gossypii, heterologous complementation of the glycine auxotrophic
yeast strain YM13 (shm1::HIS3 shm2::LEU2 gly1::URA3)
with a plasmid library of genomic A. gossypii DNA in
YEp352 (Ampr URA3) was performed. However, no
transformants could be isolated by direct selection for glycine
prototrophy. Therefore, uracil auxotrophic mutants of the yeast strain
YM13 were isolated by selection for 5-FOA resistance (for
details, see Materials and Methods) to allow preselection of
plasmid-containing clones. One of the spontaneous 5-FOA-resistant
mutants (YM13F) was subsequently used for a second transformation with
the genomic library. Preselection for uracil prototrophy led to
the isolation of 70,000 transformants, which were replica plated on
minimal medium without glycine. From this medium, 25 glycine-prototrophic clones were isolated. Curing from the plasmid by
two subsequent cultivations on complex medium as well as
retransformation with the isolated plasmids showed that complementation
was linked to uracil prototrophy, which indicated that it was due to a
cloned fragment. Restriction analysis of the isolated plasmids showed
that they carried inserts of 10 to 12 kb, all of them containing the
same gene. Subcloning proceeding from the genomic clone YEp352 GB
26-9 revealed complementation of a 3.7-kb HindIII
fragment (YEp352 GB 26-9-6), which was subsequently sequenced. It
carried two incomplete open reading frames (ORFs), 1,326 bp of ORF1 and
1,098 bp of ORF2 (Fig. 1). The deduced
amino acid sequence of ORF2 showed 88% similarity to threonine
aldolase (GLY1) from S. cerevisiae. The
predicted amino acid sequence of ORF1 displayed 54% similarity to
YEL043w, a hypothetical 106.1-kDa protein of unknown function
encoded in the GLY1-GDA1 intergenic region of S. cerevisiae. The striking similarity of ORF2 to the S. cerevisiae GLY1 gene, together with the detection of
25 mU of threonine aldolase specific activity mg of
protein
1 in the yeast transformants, in contrast to <0.1
mU mg of protein
1 in the control (25), led to
the conclusion that a GLY1 homologue had been isolated from
A. gossypii. The full sequence of the A. gossypii
GLY1 gene was subsequently determined by partial sequencing of the
genomic clone YEp352 GB 7-1 (Fig. 1). The A. gossypii
GLY1 gene has an ORF of 1,146 bp encoding a predicted
protein of 382 amino acids.
|
Alignment of A. gossypii threonine aldolase with other proteins. A multiple amino acid sequence alignment that includes threonine aldolase from A. gossypii and other proteins whose sequences have previously been reported is shown in Fig. 2. Apart from yeast threonine aldolase, with 88% similarity, the putative A. gossypii protein showed the highest similarity to two other fungal proteins, namely, threonine aldolase from Candida albicans (76%) and a hypothetical protein from Schizosaccharomyces pombe (62%). We also detected high similarity to a protein from the bacterium Aeromonas jandiae (62%), which was recently identified as an L-allo-threonine aldolase (21), as well as to a hypothetical protein from the nematode Caenorhabditis elegans (54%). Apart from the C. elegans protein, all six proteins are of similar length. Whereas the C and N termini of the proteins are only weakly conserved, the central part contains two highly conserved domains. One of them contains Lys199 of the L-allo-threonine aldolase of Aeromonas jandiae, which was recently identified as the pyridoxal 5'-phosphate binding lysine residue essential for the aldol cleavage reaction by site-directed mutagenesis (21). This residue is conserved among all six proteins. Threonine aldolase from Aeromonas jandiae is by far the smallest of the six proteins, lacking the weakly conserved C- and N-terminal regions. This indicates that these residues might not be important for the enzymatic activity of the protein and explains why the formation of a truncated protein from plasmids YEp352 GB 26-9 and YEp352 GB 26-9-6 led to complementation of glycine auxotrophy in S. cerevisiae YM13.
|
Characterization of GLY1 knockout mutants. The chromosomal GLY1 gene was inactivated by gene disruption. A linearized DNA fragment containing the Geneticin resistance cassette flanked by the 3' end of the GLY1 gene on one side and by the upstream region of GLY1 on the other side was used to transform A. gossypii ATCC 10895 to Geneticin resistance (Fig. 3a). Gene disruption was confirmed by PCR (Fig. 3b). As expected, a 1.3-kb shift of the signal was observed. Beyond that, Southern hybridization (Fig. 3c) demonstrated that replacement with the resistance marker had occurred at the GLY1 locus.
|
1). This indicated that GLY1 is the
only gene encoding a threonine aldolase in A. gossypii. However, SHMT specific activity still reached the
wild-type level (2.5 to 3 mU mg of protein
1), which
demonstrated that this reaction is catalyzed by a different enzyme in
A. gossypii. Disruption of GLY1 did not lead to a
requirement for glycine. Growth and riboflavin production on minimal
medium without supplementary glycine turned out to be unchanged in the GLY1 disruption mutants.
Overexpression of GLY1.
Although disruption of
GLY1 had demonstrated that threonine aldolase is probably
not essential for glycine biosynthesis in the A. gossypii
wild-type strain, overexpression of the gene seemed to be
promising with regard to an improvement of glycine biosynthesis. Overexpression of the GLY1 gene was achieved by
introducing the expression plasmid pAG203GLY1 (see
Materials and Methods) into A. gossypii ATCC
10895. Transformants showed a ca. 10-fold increase in
threonine aldolase specific activity over the whole time course of cultivation (Fig. 4a). The growth
remained unchanged (Fig. 4b). However, it was not possible to
obtain a constant level of threonine aldolase specific activity
throughout cultivation. As in the control strain, which was transformed
only with the control plasmid pAG203, enzyme activity decreased
drastically from 12 to 34 h of cultivation. To ensure that this
decrease was not due to a decrease of promoter activity,
-galactosidase was expressed under the control of the TEF
promoter by using the plasmid pAG110 (41). In this case,
70% of the starting activity was still detectable at the end of the
cultivation time (data not shown).
|
|
| |
DISCUSSION |
|---|
|
|
|---|
Threonine aldolase is thought to be the major source of glycine in the yeast S. cerevisiae (23, 25). Therefore, it was a promising candidate for the improvement of glycine biosynthesis and subsequent riboflavin production in the closely related filamentous fungus A. gossypii.
The ORF isolated by heterologous complementation of the glycine-auxotrophic S. cerevisiae strain YM13 was identified as encoding threonine aldolase of A. gossypii by detection of the enzymatic activity of the corresponding protein in crude extracts as well as by an amino acid alignment with threonine aldolases from S. cerevisiae, C. albicans, and Aeromonas jandiae. The remarkably high homology (88%) between the deduced amino acid sequences of the two threonine aldolases from A. gossypii and S. cerevisiae underlines the close relationship between the two fungi, which was concluded from an alignment of ITS1 and ITS2 sequences by Prillinger et al. (31) and led to a new definition of the family Saccharomycetaceae that included both unicellular saprophytic yeasts and dimorphic or filamentous parasitic fungi. Furthermore, colocation of the GLY1 gene and a YEL043w homologue in A. gossypii is another good example of conservation of gene order in A. gossypii and S. cerevisiae. Only recently was the A. gossypii THR4 gene located in a four-gene cluster that is conserved between A. gossypii and S. cerevisiae (1).
Surprisingly, heterologous complementation of S. cerevisiae YM13 did not lead to the isolation of a gene encoding SHMT. This is probably due to the particular importance of threonine aldolase for glycine biosynthesis in yeast. We had already reported in a previous paper (25) that growth of S. cerevisiae YM13 can be completely restored by transformation with a plasmid containing the GLY1 gene. On the other hand, McNeil et al. (23) demonstrated that both gly1 shm1 and gly1 shm2 double mutants are severely impaired in growth. Taking into consideration that heterologous expression of an SHM gene from A. gossypii in yeast is probably even weaker than that of the homologous gene, it becomes conceivable that this might not be sufficient to permit growth of the glycine-auxotrophic yeast strain.
Disruption of GLY1 in A. gossypii led to a complete loss of detectable threonine aldolase activity, whereas SHMT still reached the wild-type level. This indicated that the aldol cleavage reaction of serine into glycine and 5,10-methylene tetrahydrofolate is catalyzed by a separate enzyme in A. gossypii. This is in agreement with the situation in yeast (23) but contrasts with that in E. coli (36) and rat liver (35), where threonine aldolase activity was demonstrated for purified SHMT. In S. cerevisiae, disruption of the GLY1 gene leads to a strongly reduced growth rate in the absence of glycine whereas the disruption of both SHM genes does not (23). These studies suggested that threonine aldolase is the major source of glycine in yeast. In contrast, disruption of GLY1 did not lead to a requirement for glycine in A. gossypii. Additionally, a decrease in riboflavin production, indicating a reduced glycine supply, was not detectable. That means that threonine aldolase plays only a minor role during glycine biosynthesis of A. gossypii or that its function can be fully compensated by other glycine biosynthetic pathways.
A ca. 10-fold increase in threonine aldolase specific activity was
reached by overexpression of GLY1 under the control of the
TEF promoter and terminator. However, there was still a
drastic decrease in activity during the course of cultivation. Although TEF promoters from different sources have been shown to be
comparatively strong (2, 37), activity was demonstrated to
depend on the age of the tissue for the TEF promoter from
Lycopersicon esculentum (30). Such a
promoter-dependent kind of regulation can be excluded in our case,
because
-galactosidase, expressed under the control of the
TEF promoter, did not show a similar time course.
Consequently, the decrease in threonine aldolase specific activity must
be attributed to a promoter-independent type of regulation on the mRNA
or protein level. Apart from these in vitro data, overexpression of
threonine aldolase was also demonstrated in vivo by the almost
quantitative conversion of extracellular threonine into glycine in the
overexpression strain A. gossypii pAG203GLY1.
Overexpression of GLY1, together with threonine supplementation of the culture medium, led to a strong enhancement of riboflavin production, which could not be achieved by glycine supplementation alone. From the almost quantitative conversion of the extracellular threonine into glycine, we conclude that this enhancement must be due to an increased uptake of extracellular threonine and its subsequent intracellular conversion into glycine. Although most of the glycine produced was subsequently excreted into the medium, this obviously improved the intracellular availability of glycine and led to an enhanced riboflavin production. The finding that improvement of riboflavin production requires both overexpression of threonine aldolase and threonine supplementation leads to the conclusion that threonine biosynthesis must be the limiting factor under these conditions. We have evidence that feedback inhibition of aspartokinase, an important regulatory enzyme during threonine biosynthesis in S. cerevisiae (32) and Corynebacterium glutamicum (17), is responsible for this limitation. Elimination of this feedback inhibition could therefore be the key to further improvement of riboflavin production without any amino acid supplementation of the culture medium.
| |
ACKNOWLEDGMENTS |
|---|
This work was supported in part by the "Fonds der chemischen Industrie."
We thank Andrew L. Bognar for kindly providing us with S. cerevisiae YM13. Thanks are also due to H. Seulberger, BASF AG (Ludwigshafen, Germany), for managing the sequencing of the A. gossypii GLY1 gene and to P. Philippsen for supplying plasmids pAG231, pAG203, and pAG110. We are also grateful to J. Heinisch for helpful suggestions about the molecular biology of yeast.
| |
FOOTNOTES |
|---|
* Corresponding author. Mailing address: Institut für Biotechnologie 1, Forschungszentrum Jülich GmbH, D-52425 Jülich, Germany. Phone: 49-2461-612843 or 615446. Fax: 49-2461-612719. E-mail: P.Stahmann{at}kfa-juelich.de.
| |
REFERENCES |
|---|
|
|
|---|
| 1. | Altmann-Jöhl, R., and P. Philippsen. 1996. AgTHR4, a new selection marker for transformation of the filamentous fungus Ashbya gossypii, maps in a four-gene cluster that is conserved between A. gossypii and Saccharomyces cerevisiae. Mol. Gen. Genet. 250:69-80[Medline]. |
| 2. |
Axelos, M.,
C. Bardet,
T. Liboz,
A. L. Van Thai,
C. Curie, and B. Lescure.
1989.
The gene family encoding the Arabidopsis thaliana elongation factor EF-1 : molecular cloning, characterization and expression.
Mol. Gen. Genet.
219:106-112[Medline].
|
| 3. | Bacher, A. 1991. Biosynthesis of flavins, p. 215-249. In F. Müller (ed.), Chemistry and biochemistry of flavoenzymes, vol. 1. CRC Press, Inc., Boca Raton, Fla. |
| 4. | Bigelis, R. 1989. Industrial products of biotechnology: application of gene technology, p. 243. In H. J. Rehm, and G. Reed (ed.), Biotechnology, vol. 7b. VCH, Weinheim, Germany. |
| 5. | Boeke, J. D., J. Trueheart, G. Natsoulis, and G. R. Fink. 1987. 5-Fluoroorotic acid as a selective agent in yeast molecular genetics. Methods Enzymol. 154:164-175[Medline]. |
| 6. | Bradford, M. M. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72:248-254[Medline]. |
| 7. | Demain, A. L. 1972. Riboflavin oversynthesis. Annu. Rev. Microbiol. 26:369-388[Medline]. |
| 8. | Dohmen, R. J., A. W. M. Strasser, C. B. Höner, and C. P. Hollenberg. 1991. An efficient transformation procedure enabling long-term storage of competent cells of various yeast genera. Yeast 7:691-692[Medline]. |
| 9. | Geller, A. M., and M. Y. Kotb. 1989. A binding assay for serine hydroxymethyltransferase. Anal. Biochem. 180:120-125[Medline]. |
| 10. | Guillermond, P. 1928. Recherches sur quelques Ascomycetes inferieurs isoles de la stigmatomycose des graines de cotonnier. Essai sur la phylogenie des Ascomycetes. Rev. Gen. Bot. 40:328-342, 397-414, 474-485, 555-574, 606-624, 690-704. |
| 11. |
Hanahan, D.
1985.
Techniques for transformation of E. coli, p. 109-135.
In
D. M. Glover (ed.), DNA cloning a practical approach. IRL Press, Oxford, United Kingdom.
|
| 12. | Hanson, A. M. 1967. Microbial production of pigments and vitamins, p. 222-250. In H. J. Peppler (ed.), Microbial technology. Reinhold, New York, N.Y. |
| 13. | Heefner, D. L., C. A. Weaver, M. J. Yarus, L. A. Burdzinski, D. C. Gyure, and E. W. Foster. 1988. Riboflavin producing strains of microorganisms, method for selecting, and method for fermentation. Patent cooperation treaty WO 88/09822. |
| 14. |
Higgins, D. G., and P. M. Sharp.
1989.
Fast and sensitive multiple sequence alignments on a microcomputer.
Comput. Appl. Biosci.
5:151-153 |
| 15. | Hill, J. E., A. M. Myers, T. J. Koerner, and A. Tzagoloff. 1986. Yeast/E. coli shuttle vectors with multiple unique restriction sites. Yeast 2:163-167[Medline]. |
| 16. | Jiminez, A., and J. Davies. 1980. Expression of a transposable antibiotic resistance element in Saccharomyces. Nature 287:869-871[Medline]. |
| 17. | Kalinowski, J., J. Cremer, B. Bachmann, L. Eggeling, H. Sahm, and A. Pühler. 1991. Genetic and biochemical analysis of the aspartokinase from Corynebacterium glutamicum. Mol. Microbiol. 5:1197-1204[Medline]. |
| 18. | Kaplan, C., and A. L. Demain. 1970. Nutritional studies on riboflavin overproduction by Ashbya gossypii, p. 137-159. In D. G. Aheaon (ed.), Recent trends in yeast research. Georgia State University, Atlanta. |
| 19. | Kurth, R., P. Philippsen, S. Steiner, and M. Wright. 1992. New promoter region. Patent cooperation treaty WO 92/00379. |
| 20. | Lago, B. D., and L. Kaplan. 1981. Vitamin fermentations: B2 and B12. Adv. Biotechnol. 3:241-246. |
| 21. |
Liu, J.-Q.,
T. Dairi,
M. Kataoka,
S. Shimizu, and H. Yamada.
1997.
L-allo-Threonine aldolase from Aeromonas jandiae DK-39: gene cloning, nucleotide sequencing, and identification of the pyridoxal 5'-phosphate-binding lysine residue by site-directed mutagenesis.
J. Bacteriol.
179:3555-3560 |
| 22. |
Liu, J.-Q.,
S. Nagata,
T. Dairi,
H. Misono,
S. Shimizu, and H. Yamada.
1997.
The GLY1 gene of Saccharomyces cerevisiae encodes a low-specific L-threonine aldolase that catalyzes cleavage of L-allo-threonine and L-threonine to glycine expression of the gene in Escherichia coli and purification and characterization of the enzyme.
Eur. J. Biochem.
245:289-293[Medline].
|
| 23. |
McNeil, J. B.,
E. M. McIntosh,
B. V. Taylor,
F. Zhang,
S. Tang, and A. L. Bognar.
1994.
Cloning and molecular characterization of three genes, including two genes encoding serine hydroxymethyltransferase, whose inactivation is required to render yeast auxotrophic for glycine.
J. Biol. Chem.
269:9155-9165 |
| 24. | Mehta, S. M., A. K. Mattoo, and V. V. Modi. 1972. Ribitol and flavinogenesis in Eremothecium ashbyi. Biochem. J. 130:159-166[Medline]. |
| 25. | Monschau, N., K.-P. Stahmann, H. Sahm, J. B. McNeil, and A. L. Bognar. 1997. Identification of Saccharomyces cerevisiae GLY1 as a threonine aldolase: a key enzyme in glycine biosynthesis. FEMS Microbiol. Lett. 150:55-60[Medline]. |
| 26. |
Nasmyth, K. A., and S. I. Reed.
1980.
Isolation of genes by complementation in yeast: molecular cloning of a cell-cycle gene.
Proc. Natl. Acad. Sci. USA
77:2119-2123 |
| 27. | Özbas, T., and T. Kutsal. 1986. Comparative study of riboflavin production from two microorganisms: Eremothecium ashbyi and Ashbya gossypii. Enzyme Microb. Technol. 8:593-596. |
| 28. |
Pearson, W. R., and D. J. Lipman.
1988.
Improved tools for biological sequence comparison.
Proc. Natl. Acad. Sci. USA
85:2444-2448 |
| 29. |
Plaut, G. W. E.
1954.
Biosynthesis of riboflavin. II. Incorporation of C14-labelled compounds into ring A.
J. Biol. Chem.
211:111-116 |
| 30. |
Pokalsky, A. R.,
W. R. Hiatt,
N. Ridge,
R. Rasmussen,
C. M. Houck, and C. K. Shewmaker.
1989.
Structure and expression of elongation factor 1 in tomato.
Nucleic Acids Res.
17:4661-4673 |
| 31. | Prillinger, H., W. Schweigkofler, M. Breitenbach, M. Briza, F. Staudacher, K. Lopandic, O. Molnar, F. Weigang, M. Ibi, and A. Ellinger. 1997. Phytopathogenic filamentous (Ashbya, Eremothecium) and dimorphic fungi (Holleya, Nematospora) with needle-shaped ascospores as new members within the Saccharomycetaceae. Yeast 13:945-960[Medline]. |
| 32. |
Ramos, C., and I. L. Calderon.
1992.
Overproduction of threonine by Saccharomyces cerevisiae mutants resistant to hydroxynorvaline.
Appl. Environ. Microbiol.
58:1677-1682 |
| 32a. | Revuelta, J. L. Personal communication. |
| 33. | Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y. |
| 34. |
Sanger, F.,
S. Nicklen, and A. R. Coulson.
1977.
DNA sequencing with chain-terminating inhibitors.
Proc. Natl. Acad. Sci. USA
74:5463-5467 |
| 35. |
Schirch, L., and T. Gross.
1968.
Serine transhydroxymethylase: identification as the threonine and allothreonine aldolase.
J. Biol. Chem.
243:5651-5655 |
| 36. |
Schirch, L.,
S. Hopkins,
E. Villar, and S. Angelaccio.
1985.
Serine hydroxymethyltransferase from E. coli: purification and properties.
J. Bacteriol.
163:1-7 |
| 37. |
Schirmaier, F., and P. Philippsen.
1984.
Identification of two genes coding for the translation elongation factor EF-1 of S. cerevisiae.
EMBO J.
3:3311-3315[Medline].
|
| 38. |
Schmidt, G.,
K.-P. Stahmann, and H. Sahm.
1996.
Inhibition of purified isocitrate lyase identified itaconate and oxalate as potential antimetabolites for the riboflavin overproducer Ashbya gossypii.
Microbiology
142:411-417 |
| 39. |
Schmidt, G.,
K.-P. Stahmann,
B. Kaesler, and H. Sahm.
1996.
Correlation of isocitrate lyase activity and riboflavin formation in the riboflavin overproducer Ashbya gossypii.
Microbiology
142:419-426 |
| 40. | Stauffer, G. V. 1996. Biosynthesis of serine, glycine, and one-carbon units, p. 506-513. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed., vol. 1. ASM Press, Washington, D.C. |
| 41. | Steiner, S. 1991. Expressionsstudien im filamentösen Pilz Ashbya gossypii unter Verwendung von Signalsequenzen des TEF-Gens. Ph.D. thesis. Justus Liebig University, Giessen, Germany. |
| 42. | Steiner, S., J. Wendland, M. C. Wright, and P. Philippsen. 1995. Homologous recombination as the main mechanism for DNA integration and cause of rearrangements in the filamentous ascomycete Ashbya gossypii. Genetics 140:973-987[Abstract]. |
| 43. |
Ulane, R., and M. Ogur.
1972.
Genetic and physiological control of serine and glycine biosynthesis in Saccharomyces.
J. Bacteriol.
109:34-43 |
| 44. | Vieira, J., and J. Messing. 1982. The pUC plasmids, an M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers. Gene 19:259-268[Medline]. |
| 45. | Wickerham, L. J., M. H. Flickinger, and R. M. Johnston. 1946. The production of riboflavin by Ashbya gossypii. Arch. Biochem. 9:95-98. |
| 46. | Wright, M. C., and P. Philippsen. 1991. Replicative transformation of the filamentous fungus Ashbya gossypii with plasmids containing Saccharomyces cerevisiae ARS elements. Gene 109:99-105[Medline]. |
This article has been cited by other articles:
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Copyright © 2009 by the American Society for Microbiology. For an alternate route to Journals.ASM.org, visit: http://intl-journals.asm.org | More Info»