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Applied and Environmental Microbiology, November 1998, p. 4452-4459, Vol. 64, No. 11
0099-2240/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Accumulation of
-Keto Acids as Essential
Components in Cyanide Assimilation by Pseudomonas
fluorescens NCIMB 11764
Daniel A.
Kunz,*
Jui-Lin
Chen, and
Guangliang
Pan
Department of Biological Sciences, University
of North Texas, Denton, Texas 76203
Received 25 June 1998/Accepted 1 September 1998
 |
ABSTRACT |
Pyruvate (Pyr) and
-ketoglutarate (
Kg) accumulated when cells
of Pseudomonas fluorescens NCIMB 11764 were cultivated on growth-limiting amounts of ammonia or cyanide and were shown to be
responsible for the nonenzymatic removal of cyanide from culture fluids
as previously reported (J.-L. Chen and D. A. Kunz, FEMS Microbiol.
Lett. 156:61-67, 1997). The accumulation of keto acids in the medium
paralleled the increase in cyanide-removing activity, with maximal
activity (760 µmol of cyanide removed min
1 ml of
culture fluid
1) being recovered after 72 h of
cultivation, at which time the keto acid concentration was 23 mM. The
reaction products that formed between the biologically formed keto
acids and cyanide were unambiguously identified as the corresponding
cyanohydrins by 13C nuclear magnetic resonance
spectroscopy. Both the Pyr and
-Kg cyanohydrins were further
metabolized by cell extracts and served also as nitrogenous growth
substrates. Radiotracer experiments showed that CO2 (and
NH3) were formed as enzymatic conversion products, with the
keto acid being regenerated as a coproduct. Evidence that the enzyme
responsible for cyanohydrin conversion is cyanide oxygenase, which was
shown previously to be required for cyanide utilization, is based on
results showing that (i) conversion occurred only when extracts were
induced for the enzyme, (ii) conversion was oxygen and reduced-pyridine
nucleotide dependent, and (iii) a mutant strain defective in the enzyme
was unable to grow when it was provided with the cyanohydrins as a
growth substrate. Pyr and
Kg were further shown to protect cells
from cyanide poisoning, and excretion of the two was directly linked to
utilization of cyanide as a growth substrate. The results provide the
basis for a new mechanism of cyanide detoxification and assimilation in which keto acids play an essential role.
 |
INTRODUCTION |
Cyanide is a notorious poison. Its
inhibitory effect on respiration has been known since the 1920s, when
Warburg and Keilin first demonstrated that it combines with trivalent
iron in cytochrome oxidase (38, 40, 44). Although highly
toxic, it is a normal part of our environment for which mechanisms of
biological formation (cyanogenesis) and detoxification exist (8,
22, 42). Cyanide also arises from various industrial practices
such as steel coking, electroplating, and mining, but significant
accumulations in the environment probably do not occur because of its
highly reactive nature (13, 18, 41, 46). The interactions
between microorganisms and cyanide, however, remain of interest, since
the mechanisms of tolerance and assimilation are poorly understood. A
number of reports documenting the ability of microorganisms to grow on cyanide have appeared, but the biochemical basis of these abilities has
remained largely obscure. Most studies have reported its ability to
serve as a nitrogen source only, since at the concentrations needed for
it to serve as a carbon source, it is too toxic (15, 24). As
far as is known, growth on cyanide requires that it be enzymatically
converted to ammonia. Once formed it can then be readily incorporated
into cellular macromolecules by established mechanisms (31).
Two separate conversions have been described. They are hydrolytic and
oxidative conversion, and they yield formic acid and carbon dioxide as
reaction by-products, respectively. The enzyme responsible for
hydrolytic conversion has variously been described as cyanidase,
cyanide dihydratase, or cyanide nitrilase (CNN), and it catalyzes the
reaction shown in equation 1.
|
(1)
|
Mechanistically, CNNs resemble other nitrilases (e.g., EC 3.5.5.1)
that catalyze the direct conversion of organic nitriles into an organic
acid and ammonia but for which the substrate range appears to be
limited to cyanide. The involvement of CNNs in cyanide metabolism has
been reported for Alcaligenes xylosooxidans subsp. denitrificans (19, 20), Bacillus
pumilus (30), and Pseudomonas sp.
(45). Oxidative conversion is mediated by an enzyme
described as cyanide oxygenase (CNO). This enzyme has been described
for Pseudomonas fluorescens NCIMB 11764 only (15,
23-26). Recent work in our laboratory has shown that CNO
functions as a monooxygenase, since a single atom of molecular oxygen
was shown to be incorporated during conversion (43). Since
the other atom of oxygen in CO2 was shown to be derived
from water, a reaction mechanism in which cyanide undergoes initial
monooxygenative attack to give an unknown intermediate (X-OH) as shown
in equation 2 was proposed (43).
|
(2)
|
Further hydrolysis of X-OH is then expected to give
CO2 and NH3 as shown in equation 3.
|
(3)
|
The nature of X-OH and whether an additional enzyme is required
for its conversion are unknown. Interestingly, NCIMB 11764 also
elaborates a CNN, but only CNO has been shown to be physiologically required for cyanide utilization (26). This conclusion was
reached after it was found that mutants unable to grow on cyanide did not make CNO but could still elaborate CNN.
CNO is induced when cyanide (KCN) is added to nitrogen-limited cells
(4, 26). This approach for obtaining cells induced for the
enzyme is more convenient than growing cells on cyanide, which requires
several days of fed-batch cultivation. During the course of experiments
aimed at optimizing CNO induction, we discovered that the consumption
of cyanide and the appearance of CNO activity in cell extracts were not
concomitant (3, 4). Further experiments showed that cyanide
consumption independent of that catalyzed by CNO occurred
nonenzymatically and that a reaction between cyanide and a metabolite
excreted into the medium was responsible for cyanide's removal
(4). Since cyanide-removing activity in culture fluids
consistently copurified with iron-chelating activity, it was concluded
that the responsible metabolite was a siderophore, but further
identification of this siderophore was not achieved. Here we report
that the compounds responsible for nonenzymatic cyanide removal are
-keto acids, namely, pyruvate (Pyr) and
-ketoglutarate (
Kg).
These findings help explain the earlier reported involvement of a
putative siderophore, since these compounds can act as iron chelators
(10, 35). However, the additional ability to serve also as
effective cyanide-scavenging agents has not generally been recognized.
Both Pyr and
Kg were excreted into the medium when P. fluorescens NCIMB 11764 was grown on nitrogen-limiting amounts of
ammonia or cyanide as a nitrogen source, and we now demonstrate that
these metabolites play an essential role in the utilization of cyanide
as a growth substrate.
 |
MATERIALS AND METHODS |
Strains, cultivation conditions, and cell extract preparation.
P. fluorescens NCIMB 11764, whose origin has been described
previously (15, 25), was used throughout this study. A
mutant strain, JL102, unable to grow on cyanide was obtained by
nitrosoguanidine mutagenesis as described previously (26).
The minimal medium for cultivation of cells contained 67 mM
KH2PO4 (pH 7.0), 1.6 mM MgSO4
· 7H2O, and 36 µM FeSO4 · 7H2O. The inorganic salts were added aseptically to the
buffer solution after it was autoclaved, as were glucose (20 mM) and
various nitrogen sources. Unless otherwise indicated below, cells were
incubated on a gyratory shaker (250 rpm) at 30°C. The excretion of
keto acids was routinely observed in minimal medium (described above)
supplied with ammonia (NH4CI, 1 mM) as the nitrogen source
(referred to herein as GA medium). The inoculum for growth was derived
from a 24- to 36-h-old colony grown on L agar (Lennox medium)
(28), which was cultivated in GA medium for 48 h
(A540, 0.7) before the entire culture (10% inoculum) was transferred to a second flask containing the same medium.
The presence of keto acids and that of cyanide-removing activity in the
culture fluid were determined at various times. To induce CNO, 0.1 mM
KCN was added after 24 h of cultivation and cells were harvested 3 to 5 h thereafter by centrifugation at 12,000 × g
for 15 min. The cells were washed in
Na2HPO4-KH2PO4 (Na-K)
phosphate buffer (pH 7.0) and stored at
70°C until cell extracts
(150,000 × g [high-speed supernatants]) were
prepared as previously described (26). Extracts were further
fractionated by ultrafiltration through Centriplus 10 and 30 concentrators (Amicon) where indicated in Results. Cyanide
disappearance after its addition to cultures was determined by removing
samples at periodic intervals and measuring the remaining cyanide
concentration by the colorimetric assay of Lambert et al.
(27). The protein content in cell extracts was determined by
the modified Lowry assay with bovine serum albumin as a standard
(29).
CNO-catalyzed transformations.
Routine assay of CNO activity
was determined by measuring the initial rate of cyanide disappearance
from reaction mixtures as described previously (26, 43).
Reaction mixtures in 250 µl contained 3 to 10 mg of protein
ml
1 (200 µl), 2mM KCN (5 µl), 4 mM NADH (10 µl),
and Na-K phosphate buffer (pH 7.0) (35 µl), and reactions were
initiated with NADH. The specific activity for CNO when it was measured
in this manner was 30 nmol of cyanide consumed min
1 mg of
protein
1. CNO activity towards the cyanohydrins was
assayed by measuring 14CO2 or NH3
production from the 14CN-labeled substrates
(Pyr-14CN and Kg-14CN). For this purpose,
reaction mixtures were supplied with the same components as described
above except that cyanohydrin was substituted for KCN. Reaction
components were added to uncapped 2-ml high-performance liquid
chromatograaphy (HPLC) vials, which were placed inside separate
15-ml-capacity crimp-seal vials (Pierce Chemical Co., Rockford, Ill.).
These vials were stoppered before unlabeled (2 mM) and labeled (1 to 2 µCi) cyanohydrins were injected. Reactions were initiated by the
injection of NADH, and the vial assembly was incubated with shaking at
30°C. At various times, reactions were terminated by the addition of
25 µl of 0.5 N H2SO4 to the internal vial
(which served also to volatilize 14CO2 present
as H14CO3
). NaOH (4 N) was then
added to the outer crimp-seal vial compartment, and the vial assembly
was allowed to incubate for an additional 30 min to trap
14CO2 as Na2
14CO3. Radioactivity as
Ba14CO3 in both the internal HPLC and outer
crimp-seal vial compartments was then recovered following fractionation
with BaCl2 as described previously (26, 43), and
radioactivity was counted in a liquid scintillation counter.
Ammonia production from cyanohydrins was determined colorimetrically by
the indophenol method of Fawcett and Scott (
11).
No evidence
for
14CO
2 or NH
3 production from
the radiolabeled cyanohydrins was observed
in controls incubated in the
absence of cell
extract.
Determination of
-keto acids.
-Keto acids in culture
fluids were analyzed by HPLC with a Rainin-Varian HPLC equipped with a
Knauer UV detector. Following removal of cells in a microcentrifuge,
samples were acidified with concentrated H2SO4
to pH 2.0 and 10-µl samples were injected onto a Bio-Rad Aminex
HPX-87H ion-exclusion column at ambient temperature. Elution was
performed isocratically in aqueous mobile phase (pH 2.0) containing
0.015 N H2SO4 and 0.00034 M ethylenediamine tetraacetic acid maintained at a flow rate of 0.6 ml
min
1. The concentration of each keto acid was determined
from the peak area detected at 210 nm and quantitated with a Rainin
Dynamax data acquisition system.

-Keto acids were also determined by thin-layer chromatography
following derivatization as the 2,4-dinitrophenylhydrazones
(
12,
21). Compounds were derivatized by incubating samples
in a 1:2
ratio with 2,4-dinitrophenylhydrazine (0.1% in 2 N HCl)
for 10 min.
Derivatized compounds were extracted into an equal
volume of
ethylacetate, and samples were spotted onto Silica Gel
60 F-254 sheets
(Alltech, Deerfield, Ill.) and chromatographed
in a solvent system
containing benzene-tetrahydrofuran-acetic
acid (60:34:4). Pyr and

Kg
were also determined with lactate
(EC 1.1.1.27) and glutamate
dehydrogenase (EC 1.4.1.2),
respectively.
Identification of cyanohydrins as reaction products.
The
cyanohydrins formed from reactions of cyanide with, respectively, Pyr
and
KG were identified by 13C nuclear magnetic resonance
(NMR) spectroscopy. Culture fluid from cells grown for 24 h in
minimal GA medium was concentrated 50-fold by lyophilization in a
Speed-Vac (Savant) and incubated with K13CN (5 mg
ml
1) in a sealed 2-ml HPLC vial at 30°C for 30 min
until no free cyanide could be detected. The reaction contents were
transferred to an NMR tube and analyzed on a Varian GEM 200 instrument
at 50 MHz. 13C resonances (broad-band proton decoupled)
were compared to that of tetramethylsilane (0 ppm) as an external
reference. To obtain spectra in which protons and carbon are coupled,
samples were analyzed in the gated decoupled mode by using software
available with the spectrometer. In this mode, the proton decoupler is
off at the time of the initial observed pulse in the 13C
observation channel, which affords a proton-coupled 13C-NMR
spectrum with the signal intensity gain resulting from nuclear Overhauser enhancement (17).
Cyanide antagonism by
-keto acids.
Cyanide antagonism by
Pyr and
Kg (or culture fluids containing the keto acids) was
determined by adding these
-keto acids to minimal GA medium
containing KCN as a growth inhibitor and 9 mM
(NH4)2SO4 as the nitrogen source.
Each keto acid was added at 1 mM to 10 ml of minimal medium in
40-ml-capacity crimp-seal culture bottles (Pierce). KCN at various
concentrations (0.1 to 1.0 mM) was added by injection, the bottles were
allowed to incubate for 30 min at room temperature before cells were
added (1% inoculum), and the A540 was
determined after 24 h of incubation. The inoculum for growth was
cultivated in GA medium for 48 h before cells were harvested,
washed twice in sterile Na-K phosphate buffer (pH 7.0), and suspended
in the original volume of sterile minimal medium. Keto acids present in
culture fluids were concentrated by lyophilization and filter
sterilized before being added to a concentration estimated by HPLC to
be 1 mM.
Chemicals and analytical methods.
Pyr and
-Kg cyanohydrin
were prepared in solution by incubating keto acid with KCN until all of
the available cyanide was consumed. The standard reaction mixture
containing 80 mM keto acid and 20 mM KCN was incubated for 30 min,
which yielded a solution with a 20 mM concentration of cyanohydrin.
14C-labeled pyruvate (Pyr-14CN) and
ketoglutarate cyanohydrin (Kg-14CN) were prepared similarly
except that reaction mixtures contained 67 mM keto acid and 18.2 mM
K14CN (1 mCi ml
1). This gave 33 µCi of
labeled cyanohydrin ml
1, of which 1 to 2 µCi was
supplied to enzymatic reaction mixtures. KCN (97%) and
K13CN (99 atom%) were obtained from Aldrich (Milwaukee,
Wis.). K14CN (54 mCi mmol
1, 2.0 GBq
mmol
1) was purchased from DuPont, NEN Research Products
(Boston, Mass.). All other chemicals were of the highest purity
available commercially. Spectrophotometric determinations were
conducted either with an LKB Ultraspec II or with a Perkin-Elmer Lambda
6 UV-visible-light spectrophotometer.
 |
RESULTS |
Identification of
-keto acids as cyanide-scavenging agents.
Previous studies showed that cyanide removal from nitrogen-depleted
cells of NCIMB 11764 was caused by a nonenzymatic reaction with a
metabolite excreted into the medium (4). Attempts to isolate the metabolite revealed that the cyanide-removing activity consistently copurified with the iron-chelating activity, possibly suggesting the involvement of a siderophore. Strong absorption in the
UV range of the partially purified metabolite was consistent with the
presence of a siderophore, but attempts to demonstrate that
cyanide-removing activity was associated with such compounds (e.g.,
pyoverdin, pyochelin, and salicylate [1]) in
Pseudomonas strains were unsuccessful. Efforts to identify
the metabolite by gas chromatography-mass spectrometry also met with
limited success, but the presence of a small-molecular-weight organic acid that displayed both cyanide-removing and iron-chelating activity was demonstrated. Further analyses of culture fluids by ion-exclusion HPLC confirmed the presence of not one but two major organic acids. Moreover, both compounds completely disappeared when culture fluids were treated with KCN just prior to injection, suggesting strongly that
the two species were responsible for cyanide removal. These findings
find analogy with earlier reported observations of a similar bleaching
effect at A210 when a partially purified product of unknown identity was treated with KCN (4). A comparison of the elution times for the unknown metabolites with those of various
organic acid standards revealed the identities of the two as Pyr (10.26 min) and
Kg (9.42 min). This was also confirmed by thin-layer
chromatography of the 2,4-dinitrophenylhydrazones (Rfs of Pyr, 0.42 and 0.65 [two
stereoisomers]; Rf of
Kg, 0.25) and by
enzymatic means. In the latter case culture filtrates (or fractions
thereof) stimulated the rate of NADH oxidation in a substrate-dependent
manner when they were added to reaction mixtures supplied with either
lactate dehydrogenase or glutamate dehydrogenase (data not shown).
Evidence that biologically formed Pyr and

Kg were responsible for
the disappearance of cyanide from culture fluids of NCIMB
11764 as
previously described (
4) was provided by results showing
a
direct correlation between the two during growth (Fig.
1). Both
the cyanide-removing activity
and the concentration of keto acids
in the culture fluid during the
first 24 h of cultivation were
low, but after this they both
increased in a parallel fashion.
The results in Fig.
1 show that the
maximum cyanide-removing activity
(760 µmol of cyanide removed
min
1 ml of culture fluid
1) was recovered
after 72 h of cultivation and was correlated with
a maximum
accumulated concentration of keto acid of 23 mM (20
mM Pyr and 3 mM

Kg). The results further show that cells reached
stationary phase
after 24 h of cultivation on minimal GA medium
but that glucose
consumption continued long after this, presumably
because glucose was
converted into keto acids in the absence of
available nitrogen. Control
experiments showed that cyanide was
also rapidly removed from aqueous
solutions of commercial Pyr
and

Kg. Reaction rates were
concentration dependent, and kinetic
experiments suggest a reaction
mechanism that is second order
(
5). Preliminary estimates of
the rate coefficients for Pyr
and

Kg (at 2 mM) towards cyanide were,
respectively, 38 and 21
µM cyanide removed min
1.
Separate analyses showed also that Pyr and

Kg were present
in cell
extracts (150,000 ×
g [high-speed supernatants]).
Following
fractionation of extracts by ultrafiltration, we observed the
removal of cyanide from fractions containing molecular species
of less
than 10,000 Da and less than 0.1 mg · ml of protein
1.
When analyzed by HPLC, both Pyr and

KG were detected at a combined
concentration of about 0.5 mM (data not shown).

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FIG. 1.
Growth profile, glucose consumption, -keto acid
excretion, and cyanide removal from culture fluid of P. fluorescens NCIMB 11764 cultivated in minimal GA medium.
Cyanide-removing activity was determined by measuring the remaining
cyanide concentration at periodic intervals after 2 mM KCN was injected
into sealed vials containing 0.25 ml of culture fluid. Glucose was
determined with glucose oxidase (EC 1.1.3.4) according to the
specifications of the manufacturer (Sigma). See Materials and Methods
for further analytical details. Data shown are typical results of two
replicate experiments.
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Identification of cyanohydrin reaction products.
Cyanide is
known to add readily to carbonyl compounds, including Pyr, for which it
was reported over 40 years ago that the cyanohydrin is formed as the
corresponding reaction product (14, 32). However, the
description of cyanohydrins in general has received limited attention.
Therefore, rigorous identification of reaction products by
13C-NMR spectroscopy was performed. Two compounds
(121.24 ± 0.14 [compound A] and 122.09 ± 0.13 [compound
B] ppm) were detected following the consumption of K13CN
by culture fluid as shown in Fig. 2.
These compounds correspond, respectively, to ketoglutarate cyanohydrin
(2-cyano-2-hydroxyglutaric acid [designated Kg-CN]) and pyruvate
cyanohydrin (2-cyano-2-hydroxypropanoic acid [designated Pyr-CN]),
based on the fact that identical chemical species were also detected
when K13CN was consumed by the authentic keto acids.
Further evidence for the identity of each was provided by their
carbon-proton-coupled spectra (Fig. 2 [inset]). These data show
triplet and quartet patterns for the Pyr-13CN and
Kg-13CN compounds, respectively, and are consistent with
the spin interactions expected between the labeled carbon and adjacent
protons on the
-carbon in each compound. The low magnitude of
coupling constants (Fig. 2) is further indication of nonadjacent
carbon-proton spin interactions (39). The cyanohydrins were
further identified by HPLC. For example, the bleaching effect that
cyanide had on the detection of Pyr and
Kg as described above was
accompanied by the appearance of two new chemical species eluting at
7.32 and 8.0 min. These were identified, respectively, as Kg-CN and Pyr-CN by comparing the elution times with those of compounds formed
when authentic Pyr and
Kg reacted with KCN.

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FIG. 2.
13C-NMR spectra of reaction products
generated after K13CN (5 mg ml 1) was added to
culture fluid concentrated 50-fold from cells of P. fluorescens NCIMB 11764 grown for 24 h in GA minimal medium.
Analysis was carried out at 50 MHz, and results were referenced against
results with tetramethylsilane as an external standard. The inset shows
13C-1H-coupled spectra of products A and B,
which correspond, respectively, to Kg-CN and Pyr-CN (whose structures
are shown).
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Enzymatic oxidation of the cyanohydrins by CNO.
An earlier
study showed that cell extracts induced for CNO transform the reaction
product formed when K14CN is consumed by culture fluids
into 14CO2 and NH3 (4).
These results were very interesting and indicated that the reaction
product, whatever its nature, was capable of being further metabolized.
Since the keto acids were shown to react with cyanide, giving
cyanohydrins as reaction products, it seemed logical to think that the
cyanohydrins rather than free cyanide might be the true substrates for
further enzymatic attack. To verify this, we performed additional
experiments to show that cell extracts could oxidize the authentic
cyanohydrins when they were provided as the 14CN-labeled
substrates. Figure 3 shows that both
Pyr-14CN and Kg-14CN were oxidized in a
time-dependent manner and that 14CO2 was formed
as a major reaction product. Since no conversion was observed with
extracts uninduced for CNO (data not shown), or when oxygen and NADH
were omitted from reaction mixtures, the involvement of CNO in
catalyzing conversion was inferred. This involvement was further
suggested by the growth results obtained when Pyr-CN and Kg-CN were
provided as sole nitrogen sources for the wild type and a mutant strain
(JL102) shown previously to be defective in CNO production
(26). Figure 4 shows that both compounds supported the growth of the wild type but not the mutant strain, the interpretation being that the wild type is able to take up
the cyanohydrin and convert it to ammonia but that the mutant cannot.
Evidence that ammonia is indeed formed enzymatically was provided by
results demonstrating its formation when the cyanohydrins were oxidized
by cell extracts (Fig. 3); however, no appreciable accumulation was
observed because rapid assimilation into amino acids presumably
occurred in the presence of the keto acids generated as reaction
coproducts. The fact that ammonia accumulation was demonstrated in an
earlier study (4) in which the putative cyanohydrins were
supplied as substrates in the presence of a slight excess of KCN (which
inhibits further ammonia consumption) provides further evidence that
indeed ammonia is enzymatically formed.

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FIG. 3.
Time course for 14CO2 formation
from Pyr-14CN and Kg-14CN catalyzed by cell
extracts from cyanide-induced cells of P. fluorescens NCIMB
11764. Reaction mixtures contained 4 mM NADH where indicated below and
2 mM (1 to 2 µCi) substrate. and , Pyr-14CN under
aerobic (with NADH) and anaerobic (without NADH) conditions,
respectively; and , Kg-14CN under aerobic (with
NADH) and anaerobic (without NADH) conditions, respectively. Each value
is the average of results from three separate experiments. Standard
errors ranged from 5 to 15% but are not shown for clarity.
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FIG. 4.
Growth response of the wild type and mutant strain JL102
of P. fluorescens NCIMB 11764 towards Pyr-CN and Kg-CN
supplied as the sole nitrogen sources. Washed cells having previously
been grown in minimal GA medium for 24 h were provided as the
inoculum (1%), and each cyanohydrin was supplied at 1 mM. Data shown
are typical of results of two replicate experiments.
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Cyanide detoxification by excreted
-keto acids.
The facile
reaction between cyanide and Pyr and
Kg suggested that these
compounds might serve as effective cyanide detoxification agents.
Reports of cyanide antagonism by Pyr and
Kg when they were
administered to ascites tumor cells (6) or mice (7, 36) or when they were added to reaction mixtures supplied with cytochrome c oxidase (EC 1.9.3.1), which is strongly
inhibited by cyanide (9), supported this hypothesis.
However, to our knowledge no prior reports describing the protection of
bacteria from cyanide poisoning by these compounds existed. Therefore, Pyr,
Kg, or culture fluids containing these compounds were added to
cells of NCIMB 11764 and the effect on growth inhibition by KCN was
determined. Consistent with the results of an earlier study
(37), the MIC for KCN in the absence of the keto acids was
shown to be 0.3 mM. However, in the presence of 1 mM Pyr or
Kg (or
the equivalent amount in culture fluid), the MIC increased twofold (0.6 mM), indicating that significant protection was conferred (data not
shown). These results suggested that the excretion of these compounds
may protect cells from the lethal effects of cyanide and that
detoxification might represent an important preliminary step in the
further utilization of cyanide as a growth substrate. To further
establish these possibilities, cells were cultivated on KCN and the
relationship between keto acid accumulation, cyanide consumption, and
growth was determined (Fig. 5). For
comparative purposes, cells used for inocula were either washed or
unwashed prior to being transferred to minimal medium supplied with KCN as the growth substrate. Although a number of inferences may be drawn
from the data presented in Fig. 5, the fact that a 48-h lag period was
observed in the culture supplied with a washed cell inoculum (Fig. 5B)
suggests that in the absence of keto acids (removed during the
cell-washing procedure) growth on KCN is severely impaired. Following
48 h of incubation, a moderate growth increase occurred. This
increase was accompanied by the appearance of keto acids in the medium,
thus indicating that growth and the accumulation of keto acids are
physiologically linked. It is important to note that the keto acids are
effectively titrated out when they are present at low concentrations in
comparison with the concentration of available cyanide and that only
when all of the cyanide has been consumed does their accumulation
become evident.

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FIG. 5.
Relationship between the appearance of -keto acids in
the culture medium and growth on cyanide as the sole nitrogen source
during fed-batch cultivation of cells of P. fluorescens
NCIMB 11764. (A) The entire culture (200 ml of cells plus culture
fluid) after growth of cells for 48 h in GA medium (unwashed
inoculum) was transferred to 2 liters of nitrogen-free minimal medium
containing 20 mM glucose as the carbon source. (B) The cells from a
200-ml culture grown in GA medium (washed inoculum) were harvested,
washed in sterile Na-K phosphate buffer (pH 7.0), and resuspended in
200 ml of sterile nitrogen-free minimal medium before being
transferred. At the times indicated, KCN (0.25 mM) was added and the
remaining cyanide concentration, the level of growth
(A540), and the -keto acid concentration in the medium
were determined by methods described in the text. Data shown are
typical of results of two replicate experiments.
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The results obtained for the culture supplied with unwashed cells
provides further evidence of a requirement for keto acids
(Fig.
5A). In
this case, cyanide disappeared immediately from
the culture and, as
expected, an equivalent decline in the concentration
of detectable keto
acid (supplied in the culture fluid of the
inoculum) was also observed.
Of further significance is the fact
that cyanide disappearance followed
a biphasic pattern; an initial
rapid rate of disappearance was followed
by a 2-h lag, which was
succeeded by a second period of disappearance,
but one in which
the rate of disappearance was lower than initially
observed. What
inferences can be drawn from these results (Fig.
5A)?
The lag
observed between 2 and 4 h presumably represents the time
after
which the initial reaction between cyanide and available keto
acid has reached completion (probably long before the 2-h sample
was
taken). With the reaction having reached equilibrium, no further
cyanide consumption could occur unless the reaction product
(cyanohydrin)
was somehow removed. This removal of the reaction
product, presumably,
is what happens during the second phase of cyanide
consumption
and is concomitant with the induction of CNO, which is
known to
occur about 3 h after cyanide addition to cells (
4,
26).
Thus, once CNO is induced, any available cyanohydrin is
consumed
enzymatically, which in effect serves to pull the reaction in
the direction of the cyanohydrin, thereby favoring further cyanide
consumption. The enzymatic breakdown of cyanohydrins by CNO presumably
also explains the slight rise in the keto acid concentration just
before the onset of growth observed between 3 and 6 h. The growth
pulse following the removal of cyanide is consistent with the
expected
availability of ammonia that is made possible by the
apparent uptake
and enzymatic breakdown of cyanohydrin substrates.
Interestingly, the
keto acid concentration in the medium declined
significantly during
growth, which we interpret to mean that these
compounds can also serve
as carbon sources and may indeed be preferred
over glucose supplied in
the medium. Once growth ceased due to
nitrogen depletion (at about
24 h) a transient rise in the keto
acid concentration occurred but
declined instantaneously, as expected,
when KCN was again pulsed into
the medium. An essentially similar
relationship between the pattern of
growth, cyanide disappearance,
and accumulation of keto acids was
observed following the second
(24 h) and final pulse of KCN (48 h) made
to the
medium.
 |
DISCUSSION |
Previous studies of cyanide utilization in P. fluorescens NCIMB 11764 showed that in order to achieve growth on
cyanide it was necessary to grow cells in fed-batch mode by pulsing KCN
into the medium at a low concentration (less than the MIC [0.3 mM]) (15, 25). Under these conditions, growth lags somewhat
behind cyanide consumption, which allows us to infer the involvement of
several biochemical events. The results presented in this paper now
provide an explanation for these findings and show that cyanide loss
from cultures independent of that catalyzed by CNO occurs by a chemical
reaction with excreted
-keto acids. Both Pyr and
Kg were detected
in the culture fluids of cells cultivated on limiting amounts of
ammonia (Fig. 1) or KCN (Fig. 5) and reacted facilely with cyanide to
give the corresponding cyanohydrins as reaction products. These were
further metabolized by cell extracts to give ammonia and carbon dioxide
as reaction products, thus helping to explain how cellular nitrogen is
acquired from cyanide as a growth substrate. The results presented here
provide the basis for a new mechanism of cyanide utilization in which
-keto acids play an essential role (Fig.
6). Accordingly, we propose that two
steps are involved, one being the initial detoxification of cyanide by
-keto acids in the extracellular fluid and the second being the
further metabolism of the cyanohydrin by CNO.

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|
FIG. 6.
Proposed pathway for cyanide assimilation by P. fluorescens NCIMB 11764. R is CH3 and
CH2CH2COOH for Pyr-CN and Kg-CN,
respectively.
|
|
The reaction between cyanide and the keto acids is consistent with
cyanide's known tendency to attack to carbonyl compounds as a
nucleophile (32). The protection these compounds conferred on NCIMB 11764 against cyanide inhibition finds further analogy with
reports describing the ability of Pyr and
Kg to act as cyanide antagonists (6, 7, 9, 36). Therefore, the excretion of these
compounds appears to confer on cells, albeit fortuitously, a rather
novel mechanism of cyanide tolerance. Further utilization as a growth
substrate then appears to be dependent on the ability to transport the
cyanohydrins into the cell and induce specific enzymes for their
degradation. NCIMB 11764 is capable of performing both these functions,
as was evidenced by its ability to oxidize (Fig. 3) and grow on (Fig.
4) the cyanohydrins as substrates. Although the complete mechanism by
which the cyanohydrins are metabolized remains to be investigated, the
fact that cyanide-induced extracts were required and conversion was
both oxygen and reduced-pyridine nucleotide (NADH) dependent (Fig. 3)
provides strong evidence that CNO is involved. This possibility is
further supported by results showing that a CNO-defective mutant known
to be incapable of growth on cyanide was also unable to grow when it
was provided with the cyanohydrin(s) (Fig. 4). Indeed, our data suggest
that the true substrate for CNO is not free cyanide but rather the cyanohydrin. The fact that the cyanohydrin is less toxic than free
cyanide (CN
-HCN) and probably also significantly less
inhibitory to CNO, which by analogy with other oxygenases is probably a
metalloenzyme, leads to a reasonable interpretation for why the
cyanohydrin may be the preferred substrate. However, an explanation for
how cell extracts can catalyze the conversion of free cyanide to
CO2 and NH3 in the absence of exogenously added
keto acids, as was routinely demonstrated in previous studies (16,
26, 43), is required. The explanation for this, we propose, lies
in the fact that small amounts of Pyr and
Kg (0.5 mM) remain present
when cell extracts are prepared. Therefore, when KCN is added to
enzymatic reaction mixtures, it presumably reacts instantaneously with
Pyr and
Kg to yield the cyanohydrins. These in turn are immediately
turned over by CNO, in effect, recycling the keto acids for further
reaction with cyanide.
The disappearance of cyanide independent of that catalyzed by CNO was
originally observed in ammonia-grown cultures to which cyanide was
added as an enzyme inducer (4). We now demonstrate that this
phenomenon is attributed to the accumulation of keto acids and show
that the disappearance of cyanide also occurs when cells are cultivated
on KCN (Fig. 5). Moreover, the fact that growth on KCN did not occur or
at least was severely impeded when keto acids were absent from the
medium provides strong evidence that these compounds are necessary for
cyanide utilization. The key factor eliciting their accumulation,
however, is not the presence of cyanide per se but nitrogen
deprivation. This finding is consistent with other reports of keto acid
accumulation by bacteria cultivated under related conditions of
nitrogen starvation or some other form of growth limitation (10,
33, 35).
The excretion of keto acids has importantant implications for
understanding the mechanism of microbial cyanide tolerance and utilization in nature. Since cyanide arises naturally through plant,
fungal, and bacterial cyanogenesis (2, 24, 34), the
excretion of keto acids may confer on cells a natural means of
acquiring cyanide tolerance. Moreover, since nitrogen (or other growth
factors) is often limiting in the environment, it may be that the
excretion of keto acids is a natural phenomenon that occurs
irrespective of the ability to grow on cyanide. If this is so, then
many bacteria may be able to acquire cyanide tolerance by keto acid
excretion. Experiments to confirm this hypothesis by screening other
bacteria for keto acid-linked cyanide resistance are under way in our
laboratory. However, tolerance to cyanide and the ability to utilize it
for growth are probably physiologically independent and only bacteria
with the genetic capacity for elaborating enzymes, such as CNO, which
catalyze cyanohydrin breakdown may be able to grow in its presence. The
added selective advantage this ability may confer on cells is the
ability to survive on cyanide under environmental conditions where it
is the only available nitrogen source. Since CNO has never before been
described for any other organism, efforts to isolate this enzyme from
P. fluorescens NCIMB 11764 and investigate the further
mechanism of cyanohydrin oxidation are under way. These and related
studies of the biochemistry of cyanide utilization are sure to shed
further light on the unique mechanism microorganisms have adapted for
interacting with this notorious toxic natural product in the biosphere.
 |
ACKNOWLEDGMENTS |
We thank Barney J. Venables, Trac Laboratories, Inc., Denton,
Tex., for gas chromatography-mass spectrometry analyses, which helped
establish that the metabolite in extracellular fluids responsible for
cyanide removal was an organic acid. We also thank He Huang and Michael
Richmond for assistance with 13C NMR and helpful discussions.
This work was supported by the National Science Foundation (MCB
9808653) and the University of North Texas Organized Faculty Research Fund.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Biological Sciences, University of North Texas, Denton, TX 76203. Phone: (940) 565-2037. Fax: (940) 565-3821. E-mail:
kunz{at}cas1.unt.edu.
 |
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