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Applied and Environmental Microbiology, December 1998, p. 4720-4728, Vol. 64, No. 12
0099-2240/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Molecular Cloning and Functional Expression in
Lactobacillus plantarum 80 of xylT, Encoding the
D-Xylose-H+ Symporter of
Lactobacillus brevis
Stéphane
Chaillou,1,2
Yeou-Cherng
Bor,3
Carl A.
Batt,3
Pieter W.
Postma,1 and
Peter H.
Pouwels1,2,*
EC Slater Institute, BioCentrum, University
of Amsterdam, 1018 TV Amsterdam,1 and
Department
of Molecular Genetics and Gene Technology, TNO Nutrition
and Food Research Institute, 3700 AJ Zeist,2
The Netherlands, and
Department of Food Science, Cornell
University, Ithaca, New York 148533
Received 25 June 1998/Accepted 28 September 1998
 |
ABSTRACT |
A 3-kb region, located downstream of the Lactobacillus brevis
xylA gene (encoding D-xylose isomerase), was cloned
in Escherichia coli TG1. The sequence revealed two open
reading frames which could code for the D-xylulose kinase
gene (xylB) and another gene (xylT) encoding a
protein of 457 amino acids with significant similarity to the
D-xylose-H+ symporters of E. coli, XylE (57%), and Bacillus megaterium, XylT (58%), to the D-xylose-Na+ symporter of
Tetragenococcus halophila, XylE (57%), and to the L-arabinose-H+ symporter of E. coli, AraE (60%). The L. brevis xylABT genes showed an arrangement similar to that of the B. megaterium
xylABT operon and the T. halophila xylABE operon.
Southern hybridization performed with the Lactobacillus pentosus
xylR gene (encoding the D-xylose repressor protein)
as a probe revealed the existence of a xylR homologue in
L. brevis which is not located with the xyABT locus. The existence of a functional XylR was further
suggested by the presence of xylO sequences upstream of
xylA and xylT and by the requirement of
D-xylose for the induction of D-xylose
isomerase, D-xylulose kinase, and D-xylose
transport activities in L. brevis. When L. brevis was cultivated in a mixture of D-glucose and
D-xylose, the D-xylose isomerase and
D-xylulose kinase activities were reduced fourfold and the
D-xylose transport activity was reduced by sixfold, suggesting catabolite repression by D-glucose of
D-xylose assimilation. The xylT gene was
functionally expressed in Lactobacillus plantarum 80, a
strain which lacks proton motive force-linked D-xylose
transport activity. The role of the XylT protein was confirmed by the
accumulation of D-xylose in L. plantarum
80 cells, and this accumulation was dependent on the proton motive
force generated by either malolactic fermentation or by the metabolism
of D-glucose. The apparent affinity constant of XylT for
D-xylose was approximately 215 µM, and the maximal
initial velocity of transport was 35 nmol/min per mg (dry weight).
Furthermore, of a number of sugars tested, only
6-deoxy-D-glucose inhibited the transport of
D-xylose by XylT competitively, with a
Ki of 220 µM.
 |
INTRODUCTION |
Lactobacillus brevis is a
ubiquitous microorganism that can be isolated from various biotopes,
such as milk, fermented vegetables, and the intestinal tracks of
animals and that is often found as a spoilage contaminant in beer
production (7, 11, 26). Fermented plant materials, one of
the predominant ecological niches of L. brevis, are
usually rich in hemicellulose fibers and therefore represent an
abundant source of D-xylose, from which L. brevis can derive energy for growth. The fermentation of
D-xylose is not a common property among
Lactobacillus species. Besides L. brevis and
Lactobacillus pentosus, most of the other lactobacilli are
unable to utilize D-xylose as an energy source. The ability to ferment D-xylose, however, could improve the properties
of heterofermentative lactic acid bacteria that are commonly used in
fermented-food technology. Lactobacillus plantarum, for
instance, is widely used to stimulate the fermentation of silage,
sourdough, and diverse vegetables, such as the white cabbages used in
the production of sauerkraut. L. plantarum cannot
ferment D-xylose, although this property could potentially
improve the competitive position of this organism in the
fermentation of plant materials and would conform to the food-grade
status of recombinant strains. The use of D-xylose
metabolism as a food-grade selection marker for heterofermentative
lactobacilli has already been proposed by Posno et al. (24).
A plasmid, pLP3537-xyl, harboring the D-xylose
catabolizing genes of L. pentosus, was used to
complement the inability of Lactobacillus casei ATCC 393 to
metabolize this pentose. However, the growth of the L. casei transformants carrying pLP3537-xyl was slow compared to that
of L. pentosus, which naturally ferments
D-xylose. In that study, the authors postulated that the
transport of D-xylose in L. casei was
the limiting function for growth on this compound. Indeed,
pLP3537-xyl lacked a specific transporter for D-xylose, the
absence of which could limit its general use.
Consequently, we aimed at the characterization and functional analysis
of a D-xylose transporter from a Lactobacillus
species that could be used to optimize the food-grade vector based on D-xylose fermentation. So far, no evidence indicating the
presence of a specific transporter for D-xylose in
L. pentosus has been obtained, but the situation could
be different with L. brevis.
The xylA gene (encoding D-xylose isomerase) of
L. brevis has previously been cloned and sequenced
(2). Sequencing of regions downstream of the xylA
gene revealed the presence of another, albeit incomplete, gene:
xylB (encoding D-xylulose kinase). The possibility that one or more genes specifying a D-xylose
transporter of L. brevis could be located in the
surrounding of the xylA and xylB genes was investigated.
We report here the cloning of the xylT gene encoding the
proton motive force (PMF)-linked D-xylose transport system
of L. brevis and its functional expression in
L. plantarum 80 by using a Lactobacillus
expression system suitable for developing a food-grade vector based on
D-xylose fermentation. We also provide information on the
arrangement of the xyl genes in L. brevis,
an arrangement that is similar to that which is found in Bacillus
megaterium (30) and Tetragenococcus
halophila (33), except that a repressor gene,
xylR, is lacking in front of xylA in
L. brevis. We also show that the L. brevis D-xylose transporter is remarkably similar to
XylE of Escherichia coli (8) and T. halophila and to XylT of B. megaterium in its primary
sequence and substrate specificity.
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MATERIALS AND METHODS |
Bacterial strains, plasmids, and growth conditions.
E.
coli DH5
(supE44
lacU169
(
80lacZ
M15) hsdR17 recA1 endA1 gyrA96 thi-1
relA1) was used for the propagation of the
Lactobacillus-E. coli shuttle vectors, and
E. coli TG1 [supE hsd
5 thi
(lac-proAB) F'(traD36 proAB+
lacIq lacZ
M15)] was used for the
subcloning of the L. brevis xylABT locus. They were
maintained on Luria-Bertani broth, and ampicillin was added at a
concentration of 100 µg/ml when necessary. Lactobacillus strains were cultivated in MRS medium (Difco Laboratories, Detroit, Mich.) or in M medium (19) supplemented with 0.5 or a 1%
(wt/vol) concentration of the indicated sugar. Erythromycin (5 µg/ml)
was used for the selection. Identification of L. plantarum 80(pLPA9) transformants was performed on M medium agar
plates containing 25 mM D-glucose, 60 µg of
5-bromo-4-chloro-3-indolyl-
-D-glucuronide per ml (Sigma
Chemicals Co., St. Louis, Mo.), and 100 mM potassium phosphate (pH
7.4).
Inverse PCR.
Genomic DNA was extracted from L. brevis as described previously (2). DNA was restricted
with ApoI, BclI, EcoRV, and
Sau3AI, and the restricted fragments were self-ligated with
T4 DNA ligase. To amplify the xylT gene and the remainder of
the xylB gene, the ligation mixtures were amplified by using
Taq DNA polymerase (GIBCO BRL, Gathersburg, Md.) and two
sets of primers: either Sen-2 (5'-AGTCTTACGACCAGCGAT-3'), specifying codons 93 to 99 of the xylB gene, and
Ansen-4 (5'-GGAGTAACTTAAGCCTTC-3'), specifying anticodons 74 to 79 of the xylB gene, or Sen-3
(5'-GGTGGTTGGTCAGGTTA-3'), specifying codons 230 to 235 of
the xylT gene, and Ansen-5 (5'-CCACTTGGTCATGCTTGT-3'), specifying codons 207 to 212 of the xylT gene. The
purified PCR fragments were restricted with the appropriate restriction
enzymes and ligated into pUC19, yielding plasmids pYCBS0.8
(Sau3AI), pYCBEV1.5 (EcoRV), and pYCBBc2.3
(BclI) or into pUC18, yielding plasmid pYCBA2.0
(ApoI) (see Fig. 1A). Several randomly selected clones were sequenced.
Construction of the Lactobacillus xylT expression
plasmid, pLPA9.
The construction of plasmid pLPA9 was performed
essentially as described previously for the construction of the
L. pentosus xylP gene expression vector, pLPA6
(5). The xylT gene was amplified from
L. brevis genomic DNA (by using the Expand
high-fidelity system; Boehringer Mannheim) and cloned into the cloning
vector pTUT-MCS2 (5). The forward primer
(5'-CCTTTGGTACCGAACGTCGTAAGGAGCG-3') created a KpnI site (underlined) and a stop codon
(boldface) upstream of the xylT original ribosome binding
site (RBS [italics]). The reverse primer
(5'-TTACCCATGGTGATCCCACCTCTTTCGTAATCG-3') starting 7 nucleotides downstream of the xylT gene
stop codon, generated an NcoI site (underlined) overlapping
the ATG codon (boldface) of the gusA gene from plasmid
pTUT-MCS2. A putative RBS (italics) was also introduced eight
nucleotides upstream of gusA and served as a potential
translation start for this reporter gene. The resulting plasmid was
digested by BglII and XhoI, and the cloning
cassette was introduced between the BamHI and
XhoI sites of the hybrid lactobacillus-E.
coli shuttle expression vector pLP503(t) (25), yielding
pLPA9(t). After NotI digestion and religation, yielding
plasmid pLPA9, the stop codon introduced in the forward primer was
inframe with the first few codons of the ldh gene
(which is part of the ldh expression cassette) and permitted
translation of the native XylT protein. Then, 5 µg of plasmid pLPA9
DNA was used to transform L. plantarum 80 as
described previously (15).
Enzyme assays.
The conversion of D-xylose (200 mM) to D-xylulose by D-xylose isomerase was
measured according to the sorbitol dehydrogenase method as described
previously (3). D-Xylulose kinase activity was
determined by measuring the appearance of ADP formed as a result of the
D-xylulose kinase reaction (4). Beta-xylosidase activity was assayed with
p-nitrophenyl-
-D-xylopyranoside (5 mM), as
described previously for the measurement of
-xylosidase activity in
L. pentosus (4). Enzyme activities were
determined in cell extracts prepared from cells harvested during the
logarithmic phase of growth as described earlier (4), except
that cells (resuspended in 500 µl of 50 mM potassium phosphate buffer
containing 0.5 mM EDTA and 1 mM dithiothreitol) were disrupted by
shaking at full speed (IKA-VIBRAX-VXR; IKA-Labortechnik) for 2 h
at 4°C with 100 mg of glass beads (ca. 0.1 to 0.3 mm in diameter;
Pertorp Analytical). The protein concentration in these samples was
determined by the method of Smith et al. (32).
D-Xylose transport assays.
L.
plantarum 80 cells cultivated in M medium supplemented with 25 mM
glucose and 75 mM L-malate were harvested by centrifugation (5,000 × g, 4°C, 10 min), washed twice with uptake
buffer (50 mM potassium phosphate buffer [pH 6.5 or 4.5] containing 2 mM MgSO4), and resuspended at a concentration of
approximately 30 mg (dry weight)/ml. For the transport assay, cells
were diluted to a concentration of 3 to 5 mg (dry weight)/ml in 800 µl of uptake buffer. Cells were preenergized at 30°C by incubation
with either 50 mM L-malate (at an extracellular pH of 4.5)
for 2 min or by incubation with 5 mM of glucose (at an extracellular pH
of 6.5) for 5 min. Transport was initiated by the addition of
D-[U-14C]xylose (specific activity, 0.4 µCi/mmol; Amersham) at a final concentration of 100 µM. At given
time points, 100-µl samples were taken and diluted in 5 ml of
ice-cold 0.1 M LiCl. The samples were rapidly filtered through glass
fiber filters (Whatman GF/F) and washed with 2 ml of ice-cold 0.1 M
LiCl. The radioactivity on the filter was determined by liquid
scintillation analysis. To determine the initial rate of
D-xylose uptake, the transport reaction was stopped after
20 s by quenching the whole mixture (total volume, 100 µl) in 5 ml of 0.1 M LiCl. Potential competitors or uncouplers were added 5 s before the initiation of the transport reaction, unless indicated
otherwise. Accumulation levels of D-xylose in L. plantarum 80 were calculated by assuming an intracellular volume
of 1.5 µl/mg (dry weight) (10). For the measurement of D-xylose transport in L. brevis, the cells
were grown in M medium supplemented with 25 mM of the indicated sugar
and 25 mM of L-arginine. Transport experiments were
performed essentially as described above for L. plantarum 80, except that the cells were energized at pH 6.5, with
20 mM of L-arginine or 5 mM glucose, and added 2 and 5 min
prior to the start of the transport reaction, respectively. For
L. brevis, D-[U-14C]xylose
(specific activity, 0.1 µCi/mmol) was used at a final concentration
of 500 µM.
DNA manipulation.
All DNA manipulations, including Southern
hybridization, ligation, and transformation of E. coli,
were done according to standard procedures (28). All enzymes
were used according to the specifications of the manufacturers.
Double-stranded DNA sequencing was performed according to the method of
Wang (34). The Blast comparisons and the amino acid Pileup
comparisons were performed by using the Genetic Computer Group programs
through the facilities of the CAOS/CAMM center, Nijmegen, The Netherlands.
Nucleotide sequence accession number.
The complete
nucleotide sequence of the L. brevis xyl locus is
available under GenBank accession number AF045552.
 |
RESULTS |
Cloning of the D-xylulose kinase gene and flanking
regions.
The cloning strategy is summarized in Fig.
1A. Initially, a 2.5-kb
NlaIII/EcoRI region from L. brevis was cloned using a PCR probe generated with primers deduced
from the N-terminal sequence of the L. brevis
D-xylose isomerase and a region conserved among virtually
all bacterial D-xylose isomerases. Its reported sequence contained a 1,347-bp open reading frame (ORF) coding for XylA (2). Within the 2.5-kb NlaIII/EcoRI
sequence, at 107 bp downstream from the xylA stop codon, an
ATG codon at the beginning of an ORF was found. The deduced amino acid
sequence of this ORF showed considerable homology to the N-terminal
amino acid sequence of the E. coli and L. pentosus D-xylulose kinases (2).

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FIG. 1.
(A) Physical map and organization of the L. brevis xylABT locus. The upper part shows the xylB and
xylT cloning strategy. The stem-loop structures indicate the
putative transcriptional terminators. The nucleotide (nt) sequences of
upstream regions of xylA and xylT are depicted in
panels B and C, respectively. The open boxes denote putative 10 and
35 consensus sequences of the promoters. The putative regulatory
elements (cre and xylO) are in boldface italic
letters. The potential RBSs are indicated by asterisks. The beginning
of the deduced amino acid sequence of the xylA and
xylT genes is depicted below the nucleotide sequence. The
putative transcriptional terminator located downstream of the
xylB gene is underlined by thin arrows (panel C). For
clarity, only the NlaIII and Sau3AI sites used
for cloning are depicted.
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The sequence up to the NlaIII site was also determined and
revealed a putative xylO operator site, starting 45 bp
upstream of the xylA start codon, and showing similarity to
xylO operator sites found near the two
D-xylose-inducible promoters of the L. pentosus xylose regulon (4, 19).
35 and
10 promoter
elements (TTGCAT and TATACT), spaced by 16 nucleotides, were present 81 and 59 nucleotides upstream of the
xylA start codon, respectively (see Fig. 1B). In addition, a
putative catabolite responsive element (cre), which is known
to mediate CcpA-dependent catabolite repression in several
gram-positive microorganisms (14, 35), was also found 90 bp
upstream of the xylA start codon. The sequence of the 0.4-kb
region upstream of the xylA gene did not contain any putative ORF in either orientation.
To map the regions surrounding the
xylA gene, a Southern
hybridization analysis was performed on total genomic DNA by using
a
fragment from the
L. brevis xylB gene as a probe. We
found that
a 4.2-kb
HindIII fragment and a 5.8-kb
EcoRI/
SalI fragment located
downstream of the
xylA gene hybridized with the
L. brevis xylB probe. In
Bacillus spp. and other gram-positive
bacteria, the
xylAB operon was shown to be negatively
regulated at the level
of transcription by a repressor protein,
designated XylR (
16,
18,
27,
29,
31). Since a putative
xylO operator site (XylR
binding site) was found in the
promoter region of the
L. brevis xylA gene, another
Southern hybridization analysis to locate a
xylR homologue
was performed with the
L. pentosus xylR gene as
a
probe. A 2.9-kb
EcoRI/
SalI fragment
hybridized to this latter
probe. Based upon a restriction map of the
L. brevis xyl locus
and the nearest possible 2.9-kb
EcoRI/
SalI fragment, the
xylR gene
must be located more than 2 kb upstream or 5 kb downstream
of the
xylA gene. To clone the entire
xylB gene, a
minilibrary
was constructed in
E. coli TG1 by using
size-selected
HindIII
fragments. Although colony
hybridization revealed several positively
hybridizing clones,
restriction analyses revealed that these recombinants
carried inserts
which were much smaller than the expected 4.2
kb and appeared to have
lost most of the sequences downstream
of the
xylB gene. The
deletions were confirmed by DNA sequencing.
The cause of these
deletions is unknown, however, and this dictated
the use of another
approach to clone
xylB.
Since inverse PCR was successfully applied to clone the 432-bp
xylA 5' region (
2), it was also employed to
amplify the
flanking region of
xylB. Results of Southern
hybridization were
used to select restriction enzymes which generated
fragments in
the 0.8- to 2.5-kb range. Size-selected restriction
fragments,
including 2.3-kb
BclI, 1.5-kb
EcoRV,
and 0.8-kb
Sau3AI fragments,
were self-ligated under
conditions favoring the formation of monomeric
circles and amplified by
using primers Sen-2 and Ansen-4 to yield
the
xylB gene and
the flanking region. The sequence of the fragments
obtained was
determined. Based upon this new sequence information,
two additional
inverse PCR primers (Sen-3 and Ansen-5) from the
region
downstream of
xylB were synthesized and then used to amplify
a 2-kb fragment from a religated
ApoI size-selected
population.
This fragment was cloned into pUC18, and its sequence was
determined.
Nucleotide sequence of the xylB and xylT
genes.
The xylB ORF (1,506 nucleotides long) starts
with an ATG codon (located 96 nucleotides after the xylA
stop codon) and terminates with a TAG codon. The xylB gene
codes for a protein of 502 amino acids and showed a high degree of
identical amino acids (66%) when compared to the product of the
L. pentosus xylB gene (data not shown). Another ORF
(1,371 nucleotides long), xylT, begins 222 bp downstream of
the xylB stop codon with an ATG codon and terminates with a
TAA codon. Both the xylB and the xylT ORFs are preceded by putative Shine-Dalgarno sequences. No obvious promoter motifs were found immediately upstream of xylB. However,
starting 110 bp upstream of the xylT start codon, a
xylO sequence was observed, which showed similarity to
xylO found in the upstream region of the L. brevis and L. pentosus xylA genes and in the
upstream region of the L. pentosus xylP gene (Fig. 1C).
35 and
10 promoter elements (TTTCAA and TATGAT),
spaced by 17 nucleotides, were found 145 and 128 bp upstream of
the xylT start codon. Moreover, a putative cre
site overlapping the
35 element was also identified. Potential Rho-independent transcriptional terminator sequences were found within
the noncoding regions after xylA (
G° =
17.1 kcal mol
1), xylB
(
G° =
14.6 kcal mol
1), and
xylT (
G° =
18.4 kcal
mol
1).
Sequence homology of XylT with sugar transporters.
The Blast
computer program (1) was used to search entries in the
Swiss-Prot protein database showing similarity to the deduced amino
acid sequence of xylT from L. brevis. XylT
demonstrated strong similarity throughout the entire sequence to other
bacterial monosaccharide transporters of the "major facilitator
superfamily" (MFS) (13, 20, 22), especially to the
L-arabinose-H+ symporter of E. coli, AraE (60%); the D-galactose-H+
symporter of E. coli, GalP (59.5%); the glucose
facilitator of Zymomonas mobilis, GlfZ (57%); the
D xylose-H+ symporters of B. megaterium, XylT (58%) and of E. coli, XylE (57%); and the D-xylose-Na+ symporter of
T. halophila, XylE (57%). An alignment is presented in
Fig. 2. Surprisingly, the similarity
score shared between XylT of L. brevis and the three
bacterial D-xylose-cation symporters was significantly
lower than the score shared between XylE of E. coli and
T. halophila and XylT of B. megaterium (73 to 81%). Moreover, XylT of L. brevis shared the
highest similarity score with the
L-arabinose-H+ symporter, AraE, of
E. coli.

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FIG. 2.
Comparison of the primary sequences of XylT of
L. brevis (XylT-Lb); GlfZ of Z. mobilis (GlfZ-Zm, Swiss-Prot accession number P21906);
XylT of B. megaterium (XylT-Bm, EMBL gene bank
accession number Z71474); GalP, AraE, and XylE of E. coli (GalP-Ec, Swiss-Prot accession number P37021;
AraE-Ec, Swiss-Prot accession number P09830;
XylE-Ec, Swiss-Prot accession number P09098); and XylE of
T. halophila (XylE-Th, EMBL gene bank
accession number AB009593). The alignment was done by using the Pileup
program (9), and some gaps were introduced to maximize the
alignment. The identical amino acids are shown in white letters on a
solid background. The 12 putative transmembrane segments are indicated
by arrows above the alignment. The numbers on the left of the alignment
correspond to the amino acid positions for each protein.
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Regulation of D-xylose uptake and D-xylose
catabolism in L. brevis.
It is not known whether
D-xylose is required for the expression of the
L. brevis xyl genes. We could, however, identify
putative xylO sequences in the regions upstream of the
xylA and xylT genes, suggesting that their
expression would be induced by D-xylose. Moreover, the
presence of putative cre sites upstream of the
xylA and of the xylT genes suggested a possible
negative regulation by glucose and other carbohydrates. Therefore, the
activity of D-xylose isomerase and D-xylulose
kinase were measured in cell extracts of L. brevis
grown in the presence of D-xylose, D-ribose, L-arabinose, D-glucose, maltose, and a mixture
of D-glucose and D-xylose. Active
D-xylose transport was also measured in L. brevis cells in the presence of an exogenous energy source,
L-arginine or D-glucose (Table
1). D-Xylose isomerase and
D-xylulose kinase activity and the transport of
D-xylose were only detected when cells were grown on
D-xylose. Moreover, the addition of D-glucose to cells growing on D-xylose decreased the total activity
of D-xylose isomerase and D-xylulose kinase by
fourfold, and the D-xylose transport activity was decreased
by sixfold. In addition, it has been demonstrated that the repressor
gene, xylR, of the Bacillus subtilis and
L. pentosus xyl regulons is involved in the negative control of a
-xylosidase and of an
-xylosidase encoding gene, respectively (4, 12, 17). In L. brevis, we
could identify a xylR repressor gene homologue, although it
was not found within the xylABT locus. This finding prompted
us to investigate the presence of
- or
-xylosidase activities in
L. brevis. No
-xylosidase activity could be
detected, but a low level of
-xylosidase activity was detected in
cell extracts with most of the growth substrates (see Table 1).
However, this activity was increased about 10-fold in the presence
of D-xylose, suggesting a mechanism of induction. The
-xylosidase activity was reduced about twofold when both D-glucose and D-xylose were added to the growth
medium compared to that of cells grown on D-xylose only.
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TABLE 1.
D-Xylose transport and D-xylose
catabolic enzyme activities in L. brevis grown on
different carbohydratesa
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Functional expression of the D-xylose transport gene in
L. plantarum 80.
The L. brevis
strain studied here could not be transformed with plasmid DNA when
standard Lactobacillus electrotransformation procedures were
used (unpublished observations). Therefore, the xylT gene
could not be inactivated by plasmid integration to determine its role
in D-xylose uptake in L. brevis. However,
we have recently developed a Lactobacillus expression system
which was used to characterize the
-xyloside transporter of
L. pentosus, XylP (5). Consequently, an
xylT expression vector was constructed, pLPA9 (Fig.
3) and was used to transform
L. plantarum 80, a strain lacking PMF-linked
D-xylose transport activity. To demonstrate that the D-xylose transport gene of L. brevis
was functionally expressed in L. plantarum 80, D-xylose transport activity with
D-[U-14C]xylose was assayed under conditions
in which a PMF was generated from either malolactic fermentation
(21) or glucose fermentation. Under both conditions,
L. plantarum 80 harboring plasmid pLPA9 could transport
and efficiently accumulate significant amounts of D-xylose,
whereas the parental wild-type strain could not (Fig. 4). The initial rates of uptake in
L. plantarum 80(pLPA9) were approximately 9 and 12 nmol/min per mg (dry weight) when L-malate and
D-glucose were the source of the PMF, respectively. The
accumulation level of D-xylose
([D-xylose]in/[D-xylose]out)
after 2 min was around 60 when the PMF was generated by
L-malate uptake and metabolism. The accumulation level was
30-fold when 5 mM glucose was the source of metabolic energy. In
addition, increasing the glucose concentration to 20 mM resulted in a
slower rate of uptake (ca. 3 nmol/min per mg [dry weight]), and in a
fourfold decrease of the D-xylose level of accumulation.
These findings suggest that the metabolism of glucose can negatively
affect the activity of XylT and/or the maintenance of
D-xylose inside the cell. Without L-malate or
glucose as source of the PMF, D-xylose could not be
transported or accumulated in L. plantarum 80(pLPA9).
These results clearly indicate that the xylT gene of
L. brevis encodes a D-xylose transporter.

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FIG. 3.
Structure of the xylT
lactobacillus-E. coli shuttle expression vector
pLPA9(t). The expression cassette of this vector comprises the strong
ldh promoter (Pldh from L. casei ATCC 393), the xylT gene, the E. coli -glucuronidase gene (gusA) used as a marker of
gene expression, and the terminator sequence of the L. plantarum 80 cbh gene (Tcbh
[6]). The two terminator sequences
(Tldh from L. casei ATCC 393 [25]) downstream from the strong
Pldh promoter are used to circumvent instability
of the expression vector in E. coli. These two
Tldh sequences can be eliminated by digestion of
the plasmid with NotI and religation, yielding pLPA9. After
transformation of L. plantarum 80 with plasmid pLPA9,
the transformants expressing the gusA reporter gene can be
selected as described in Materials and Methods.
|
|

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FIG. 4.
D-Xylose uptake by cells of L. plantarum 80(pLPA9) ( ; three independent experiments are
plotted) or L. plantarum 80 wild type ( ). Cells were
preenergized at 30°C by incubation with 50 mM L-malate
for 2 min at an extracellular pH of 4.5 (panel A) or by incubation with
5 mM D-glucose for 5 min at an extracellular pH of 6.5 (panel B). Uptake of 0.1 mM D-[U-14C]xylose
by L. plantarum 80(pLPA9) without PMF-generating
conditions is shown in both panels ( ), and the effect of 20 mM
glucose on the accumulation of D-xylose by L. plantarum 80(pLPA9) is indicated ( ) in panel B. Each experiment
was performed at least in triplicate, and the standard deviation never
exceeded 10%.
|
|
Substrate specificity and kinetic parameters of XylT.
The
kinetic parameters of XylT in L. plantarum 80(pLPA9)
were determined with an L-malate-generated PMF. The
Km and Vmax for D-xylose transport were 215 ± 15 µM and 35 ± 2 nmol/min per mg (dry weight), respectively. The effects of various
sugars or sugar analogs on the initial rate of uptake of
D-xylose were also tested (Table
2). An excess of the test substrate
(50-fold) was added 5 s before the addition of
D-[U-14C]xylose, and the initial velocity of
D-xylose transport was measured (20 s).
D-Xylose transport by XylT was poorly inhibited (20%) by a
50-fold excess of L-arabinose and
methyl-
-D-xylose, but no inhibition could be detected
with methyl-
-D-xylose, D-ribose, D-fucose, and D-galactose.
6-Deoxy-D-glucose and D-glucose inhibited the
transport of D-xylose. The inhibition of
D-xylose transport by 6-deoxy-D-glucose was
found to be competitive (Fig.
5), with a Ki of
220 ± 3 µM. As described above, the metabolism of
D-glucose in L. plantarum 80 affected both
the initial rate of uptake and the accumulation level of
D-xylose. Since the metabolic inhibition of
D-xylose was different with two different concentrations of D-glucose, the role of D-glucose as a potential
competitive inhibitor of D-xylose uptake by XylT could not
be assessed in our assay conditions.

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|
FIG. 5.
Eadie-Hofstee plot of the
D-[U-14C]xylose uptake rate by cells of
L. plantarum 80(pLPA9) as a function of the
D-xylose concentration, without inhibitor ( ) or with 0.5 mM ( ) or 1 mM ( ) 6-deoxy-D-glucose. Cells were
preenergized at 30°C by incubation with 50 mM L-malate
for 2 min at an extracellular pH of 4.5. Rates were calculated after an
uptake of 20 s.
|
|
Role of the PMF components on D-xylose uptake.
At
pH 4.5, the PMF generated by L-malate transport and
metabolism (
160 mV) is composed of an electrochemical membrane
potential, 
(
70 mV) and of an electrochemical proton gradient,
Z
pH (
90 mV), where Z equals 2.3 (RT/F) and R,
T, and F have their usual meanings (21). To
determine the role of these components in the transport of
D-xylose by XylT, the effects of uncoupling agents on the
initial rate of uptake and on the accumulation level of D-xylose were studied (Table
3). The ionophore nigericin
(H+/K+ antiporter), which dissipates the
pH,
decreased the initial rate of uptake and lowered the accumulation level
about 80% when used at a concentration of 0.5 µM or higher. A
similar but stronger effect was obtained with the protonophore carbonyl
cyanide m-chlorophenylhydrazone (CCCP), which collapses the
total PMF.
View this table:
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|
TABLE 3.
Effect of ionophores and of the
F0F1-ATPase inhibitor CCCP on
D-xylose uptake by the L. brevis
XylT transportera
|
|
 |
DISCUSSION |
The aim of this study was twofold. First, we wanted to
characterize a D-xylose transporter from a
Lactobacillus species and, second, we wanted to construct a
system enabling efficient expression of the transporter. The expression
system should be of value in the development of food-grade vectors for
heterofermentative lactobacilli based on D-xylose fermentation.
Similarity between the L. brevis xylABT locus, the
xylABT operon of B. megaterium, and the
xylABE operon of T. halophila.
The cloning
and sequencing of the region downstream from the xylA and
xylB genes of L. brevis revealed the
presence of a potential xyl gene, xylT, encoding
a putative membrane-embedded protein. On the basis of homology between
the primary structure of XylT from L. brevis (further
referred to as XylTLb) and some members of the MFS,
including the low-affinity D-xylose-cation symporters XylE
of E. coli (further referred to as XylEEc),
XylE of T. halophila (further referred to as
XylETh) and XylT of B. megaterium (further
referred to as XylTBm), a
D-xylose-H+ symport activity has been assigned
to XylTLb. The organization of the L. brevis xylABT locus showed similarity to that of the
B. megaterium xylABT operon (30) and the
T. halophila xylABE operon. No tightly linked
xylR gene could be found upstream of xylA in
L. brevis. This finding does not exclude, however, that
the xylR gene in L. brevis may be located in
another operon, perhaps serving to regulate a distinct set of genes.
Preliminary results have indicated that the expression of the
xylABT genes in L. brevis is inducible by
D-xylose and is repressed by D-glucose. Putative xylO sequences (XylR binding sites) and
cre-like elements (CcpA binding sites) upstream of
xylAB and xylT genes strongly suggest a negative
regulation by XylR and CcpA homologues. However, the transcriptional
regulation of the L. brevis xyl locus is not yet known,
and the role of these transcriptional regulators remains to be demonstrated.
Characteristics of XylTLb.
The L. brevis xylT gene was functionally expressed in L. plantarum 80 by using a recently described
Lactobacillus expression system, which confirmed
XylTLb to be a D-xylose-H+
symporter and enabled the determination of some properties of this
transporter. It is interesting to note that throughout the whole
sequence, XylTLb appeared to be more closely related to the
E. coli L-arabinose-H+
transport protein, AraE, than to the bacterial
D-xylose-cation symporters, XylEEc,
XylETh, and XylTBm. This difference
extended to the large gap found between the third and the
fourth putative transmembrane region in the sequence of
XylTLb, AraE, and GalP introduced to optimize the
alignment with XylEEc, XylETh, GlfZ, and
XylTBm. Even though such a homology would suggest a higher
affinity of XylTLb for L-arabinose than for
D-xylose, L-arabinose proved to be a very poor
competitor of D-xylose uptake by XylTLb. This
finding suggests that L-arabinose is presumably not a
physiological substrate for the XylTLb protein. In fact,
the pattern of inhibition of D-xylose transport by several
sugars or sugar analogs indicated that the properties of the
XylEEc and XylTLb transport proteins are very
similar. In contrast to the AraE protein of E. coli,
for which L-arabinose, D-fucose, and
D-xylose are substrates (13), transport of
D-xylose by XylTLb is only inhibited by
6-deoxy-D-glucose (6-methyl-D-xylose) and possibly D-glucose. XylTLb can also
discriminate between D-xylose and D-xylose
analogs with a methyl substitution on the C1 of the pyranoside ring,
since neither methyl-
-D-xylose nor
methyl-
-D-xylose were efficient competitors of
D-xylose transport. A similar specificity was previously found for XylEEc (13). These results indicate
that the primary sequence homology between members of the MFS is
clearly not sufficient to predict their substrate specificity.
Substrate recognition by these proteins may reside in the positions of
specific charged residues (mostly histidine, glutamic acid, or aspartic
acid) located in the hydrophilic regions, which may help to bind the
substrates (for a review, see reference 23). The
alignment shown in Fig. 3, however, did not reveal such conserved
residues in XylTLb, XylTBm, XylEEc,
and XylETh, which could discriminate the
D-xylose-cation symporters from the other
monosaccharide-cation symporters. Nevertheless, the apparent affinity
constant of the XylTLb protein for D-xylose
(215 µM) is substantially higher than the apparent affinity constant
of XylTBm (100 µM) and of XylEEc (60 µM)
for D-xylose (36). Finally, the susceptibility
of D-xylose transport to the protonophore CCCP, which
collapses the PMF, and to the ionophore nigericin, which discharges the
pH, indicates that D-xylose transport by
XylTLb proceeds most likely in symport with a proton.
The metabolism of
D-glucose in
L. plantarum
80, resulted in inhibition of
D-xylose transport via
XylT
Lb. A similar inhibition of
D-xylose
transport could be observed
in
L. brevis when a high
concentration of
D-glucose (>20 mM) was
used to energize
the cells for transport (data not shown). Addition
of
D-glucose decreased the initial rate of uptake and the
overall
accumulation level, suggesting a mechanism which may inactivate
the activity of XylT
Lb. A similar mechanism of inhibition,
called inducer exclusion,
has already been suggested to
regulate methyl-

-
D-thiogalactopyranoside
accumulation in
L. brevis (
36). Whether a
similar mechanism
is active in
L. plantarum 80 and
whether it is responsible for
the inhibition of
D-xylose uptake by a high concentration of
D-glucose
in
L. brevis remains to be
demonstrated.
Development of a D-xylose food-grade vector.
In
this study, we have shown that the Lactobacillus
expression system, pLPA9, allowed the functional expression of a
D-xylose transporter in L. plantarum 80. This plasmid could serve as the basis for the construction of a
food-grade vector based on the metabolism of D-xylose by
cloning of the xylA and xylB genes downstream of
the xylT gene. Such a vector, which makes use of a strong
and constitutive Lactobacillus promoter
(Pldh from L. casei ATCC 393)
may represent a useful tool for improving the catabolic capacity of
heterofermentative lactic acid bacteria that are important in the
fermentation of plant materials and in the production of fermented food.
 |
ACKNOWLEDGMENT |
This work was supported by a grant from the EC BIOTECH program
(contract BIO2-CT92-0137).
 |
FOOTNOTES |
*
Corresponding author. Mailing address: TNO Nutrition
and Food Research Institute, Department of Molecular Genetics and Gene Technology, P.O. Box 360, 3700 AJ Zeist, The Netherlands. Phone: 31-30-6944-462. Fax: 31-30-6944-466. E-mail:
Pouwels{at}voeding.tno.nl.
 |
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