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Applied and Environmental Microbiology, December 1998, p. 4774-4781, Vol. 64, No. 12
0099-2240/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Purification, Characterization, and Molecular
Analysis of Thermostable Cellulases CelA and CelB from
Thermotoga neapolitana
Jin-Duck
Bok,
Dinesh A.
Yernool, and
Douglas E.
Eveleigh*
Department of Biochemistry and Microbiology,
Cook College, Rutgers University, New Brunswick, New Jersey 08901
Received 11 May 1998/Accepted 10 September 1998
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ABSTRACT |
Two thermostable endocellulases, CelA and CelB, were purified from
Thermotoga neapolitana. CelA (molecular mass, 29 kDa; pI 4.6) is optimally active at pH 6.0 at 95°C, while CelB (molecular mass, 30 kDa; pI 4.1) has a broader optimal pH range (pH 6.0 to 6.6) at
106°C. Both enzymes are characterized by a high level of activity
(high Vmax value and low apparent
Km value) with carboxymethyl cellulose; the
specific activities of CelA and CelB are 1,219 and 1,536 U/mg,
respectively. With p-nitrophenyl cellobioside the
Vmax values of CelA and CelB are 69.2 and 18.4 U/mg, respectively, while the Km values are
0.97 and 0.3 mM, respectively. The major end products of cellulose
hydrolysis, glucose and cellobiose, competitively inhibit CelA, and
CelB. The Ki values for CelA are 0.44 M for
glucose and 2.5 mM for cellobiose; the Ki
values for CelB are 0.2 M for glucose and 1.16 mM for cellobiose. CelB
preferentially cleaves larger cellooligomers, producing cellobiose as
the end product; it also exhibits significant transglycosylation
activity. This enzyme is highly thermostable and has half-lives of 130 min at 106°C and 26 min at 110°C. A single clone encoding the
celA and celB genes was identified by screening
a T. neapolitana genomic library in Escherichia
coli. The celA gene encodes a 257-amino-acid protein, while celB encodes a 274-amino-acid protein.
Both proteins belong to family 12 of the glycosyl hydrolases, and the
two proteins are 60% similar to each other. Northern blots of T. neapolitana mRNA revealed that celA and
celB are monocistronic messages, and both genes are
inducible by cellobiose and are repressed by glucose.
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INTRODUCTION |
Interest in transformation of
biomass is both fundamental and applied (9). Plant biomass
is mainly composed of cellulose, hemicellulose, and lignin. Cellulose,
which commonly accounts for up to 40% of plant biomass, is an
unbranched linear polymer of glucose molecules with
-1-4 linkages.
Naturally occurring cellulosic compounds are structurally heterogeneous
and have both amorphous and highly ordered crystalline regions.
The degree of crystallinity varies with the source of the
cellulose, and the more crystalline regions are resistant to
enzymatic hydrolysis. Enzymatic hydrolysis of cellulose requires a
consortium of enzymes, including endo-
-glucanases
(1,4-
-D-glucan 4-glucohydrolase [EC 3.2.1.4]),
exoglucanases (1,4-
-D-glucan cellobiohydrolase
[EC 3.2.1.91]), glucan glucohydrolases
(1,4-
-D-glucan glucohydrolase [EC 3.2.1.74]),
and
-glucosidases (
-D-glucoside glucohydrolase [EC 3.2.1.21]). Endoglucanases randomly hydrolyze internal glycosidic linkages, which results in a rapid decrease in polymer length and a
gradual increase in the reducing sugar concentration (4, 54). Exoglucanases hydrolyze cellulose chains by removing
cellobiose either from the reducing ends or the nonreducing ends
(46), which results in rapid release of reducing sugars but
little change in polymer length. Glucose is produced primarily by
the action of
-glucosidases on cellobiose and by the action of
glucan glucohydrolases on cellooligomers (16, 35).
Frequently, cellulolytic organisms also produce other polysaccharases,
including xylanases, mannanases, galactosidases, and
-1,3-1,4-glycanases, which hydrolyze associated plant
polysaccharides and thus facilitate cellulase access to the substrate.
There is considerable interest in thermozymes as biocatalysts (1,
50). The members of the genus Thermotoga are important sources of thermostable glycosyl hydrolases, including
cellulases, xylanases, xylosidases, amylases,
-glucosidases, mannanases, and galactosidases (7, 12, 13,
24, 43, 53). In this study, we purified and characterized two
cellulase components from a marine hyperthermophile, Thermotoga
neapolitana. We also characterized the genes encoding these
cellulases and studied the regulation of these genes.
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MATERIALS AND METHODS |
Bacterial strains and culture media.
T.
neapolitana NS-E (kindly provided by K. O. Stetter and R. Huber, University of Regensburg, Regensburg, Germany) was grown anaerobically at 77°C in MMS medium (22) containing
cellobiose (1%, wt/vol) or glucose (1%, wt/vol) as a carbon source in
a static culture for 24 h. Commercially available
Escherichia coli strains (see below) were grown in
Luria-Bertani medium supplemented with ampicillin (50 µg/ml).
Purification of endoglucanases.
T. neapolitana
was grown on cellobiose. The cells were washed twice in 0.1 M Tris-HCl
(pH 7.5), resuspended in the same buffer, and sonicated. The cell
debris was removed by centrifugation (16,000 × g, 40 min, 4°C). The proteins were precipitated with ammonium sulfate
(final concentration, 80%), collected by centrifugation (20,000 × g, 20 min, 4°C), and dissolved in 20 ml of 50 mM
Tris-HCl (pH 7.5). The ammonium sulfate precipitation procedure was
repeated twice, and the resulting cell extract was dissolved in 20 ml
of 20 mM piperazine-HCl buffer (pH 5.1) and desalted by ultrafiltration with a type PM 10 membrane (Amicon, Cambridge, Mass.). The pH of this
cell extract was adjusted to 4.3 by adding 0.15 M sodium citrate (pH
4.1); the precipitated proteins were removed by centrifugation. The pH
of the supernatant containing endoglucanase activity was adjusted to
5.1 with NaOH. The preparation was purified by anion-exchange chromatography by using an FFQ-Sepharose column (type XK26; bed volume,
60 ml; Pharmacia, Piscataway, N.J.) equilibrated with 20 mM
piperazine-HCl (pH 5.1). The enzymes were eluted with a shallow linear
gradient consisting of 0 to 0.3 M NaCl. Two peaks that exhibited
activity with carboxymethyl cellulose (CMC) (peaks P-I and P-II) were
pooled separately and desalted by ultrafiltration.
The proteins in peak P-I in 50 mM MOPS (morpholinepropanesulfonic acid)
buffer (pH 7.0) were subjected to gel filtration on a Bio-Gel P-60
column (1.5 by 97 cm). The pooled active fractions obtained after
buffer exchange were applied to a Mono-Q column (type HR 10/10;
Pharmacia) under the conditions described above for the FFQ-Sepharose
column. The final purification step was discontinuous preparative
polyacrylamide gel electrophoresis (PAGE) with a PrepCell (Bio-Rad,
Richmond, Calif.) performed as recommended by the manufacturer. Peak
P-II from the FFQ-Sepharose column was purified further by exploiting
the interaction of this peak with a Sephadex matrix. The proteins in
peak P-II in 50 mM MOPS buffer (pH 7.0) were applied to a Sephadex G-50
column (1.6 by 36 cm), and the retained protein was collected in 7 column volumes of buffer. The active fractions were pooled and concentrated.
Enzyme assays.
Polysaccharase activity was determined by
measuring the release of reducing sugars by the Somogyi-Nelson method
(54); standard curves were prepared under assay conditions
for glucose, cellobiose, or xylose. The polymeric substrates and assay
conditions were as follows: 0.7% CMC (type DS 0.7; Aqualon, Newark,
Del.), 20 min; 40 mg of filter paper (Whatman CC-41), 3 h; 10 mg
of amorphous cellulose (phosphoric acid swollen; Whatman CC-41), 2 h; and 1% oat spelt xylan (Sigma Chemical Co., St. Louis, Mo.), 20 min. The quantities of enzyme used in the assays ranged from 7 to 50 ng
per reaction mixture. Aryl glycosidase activity was determined by using
p-nitrophenyl (pNP) glycoconjugates at a final
concentration of 2 mM (54) in a 30-min assay. The
glycoconjugates used included pNP-
-D-arabinoside (pNPA),
pNP-
-D-cellobioside (pNPC),
pNP-
-D-glucoside (pNPG),
pNP-
-D-lactoside (pNPL),
pNP-N-acetyl-
-D-glucosaminide (pNPN), and pNP-
-D-xyloside
(pNPX). The amount of pNP liberated was measured
at 405 nm. The levels of spontaneous hydrolysis of pNP glycosides at
high temperatures were less than 1% at pH 6.0. The reaction blank
values for spontaneous hydrolysis were subtracted from experimental
values before the data were analyzed. One unit of enzyme activity
corresponded to the release of 1 µmol of pNP or reducing
sugar equivalent per min. For cellobiase, the derived reducing sugar
value was divided by two so that the result would be based on bond
cleavage and not on total sugar production. All assays were carried out
in 50 mM (final concentration) sodium phosphate-sodium citrate buffer
(pH 6.0) at 95°C unless indicated otherwise.
Analytical methods and enzymatic characterization.
The
molecular masses of the enzymes were determined by sodium dodecyl
sulfate (SDS)-PAGE as described by Laemmli (27). Samples were heated at 100°C for 20 min to completely denature them. To determine the N-terminal sequences, the bands were transferred to a
polyvinylidene difluoride membrane, and each sequence was determined
with an Applied Biosystems model 475A gas phase sequenator. Protein
concentrations were estimated by the dye binding method (Bio-Rad) by
using bovine serum albumin as the standard. Isoelectric focusing was
used to determine the pI (Phast System; Pharmacia). The pH optima of
the enzymes were determined by using 0.1 M phosphate-citrate (PC)
buffer (pH 3.6 to 7.0). To determine the optimum temperatures for
activity, mixtures of CMC and enzyme in 0.1 M PC buffer (pH 6.3) were
sealed in a 2-ml gas chromatography vials (Wheaton, Vineland, N.J.).
The vials were placed in a oil bath for 20 min at temperatures between
70 and 120°C. The reducing sugars released were quantified as
described above. The thermal stability of CelB was evaluated by heating
0.19-µg portions of the enzyme in sealed vials in a oil bath at 100 to 120°C for up to 4 h. The buffer used in the stability profile
study was 400 µl of 20 mM MOPS buffer (pH 7). After heating, the
vials were cooled on ice, and the residual CelB activity was estimated
by using CMC as the substrate in PC buffer (pH 6.0).
Hydrolysis of cellooligosaccharides and
transglycosylation were analyzed by using a
high-performance liquid chromatograph
(model LC600; Shimadzu, Kyoto,
Japan) linked to a refractometer
(Waters, Milford, Mass.) in
conjunction with a Hewlett-Packard
model 3390A integrating recorder.
The cellooligosaccharides used
included cellobiose, cellotriose,
cellotetrose, cellopentose,
and cellohexose (V-Labs, Covington, La.).
Purified CelB (0.14
µg) was mixed with cellobiose (5 mM), cellotriose
(5 mM), cellotetrose
(5 mM), cellopentose (2.2 mM), and cellohexose
(3.35 mM) in total
volumes of 150 µl, and the preparations were
incubated at 85°C
for up to 3 h. The products were analyzed by
withdrawing aliquots
after 5, 10, 60, and 180 min and injecting them
onto a SugarPak
1 column (Waters) at 95°C; the oligosaccharides were
eluted isocratically
with distilled water at a flow rate of 0.5 ml/min.
Screening T. neapolitana genomic DNA library for
glycosyl hydrolases.
All DNA manipulations were carried out by
using standard methods (38). T. neapolitana
genomic DNA was partially digested with MboI, and fragments
(lengths, 2.3 to 7.7 kb) were ligated into BamHI-cut pUC 119 and were transformed into E. coli DH5
cells. The
resulting library was screened in 96-well plates at 80°C by using 0.1 M PC buffer (pH 6.0) containing 1.8 mM (final concentration)
methylumbelliferyl-
-D-cellobioside (MUC) and 1.8 mM
(final concentration methylumbelliferyl-
-D-glucoside
(MUG). Positive clones were detected by fluorescence of the
methylumbelliferone released. The enzymatic activities of MUC- and
MUG-positive clones were analyzed by using aryl glycosides, CMC, and
xylan as described above.
Cloning, sequencing, and sequence analysis of endoglucanase genes
celB and celA.
Clone p17D1 containing a 6.2-kb
insert with a gene expressing greater carboxymethyl cellulase (CMCase)
activity than that of the other clones was selected for analysis.
Further subcloning and screening for CMCase activity resulted in the
isolation of clone p17K1 with a 4.0-kb KpnI fragment from
p17D1 (Fig. 1). Unidirectional nested
deletion clones were generated by using the Erase-A-Base system
(Promega, Madison, Wis.). Deletion derivatives that were 2.6 kb long
(p17K-D64) (Fig. 1) and smaller were sequenced by the Sanger dideoxy
chain termination method (39) by using an M13 reverse
sequencing primer. The sequence of the complementary strand was
determined by primer extension. The sequence was assembled and analyzed
by using the GCG software package (11) and BLAST (2). Analysis of the assembled DNA sequence revealed the
complete celB gene sequence and a partial sequence coding
for celA (the C terminus). The following two primers were
designed: EG-6 (5' GACGACCAACCTCATCCTTT 3'), which bound to
the 3' end of the celA gene based on the DNA sequence
derived from p17K-D64 (Fig. 1); and EG-9 (5'
ATGGTTGAACTGACCGCACCGGGCAC 3'), which was based on the N-terminal
sequence of the purified CelA protein. With these two primers, the
complete gene was amplified by PCR, cloned, and sequenced.

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FIG. 1.
Maps of clone p17D1 and the subclones used for
sequencing. The horizontal arrows indicate the direction of
transcription of celA and celB, and the bars
above the clone p17K1 map show the regions used as probes for Northern
blots.
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Analysis of expression of celA and celB
from T. neapolitana.
Expression of celA and
celB was analyzed with Northern blots by using total RNA
prepared from T. neapolitana. Total RNA was collected
from cells grown on cellobiose (5 and 10 µg) and from cells grown on
glucose (5 to 40 µg). The two pools of RNA were separated on
formaldehyde-agarose gels and blotted onto nylon membranes. A DNA probe
was prepared by PCR by using primers Tn536U (5'
CTGTGAGAAAGGGGAGGGTGAG 3') and Tn950L (5'
ATCCGCGTAGAACTGGACCTTT 3'), which produced a 412-bp amplicon that
spanned both genes (Fig. 1). A probe specific for celA (428 bp) was made by using primers Tn94U (5' ACGGGAACGGTGGTGATGAG 3')
and Tn502L (5' GCGTGCCAGAGTTCCCAGAT 3'). The probes
were prepared by random primer labeling by using [
-32P]dCTP. The Northern blots were prepared by
standard protocols (38).
Nucleotide sequence accession number.
The nucleotide
sequence of the celA and celB genes of
T. neapolitana has been deposited in the GenBank
database under accession no. U93354.
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RESULTS |
Purification of endoglucanases CelA and CelB.
Two
endoglucanases, CelA and CelB, were purified from crude extracts of
T. neapolitana (Table 1).
Treatment of cell extracts at a low pH (pH 4.3) was a rapid facile step
which removed approximately 26% of the protein yet retained 84.7% of
the activity. Further fractionation with an FFQ-Sepharose fast-flow
column resulted in two distinct peaks (peaks P-I and P-II) which
exhibited activity with CMC. Peak P-I eluted at 0.04 M NaCl and was
designated CelA, whereas peak P-II eluted at 0.18 M NaCl (data not
shown) and was designated CelB. After preparative PAGE the overall
level of recovery of purified CelA was 17.5%, and the specific
activity with CMC was 1,219 U/mg (Table 1). CelB was purified based on
its affinity to Sephadex G-50; it desorbed slowly by elution over 7 column volumes of buffer (data not shown). CelB was purified 406-fold, and the level of recovery after a second pass through the Sephadex column was 27.8%. Purified CelB had a specific activity of 1,536 U/mg
with CMC (Table 1). The overall level of recovery of CMCase activity
(CelA activity plus CelB activity) from the cell extracts was 45.3%.
Characterization of CelA and CelB.
CelB was active over a
broad pH range; the levels of activity at pH values between 5.2 and 7.0 were more than 80%, and optimal activity occurred at pH values between
6.0 and 6.6 (Table 2). CelA had a much
narrower pH range; optimal CelA activity occurred at pH 6.0. The
temperature optima for CelA and CelB in a 20-min assay were 95 and
110°C, respectively (Table 2). CelB exhibited high thermal stability,
and the half lives of CelB at 106 and 110°C were 130 and 26 min,
respectively. After preincubation at 100°C for 4 h, CelB
retained 73% of its activity (Table 2).
Isoelectric focusing resulted in single bands with pI values of 4.6 and
4.1 for CelA and CelB, respectively. The SDS-PAGE
analysis yielded a
single band at 29 kDa for CelA, whereas two
distinct bands at 29.3 and
30.2 kDa were obtained for CelB (Fig.
2).
N-terminal amino acid sequencing of these two bands was used
to
determine if they represented the same protein. The sequence
of the
upper band was EVVL
TDIGATDITFKG, and the sequence of
the
lower band was TDIGATDITFKG; the latter sequence is a part of
the N-terminal sequence of the upper band (underlined sequence).
In
addition, both bands exhibited activity with
methylumbelliferyl-

-D-cellobioside
(data not shown). These results
indicated that the two CelB bands
were probably derived from the same
protein; the lower band may
have been the result of proteolytic
processing and lacked four
amino acids at the N terminus. In contrast,
the N-terminal sequence
of CelA was distinct, MVELTAPGTADFRWN. All
three experimentally
determined N termini were consistent with the
deduced amino acid
sequences (Fig.
3).

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FIG. 2.
SDS-PAGE analysis of purified CelA and CelB from
T. neapolitana. Lane M, molecular weight markers; lane
1, crude extract (10 µg); lane 2, CelA (1.0 µg); lane 3, CelB (2.0 µg).
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FIG. 3.
Nucleotide sequence and deduced amino acid sequence of
the celA and celB genes. A putative ribosome
binding site is italicized; the start and stop codons are indicated by
boldface type; experimentally derived N-terminal sequences are
underlined; inverted repeats are indicated by arrows; the putative
signal peptide cleavage site is double underlined; and the conserved
aspartic acids and glutamic acids are indicated by triangles.
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The CMCase specific activities of CelA and CelB were dramatically
high (1,219 and 1,536 U/mg, respectively) compared with,
for instance,
specific activities of the endoglucanases of
Trichoderma reesei, which are approximately 50 U/mg (Table
2). However, both
CelA and CelB exhibited low activity with amorphous cellulose
(acid-swollen cellulose) or crystalline cellulose (filter paper).
Both
CelA and CelB exhibited low activity with
pNPG but moderate
activity with
pNPL (Table
2). The two enzymes had similar
apparent
Km values and high
Vmax values with CMC, but they differed in
activity with
pNPC; CelA had higher
Vmax and
Km values than
CelB
(Table
3). End product
inhibition was evaluated by monitoring
the release of the chromogen
pNP from
pNPC in the presence of
two products,
cellobiose and glucose.
pNPC was used as the substrate
in
these studies in place of CMC and other cellulosic substrates
because
the released chromogen could be readily quantified without
the
complication resulting from the added reducing power of inhibitors.
The
kinetics of inhibition for both glucose and cellobiose were
competitive. The
Ki values of glucose and
cellobiose for CelA
were 0.44 M and 2.5 mM, respectively, whereas the
Ki values of
glucose and cellobiose for CelB
were 0.2 M and 1.16 mM, respectively
(Table
3). Neither CelA nor CelB
exhibited any activity with
cellobiose. CelB exhibited slight activity
with cellotriose. The
specific activity of CelB with cellotetrose was
2.2-fold greater
than the specific activity of CelB with cellotriose
(Table
2).
Hydrolysis of cellooligosaccharides.
Analysis of the
hydrolysis products of cellooligosaccharides clearly showed that CelB
preferentially hydrolyzed oligomers with higher degrees of
polymerization and that the length of cellotriose was the minimum
length for hydrolysis (Table 4).
Cellotriose and cellotetrose were initially hydrolyzed to cellobiose
and cellotriose, with concomitant formation of the larger
cellooligomers cellotetrose, cellopentose, and cellohexose. There
was no evidence that glucose was formed in the early stages of
hydrolysis. The larger transglycosylation products
were subsequently degraded, predominantly to cellobiose. With
cellopentose and cellohexose, there was the potential for production of
transglycosylation products with higher degrees of
polymerization; if such larger oligosaccharides (oligosaccharides larger than cellohexose) were produced, they may not have been detected
because of their low solubilities. CelB exhibited specific activities
of 264 and 601 U/mg with cellotriose and cellotretrose, respectively
(Table 2). Small quantities of glucose were produced after
extended periods of incubation, which may have been a result of the
transglycosylation activity of the enzyme. The
major end product was cellobiose (Table 4).
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TABLE 4.
High-performance liquid chromatography analysis of
products of hydrolysis of cellooligosaccharides by CelB
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Screening T. neapolitana genomic library for aryl
glycosidases.
Using fluorescent glycosides as substrates, we
isolated 12 MUC- and MUG-positive clones. Restriction analysis was used
to map these 12 clones, 8 of which produced distinct restriction patterns (data not shown). The enzyme activities of these eight clones
were determined by using a range of substrates (Table
5). One clone (p17D1) exhibited high
CMCase activity, and one (p18C9) exhibited low CMCase activity
(Table 5). Clone p22C6 exhibited predominantly aryl-
-glycosidase
activity, while clones p46B1 and p54B2 exhibited high activity with
xylan. One clone (p28F2) had a broad spectrum of activity which
included activity with pNPA, pNPG, and
pNPX. In addition, clone 74C11 exhibited activity with
pNP-N-acetylglucosamine (Table 5). Clone
p17D1 was the clone that exhibited the highest level of CMCase
activity and was chosen for further analysis.
Sequencing and sequence analysis of celA and
celB.
Subclones and deletion derivatives of p17D1 were
sequenced, and an analysis revealed the presence of one complete open
reading frame (ORF) and one partial ORF (Fig. 1). The complete ORF was designated celB after the translated sequence was compared
to the N-terminal sequence of purified CelB from T. neapolitana. The celB gene codes for a 274-amino-acid
protein with an estimated molecular mass of 31 kDa, which is in
agreement with experimentally derived data (Table 2). The N terminus of
CelB has the following similarities to the classical gram-negative
secretory signal peptide sequence (34): a positively charged
amino acid at the N terminus, followed by a stretch of 14 hydrophobic
amino acids (Fig. 3). A potential signal peptide cleavage site
(15-Leu-Phe-Ser-17) immediately follows the hydrophobic region (Fig.
3). As this sequence is identical to the N-terminal sequence of
purified CelB from T. neapolitana (Fig. 1), it supports
the likelihood that the peptide bond between amino acids 17 (Ser) and
18 (Ala) (Fig. 3) is hydrolyzed.
The partial ORF was designated
celA, and the complete gene
was cloned as described above. The
celA gene codes for a
257-amino-acid
protein, and this protein lacks a characteristic
secretory signal
peptide sequence. The stop codon of
celA
overlaps the start codon
of
celB (nucleotides 771 to 774 [ATGA] [Fig.
3]), suggesting that
translational coupling plays a
role in the expression of the two
genes and the production of a
polycistronic message. A comparison
of the sequences of CelA and CelB
to sequences from the GenBank
database revealed that CelA and CelB
belong to family 12 of glycosyl
hydrolases (Table
6) (
21). The amino acid
sequences of CelA
and CelB from
T. neapolitana are very
similar to the amino acid
sequences of CelI and CelII from
Thermotoga maritima (levels of
similarity, 86 and 94%,
respectively). In addition,
T. neapolitana CelA and
CelB are homologous to each other (level of similarity,
69%). This
suggests that there are paralogous genes which may
have been created by
a gene duplication event.
T. neapolitana CelA and CelB
also exhibit significant similarities to endoglucanase
CelA from the
thermophile
Rhodothermus marinus (accession no.
U72637) (
19) and a cellulase (CelS) from
Erwinia
carotovora (
37) (Table
6).
Analysis of expression of celA and
celB.
An analysis of mRNA specific to celA
and celB was conducted to determine the sizes of the
transcripts and the regulation of the genes. While the DNA sequence
suggested that the two genes could potentially be expressed as a
polycistronic message, surprisingly, celA and
celB are independently expressed as individual transcripts (Fig. 4). The celA transcript
is 1.1 kb long, and the celB-specific mRNA is 0.9 kb long
(Fig. 4); no larger bands were detected which would have been
indicative of a polycistronic message. mRNAs specific for
celA and celB were present in cells grown on
cellobiose, indicating that cellobiose acted as an inducer. In
contrast, glucose acted as a repressor, completely shutting off the
synthesis of celA and celB mRNAs (Fig. 4). Up to
40 µg of total RNA from glucose-grown cells was tested for the
presence of celA- or celB-specific transcripts; none were detected.

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FIG. 4.
Northern blot analysis of RNA. (A) Regulation of
celA and celB genes (with a probe specific for
both celA and celB). Lanes 1 and 2, total RNA
from T. neapolitana grown on cellobiose (5 and 10 µg,
respectively); lanes 3 through 6, total RNA from T. neapolitana grown on glucose (5, 10, 20, and 40 µg,
respectively). (B) Northern blot with celA gene-specific
probe. Lane 1 contained 10 µg of RNA from T. neapolitana grown on cellobiose.
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DISCUSSION |
Members of the Thermotogales, including
Thermotoga elfii, T. maritima, T. neapolitana, T. thermarum, and Thermotoga
sp. strain FjSS3-B.1, have been isolated from various geothermally
heated areas. Each species produces a number of thermostable
polysaccharases, including cellulases, xylanases, mannanases, and
galactosidases (43). In this paper we describe purification
and enzymatic characterization of two cellulases, CelA and CelB, and
cloning of the cognate genes from T. neapolitana.
In the protocol used for purification of CelB we utilized a practical
treatment to precipitate extraneous proteins at a low pH and also used
specific interaction with Sephadex G-50 (Table 1). Interactions between
cellulolytic enzymes and polysaccharide-based matrices are well
known and have been exploited in the purification of these enzymes
(7, 33, 36). Interestingly, the analysis of the CelB
sequence revealed the lack of a known cellulose binding domain, and
thus the interaction of CelB with the Sephadex matrix may have involved
the catalytic domain of CelB. As Coutinho et al. (10) note,
random cross-linking of dextran may result in a surface morphology that
mimics that of regenerated cellulose and permits attachment of the
catalytic domain; however, the exact mechanism of this interaction
remains unclear and merits further study, especially in relation to its applications.
Transglycosylation, a property of some cellulases that has been
widely reported (5, 14, 16-18, 25, 51), is exhibited by
enzymes that specifically retain a substrate's anomeric carbon atom
configuration during hydrolysis (41). As purified CelB exhibits transglycosylation activity, it is likely
that it retains the anomeric carbon atom configuration of its
substrate(s). Retention or inversion of configuration is a key
parameter in traditional carbohydrase classification (41)
and appears to be applicable to recent sequence-based classifications
as there have been no reports yet of enzymes belonging to the same
family (as determined by sequence-based classification) exhibiting
different substrate stereochemistries (52).
Sequence-based classification of catalytic domains has led to the
creation of more than 50 families of glycosyl hydrolases
(21). T. neapolitana CelA and CelB belong to
family 12.
Bronnenmeier et al. (7) described purification of two
cellulases, CelI and CelII, from T. maritima.
Subsequently, two cellulase genes, celA and celB,
were cloned and sequenced from the same organism (28). On
the basis of a comparison of the N-terminal sequence of CelI and the
deduced amino acid sequence encoded by the celA gene, it was
clear that CelI and CelA were synonomous, and the designation CelA was
accepted (28). The relationship between the T. maritima enzyme CelII and the celB gene, however, remains to be clarified (28). Based on sequence comparison
and enzymatic characterization results, the T. neapolitana cellulases, CelA and CelB, appear to be analogous to
CelA (CelI) and CelB (CelII) of T. maritima
(7, 28). The nucleic acid sequence of T. neapolitana celA is 90% identical to that of T. maritima celA. Based on our characterization of T. neapolitana CelA (Table 2) and the homology of T. neapolitana CelA to CelA (CelI) of T. maritima
(28), we concluded that T. neapolitana CelA
is also an endo-acting enzyme. In addition, based on (i) T. neapolitana CelB's high level of activity with CMC and (ii) the
production of both cellobiose and cellotriose as major products of
hydrolysis of cellohexose (Table 4), we concluded that T. neapolitana CelB is an endo-acting enzyme. T. neapolitana CelB has a high level of activity with CMC, and its
level of activity is similar to that of T. neapolitana
CelA (Tables 2 and 3).
The cellulase systems of the various Thermotoga species
require further discussion. Bronnenmeier et al. (7)
concluded that CelB (CelII) was an exo-acting enzyme, based on the low
level of hydrolysis of Avicel to cellobiose and glucose after extended incubation (72 h at 80°C). Similar evidence has been reported for a
cellobiohydrolase (CbhI) from Thermotoga sp. strain
FjSS3-B.1 (36). Both Bronnenmeier et al. (7) and
Ruttersmith and Daniel (36) also reported, however, that
CelB and CbhI exhibited significantly higher activity with CMC.
Conventionally, hydrolysis of CMC has been used as an indicator of
endoglucanase activity (45), while true exoglucanases
exhibit very low levels of terminal activity with CMC. In our view, the
evidence may not be adequate to definitively identify these enzymes as
exoglucanases or cellobiohydrolases. More work is needed to determine
whether these enzymes have a true exo mode of action, an endo mode of
action, or both. Given this evidence, and as enzymes with both endo-
and exocellulase activities have been reported (3, 20, 23, 32,
47), it is interesting to consider whether traditional cellulase
classification systems (classification into only endo- or exo-acting
enzymes) are applicable to all cellulolytic systems (46,
48). It may be that a continuum of activities has evolved to
break down recalcitrant substrates, such as cellulose, and that some of
the enzymes exhibit both endo and exo modes of action (46).
T. neapolitana produces a consortium of enzymes
involved in cellulose hydrolysis, including two endoglucanases (CelA
and CelB), a
-glucosidase, and a
-glucan glucohydrolase
(44). A search for a true exoglucanase (cellobiohydrolase) in T. neapolitana is continuing.
The structural organization of celA and celB in
T. neapolitana suggests that these genes may be
expressed as a polycistronic mRNA. Such a pattern of expression has
also been suggested for celI and celII of
T. maritima (28). In addition, the DNA
sequence between the celA gene and the celB gene
indicates that translational coupling may play a role.
Translational coupling is a mechanism that ensures equimolar
translation of a polycistronic mRNA (15). It requires
that a translational termination codon be followed by, or
overlapped by, a initiation codon, a ribosome binding site, or both
within about 10 nucleotides of the termination codon (15). The sequence between celA and celB shows just
such an arrangement (Fig. 3). Surprisingly, analysis of mRNA
from T. neapolitana grown on cellobiose has indicated
that celA and celB are not polycistronic but
rather are expressed as monocistronic mRNAs. Our experiments, however, do not rule out the possibility that induction occurs under
alternate conditions (polycistronic message and expression via
translational coupling).
With regard to regulation, cellobiose induces cellulase production in
Trichoderma reesei (40) and in
Thermomonospora fusca (29). However, analysis of
the induction process is complex. Cellobiose can either be hydrolyzed
prior to uptake or be taken up directly. Hydrolysis to glucose can
cause catabolite repression. Sophorose (a disaccharide of
-1,2-linked glucose) is a potent inducer of cellulases in certain
microbes (8), and production of sophorose by
transglycosylation by a
-glucosidase and a
cellulase has been demonstrated (8, 30). Our results show
that the T. neapolitana celA and celB genes
are induced by cellobiose as CelA and CelB are produced during growth
on cellobiose (Table 1), as determined by Northern blotting (Fig. 4).
However, an alternative inducer molecule could also be produced
from cellobiose by the transglycosylating activity of CelB.
In addition, glucose has been widely reported to represses
biosynthesis of various glycosidases (6, 26), including
cellulases, cellobiohydrolases,
-glucosidases, and xylanases, in
both bacteria and fungi. In T. neapolitana, expression
of both the celA gene and the celB gene is
repressed by glucose. Such catabolite repression is often mediated by
intracellular cAMP levels (31). In T. neapolitana (a gram-negative bacterium), there is a
cAMP-independent mechanism of catabolite (glucose) repression of
-galactosidase biosynthesis (49). As
Thermotoga spp. are on one of the deepest phylogenetic branches in the bacterial domain (42), it will be
interesting to determine (i) how the various polysaccharase genes are
regulated, (ii) the role (if any) of cAMP in catabolite repression, and
(iii) the mechanism of cAMP-independent catabolite
repression. Workers in our laboratory are also investigating
the regulation of various polysaccharase genes in T. neapolitana by performing reverse transcriptase PCR analyses of
these genes.
Thermostable cellulases active against crystalline cellulose are of
great biotechnological interest. However, the ability of a
cellulolytic system to hydrolyze highly crystalline regions of
cellulose should be considered from the perspective of an
organism's ecological niche. Members of the
Thermotogales have been isolated from geothermally heated
environments, including marine hot water seeps, deep-sea thermal
vents, continental solfataric springs, and oil-producing wells. In such
ecological niches it is unclear how crystalline cellulosic compounds
would support the growth of these microorganisms, for in marine systems
such compounds are minor polymers. Perhaps, "mixed-type" glucans
derived from the primary producers may provide the substrates necessary
for growth of these fermentative members of the
Thermotogales. Indeed, T. maritima can grow
on heat-sterilized bacterial cells (22). The alternate
classical view that a discrete cellulase system evolved eons ago or was
acquired through horizontal gene transfer is quite plausible. This is
an interesting speculation. However, the biotechnological applications
of the highly thermostable cellulases and their further development via
protein engineering as protein scaffolds on which novel functions can
be engineered illustrate the dynamic potential of these enzymes.
 |
ACKNOWLEDGMENTS |
This work was supported by grants from the National Renewable
Energy Laboratory, Golden, Colo., and the U. S. Department of Energy, Washington, D.C.
We thank James K. McCarthy for his comments and critical reading of the manuscript.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Biochemistry and Microbiology, Cook College, Rutgers University, 76 Lipman Drive, New Brunswick, NJ 08901-8525. Phone: (732) 932-9763, ext. 328. Fax: (732) 932-8965. E-mail:
Eveleigh{at}aesop.rutgers.edu.
Paper no. D-01111-01-98 of the New Jersey Agricultural Experiment Station.
Present address: Department of Animal Science & Technology,
College of Agriculture & Life Sciences, Seoul National University, Suweon 441-744, and Animal Resources Research Center, Kon-Kuk University, Seoul 133-701, Korea.
 |
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