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Appl Environ Microbiol, February 1998, p. 431-438, Vol. 64, No. 2
0099-2240/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Significance of Viral Lysis and Flagellate Grazing as Factors
Controlling Bacterioplankton Production in a Eutrophic
Lake
Markus G.
Weinbauer* and
Manfred G.
Höfle
GBF
National Research Center of
Biotechnology, AG Molecular Microbial Ecology, D-38124
Braunschweig, Germany
Received 19 August 1997/Accepted 14 November 1997
 |
ABSTRACT |
The effects of viral lysis and heterotrophic nanoflagellate (HNF)
grazing on bacterial mortality were estimated in a eutrophic lake (Lake Plußsee in northern Germany) which was separated by a steep
temperature and oxygen gradient into a warm and oxic epilimnion and a
cold and anoxic hypolimnion. Two transmission electron
microscopy-based methods (whole-cell examination and thin sections)
were used to determine the frequency of visibly infected cells,
and a model was used to estimate bacterial mortality due to viral
lysis. Examination of thin sections also showed that between 20.2 and
29.2% (average, 26.1%) of the bacterial cells were empty (ghosts) and
thus could not contribute to viral production. The most important
finding was that the mechanism for regulating bacterial production
shifted with depth from grazing control in the epilimnion to control
due to viral lysis in the hypolimnion. We estimated that in the
epilimnion viral lysis accounted on average for 8.4 to 41.8% of the
summed mortality (calculated by determining the sum of the mortalities due to lysis and grazing), compared to 51.3 to 91.0% of the summed mortality in the metalimninon and 88.5 to 94.2% of the summed mortality in the hypolimnion. Estimates of summed mortality values indicated that bacterial production was controlled completely or almost
completely in the epilimnion (summed mortality, 66.6 to 128.5%) and
the hypolimnion (summed mortality, 43.4 to 103.3%), whereas in the
metalimnion viral lysis and HNF grazing were not sufficient to control
bacterial production (summed mortality, 22.4 to 56.7%). The
estimated contribution of organic matter released by viral lysis
of cells into the pool of dissolved organic matter (DOM) was low;
however, since cell lysis products are very likely labile compared to
the bulk DOM, they might stimulate bacterial production. The high
mortality of bacterioplankton due to viral lysis in anoxic water
indicates that a significant portion of bacterial production in the
metalimnion and hypolimnion is cycled in the bacterium-virus-DOM loop.
This finding has major implications for the fate and cycling of organic
nutrients in lakes.
 |
INTRODUCTION |
In a seminal paper, Pomeroy
(47) showed that bacteria play a major role in the cycling
of energy and matter in aquatic systems. The development of techniques
which allowed quantification of bacterial abundance (31) and
production (21) was a milestone in the investigation of the
ecology of bacterioplankton. Later, Azam et al. (2)
developed the concept of the "microbial loop," in which bacteria
recycle organic matter which otherwise would be lost from the food web.
These findings have stimulated a large amount of research on the
mechanisms which regulate bacterial biomass and processes in aquatic
systems.
There is an ongoing debate about whether bacterial production and
biomass are regulated by available resources (bottom-up control) or by
predators (top-down control). On the basis of a cross-system survey,
Billen et al. (8) argued that bacteria are controlled by
resources. Similar conclusions were drawn from other cross-system
investigations (9, 14), and Pace and Cole (44)
found no evidence in experimental studies that protozoa effectively
regulate bacterial abundance. Other workers have argued that bacterial
mortality is largely due to protist grazing (19, 54), and
after reviews of the literature, Sanders et al. (51) and
Berninger et al. (6) described a strong relationship between bacterial abundance and heterotrophic nanoflagellate (HNF) abundance and suggested that significant predatory control of bacteria occurs. However, it has also been shown that bacteria and HNFs are not strongly
coupled across systems, and, consequently, HNFs do not always
control bacterial abundance (25), probably because of predatory control of HNFs by larger zooplankton (e.g., daphnids) (24). Ducklow and Carlson (18) have argued that
the control mechanisms may change seasonally. The finding that the
range of estimated clearance of bacteria in the water column due to HNF grazing is large, 5 to 250% per day (1), further supports
the notion that the effect of grazing on the control of
bacterioplankton changes with time and space. Thus, the key problem
might be determining where and when protist grazing is important for
regulating bacterioplankton.
In the late 1980s it was shown that in marine and limnetic systems
viral particles occur in great numbers which usually exceed even the
bacterial numbers (5, 48, 59). It was concluded that the
majority of viruses are bacterial viruses (bacteriophages) and that
viral lysis is a major cause of bacterial mortality. On average, ca. 10 to 20% of the bacterial production is lysed daily by viruses
(58). Thus, viral lysis is an additional mechanism which may
contribute to the regulation of bacterial production and processes. As
viruses cause mortality of bacteria, they are responsible in part for
the top-down type of control, as are the protists. The effect
of viral lysis on bacterial mortality has been compared with the effect
of flagellate grazing in various oceanic systems (22, 28, 55,
66), and the results have shown that the proportion of bacterial
production that is removed by viral lysis can be as high as the
proportion that is removed by grazing. A major consequence of
these findings is that a significant fraction of bacterial carbon
is probably not transferred to higher trophic levels, but is cycled in
a bacterium-virus-dissolved organic matter (DOM) loop. Thus, this
"viral loop" (11) might be a mechanism for controlling
bacterial production.
Some information concerning the spatiotemporal distribution of viruses,
the mechanisms controlling viral abundance and infectivity, and the
role of viral lysis in regulating bacterial production in oceanic
systems has been accumulated (12, 20, 23, 58, 61), whereas
there have been only a few reports on limnetic systems (30,
37-39). The only two reports which have estimated the
contribution of viral lysis to bacterial mortality in freshwater systems indicate that viral lysis can occasionally be an important factor in the control of bacterial production (30, 39). Our knowledge concerning the significance of viral lysis for bacterial production in oxic waters of limnetic systems is still sparse, and
there is no information concerning the significance of viral lysis for
bacterial production in anoxic waters. Since grazing rates are
typically low in anoxic waters, other mechanisms, such as viral lysis,
must be responsible for bacterial mortality. Thus, we quantified the
roles of viral lysis and flagellate grazing in the control of bacterial
production in the oxic and anoxic water layers of a stratified lake.
Our data indicate that the rates of removal of bacterial production by
flagellate grazing decreased with depth (i.e., with decreasing oxygen
concentration), whereas viral lysis was predominant in anoxic waters.
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MATERIALS AND METHODS |
Sampling and study site.
The study site was Lake Plußsee
(10°23'E, 54°10'N) near Plön in Schleswig-Holstein in
northern Germany. Protection against wind exposure, a lack of
discharging rivers or creeks, and a comparatively small size result in
stratification of the lake which is extremely stable and lasts from
spring to fall (35). On 23 September 1996 water samples were
collected along a depth profile with a Ruttner sampler from a permanent
platform located in the center of the lake. Subsamples were preserved
in formaldehyde (final concentration, 2%) and kept at 4°C in the
dark. Oxygen and temperature profiles were determined with a
microprocessor oximeter (model OX 196; Wissenschaftlich-Technische
Werkstätten, Weilheim, Germany) equipped with a model 2BK 90190 oxygen detector and a thermometer.
Microbial cell counts and chlorophyll a
concentrations.
Bacteria and viruses were stained with
4',6-diamidino-2-phenylindole (DAPI) (final concentration, 1 µg
ml
1) and were enumerated by epifluorescence microscopy by
using slight modifications of the protocols described by Turley
(62) and Suttle (57). Samples (1 ml) examined for
bacteria and viruses were stained without DNase treatment for 30 min,
filtered onto 0.02-µm-pore-size Anodisc filters (Whatman), and
enumerated by epifluorescence microscopy (Axiovert model 135TV
microscope; Zeiss) as described by Weinbauer and Suttle
(67). Samples (5 ml) examined for HNFs were stained with
DAPI, filtered onto 0.2-µm-pore-size black polycarbonate filters
(Nuclepore), and enumerated by epifluorescence microscopy as described
by Sherr et al. (53). For two samples of every depth layer,
bacterial counts obtained by using DAPI staining and epifluorescence
microscopy were compared with bacterial counts obtained by transmission
electron microscopy (TEM) (see below), and the values obtained by the
two methods did not differ significantly (data not shown). Chlorophyll
a concentrations were determined spectrophotometrically as
described by Parsons et al. (45).
Bacterial production.
Bacterial production was estimated by
the [3H]thymidine (83.0 Ci mmol
1; Amersham)
incorporation method (21). Samples from various depths were
placed in 100-ml acid-cleaned conical shoulder reagent bottles and
spiked with [3H]thymidine at a final concentration of 20 nM. The rate of incorporation of [3H]thymidine into the
trichloracetic acid-insoluble macromolecular fraction is constant for
bacterioplankton in Lake Plußsee at concentrations of
15 nM
(13). The flasks were mounted on iron racks, protected from
sunlight by polyvinyl chloride tubes, and deployed from a fixed
platform to the depths from which the samples were collected previously. The samples were deployed for ca. 2 h, and the
incorporation of label was stopped with formaldehyde (final
concentration, 2%). Samples were deployed in duplicate, and duplicate
formaldehyde-killed samples were used as controls. Five-milliliter
subsamples were filtered onto cellulose nitrate filters (pore size,
0.22 µm; type GSWP; Millipore), and the [3H]thymidine
was extracted by two 10-min incubations with 5% ice-cold trichloroacetic acid (Sigma Chemical Co.). The filters were dissolved with a scintillation cocktail, and radioactivity was determined with a
model 8500 Packard Tri-Carb scintillation counter. Conversion factors
for relating thymidine incorporation to cell production were obtained
from values determined in the fall during a seasonal study performed in
Lake Plußsee, and these conversion factors were 1.92 × 106 cells pmol
1 for the euphotic zone and
1.57 × 106 cells pmol
1 for deeper water
(13).
Determination of visibly infected bacteria, viral burst size, and
cell integrity.
A TEM-based method was used to determine the
number of visibly infected cells (64). In the modified
method used, samples were not incubated with streptomycin, and a lower
centrifugation speed and less time were used. Bacteria from 10-ml
samples were collected quantitatively onto Formvar-coated, 400-mesh
electron microscope grids by centrifugation at 66,000 × g for 20 min in a swinging-bucket rotor (Beckmann type
SW-41), stained for 30 s with 1% uranyl acetate, and rinsed three
times with deionized distilled water. The time and speed of
centrifugation used reduced the disruption of infected bacteria, and,
as few viruses were pelleted, phage in bacteria were easily
distinguished. Grids were examined for visibly infected cells by using
a TEM (model CEM 902; Zeiss) operating at an accelerating voltage of 80 kV. Between 200 and 2,000 cells per sample were examined for mature
phages inside the cells in order to obtain at least 10 visibly infected cells, and a minimum of five phage were observed in each visibly infected cell. Viruses inside cells were identified based on structure, size, intensity of staining, and uniformity of structure, size, and
staining intensity. The viral burst size (i.e., the number of viruses
produced in a cell) was estimated from all of the visibly infected
cells in a sample as described previously (64). Total bacterial abundance values were also obtained from the TEM grids (67).
To estimate the frequency of visibly infected cells (FVIC) and the cell
integrity from thin sections, glutaraldehyde (final concentration,
2%)-preserved bacterioplankton from ca. 1 liter were collected on a
0.2-µm-pore-size polycarbonate filter (Nuclepore) by using the
protocol of Hennes and Simon (30). The bacteria were
immobilized in 2% agar, postfixed with 1% osmium tetroxide, dehydrated with acetone, and embedded in standard Spurr medium. Ultrathin sections were stained with uranyl acetate and lead citrate. The visibly infected cells in the thin sections were identified as
described by Proctor et al. (50), and a minimum of three phage were observed in each cell. The integrity of cells was determined from thin sections by using the conservative criteria described by
Heissenberger et al. (29). Only those cells which were
completely empty or contained only amorphous cytoplasma structures in
combination with a detached inner membrane were considered dead
(ghosts).
Flagellate grazing.
Grazing rates were estimated as
described by Steward et al. (55) as the product of the
bacterial abundance and the HNF abundance determined along the depth
profile and clearance rates obtained from previously published papers.
The average clearance rates (± standard error) of HNFs in Lake
Plußsee during the entire stratification period were 0.60 ± 0.38 nl cell
1 h
1 in the epilimnion, 0.60 ± 0.40 nl cell
1 h
1 in the metalimnion, and
0.27 ± 0.13 nl cell
1 h
1 in the
hypolimnion (calculated from the data in reference
40).
Bacterial mortality and viral production.
A model was used
to estimate bacterial mortality due to viral lysis (50).
This model assumed that the proportion of bacterial mortality due to
viral lysis was about equal to the FVIC multiplied by conversion
factors (average, 10.84; range, 7.4 to 14.28). Bacterial mortality due
to flagellate grazing was calculated by dividing the grazing rate by
the bacterial production rate. Summed bacterial mortality was
calculated by determining the sum of mortality due to grazing and
mortality due to viral lysis. In a steady-state system bacterial
mortality due to viral lysis matches the bacterial production which is
removed by lysis (58). Thus, multiplying the lysed bacterial
production by the burst size yielded viral production. The
concentration of carbon released by viral lysis of bacteria was
calculated from the viral lysis rate of bacteria, the cell volumes
determined in Lake Plußsee along the depth profile on 23 September
1996 (63), and a conversion factor of 350 fg of C
µm
3 (36) for relating the bacterial
biovolume to the carbon content. The release of nitrogen and phosphorus
was estimated by using an N/C ratio of 0.26 (10) and a P/C
ratio of 0.04 (15). We further assumed that all biomass was
released as dissolved compounds.
Contact rates.
The rate of contact (R) between
viruses and bacteria was calculated by using the following formulae
(43): R = (Sh2
wDv)VP, where Sh is
the Sherwood number (1.06 for a bacterial community with 10% motile
cells [68]), w is the cell diameter
(calculated from the mean bacterial cell volume determined at each
depth [63], assuming that the cells are spheres),
V and P are the abundance of viruses and the
abundance of undamaged cells, respectively, and
Dv is the diffusivity of viruses, and
Dv = kT/3
µdv, where k is the Boltzmann constant (1.38 × 10
23
J K
1), T is the in situ temperature (in
degrees Kelvin), µ is the viscosity of water (in pascals per second; µ was calculated from values given by Schwörbel
[52] for temperatures in the range from 4 to 15°C),
and dv is the diameter of the viral capsid (73 nm in Lake Plußsee [16]). The contact rate was
corrected for bacterial abundance to estimate the number of contacts
per cell on a daily basis.
Carbon, phosphorus, and nitrogen concentrations.
On 23 September 1996, soluble reactive phosphorus (SRP), NO3, and
NH4 concentrations were determined along the depth profile by routine limnological methods (27) and were provided by
the Max Planck Institute for Limnology, Plön, Germany. Dissolved organic carbon (DOC) concentrations were determined from water samples
passed through 0.2-µm-pore-size polycarbonate filters (Nuclepore)
that were rinsed with Milli Q water. DOC concentrations were measured
by the high-temperature combustion method (56) by using a
Shimadzu model TOC-5000 analyzer with a platinum catalyst on quartz and
performing regular blank monitoring (4). The contamination
of samples by leaching of carbon from the polycarbonate filters was
less than 5% of the DOC concentration (data not shown).
Statistical analyses.
All data were log transformed for
statistical analyses. Analysis of variance and Fisher PLSD post hoc
tests (StatView D-4.5 program) were used to determine whether
parameters differed significantly between depth layers. A probability
of <0.05 was considered significant.
 |
RESULTS |
Characterization of study site.
Temperature and oxygen
profiles showed that the pelagic zone of Lake Plußsee was stratified
and separated into three distinct layers, the oxic epilimnion, the
thermocline layer (metalimnion), and the anoxic hypolimnion (Fig.
1). As determined by an analysis of
variance, the SRP and NH4 concentrations increased
significantly with depth, whereas the DOC and NO3
concentrations decreased significantly with depth. The DOC
concentrations ranged from 9.2 to 14.5 mg liter
1.

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FIG. 1.
Depth profiles for temperature and oxygen, DOC, and
inorganic nitrogen and phosphorus (SRP) concentrations in Lake Plußsee
on 23 September 1996.
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Bacterial production and abundance of microorganisms.
All
microbial parameters differed along the depth profile (Fig.
2). Bacterial production was
significantly higher in the metalimnion than in the other layers, which
is consistent with the high bacterial numbers in this layer. Also, the
viral abundance values and chlorophyll a concentrations were
significantly higher in the metalimnion than in the epilimnion and the
hypolimnion, whereas the HNF abundance values decreased significantly
with depth. For one depth of every depth layer thin sections and TEM
were used to check for cell integrity. We found that between 70.8 and
79.1% (average, 73.9%) of the cells were intact (Table
1).

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FIG. 2.
Depth profiles for microbial parameters in Lake Plußsee
on 23 September 1996. Chl a, chlorophyll a.
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Visibly infected bacteria.
For one depth of every depth layer
we determined the FVIC by two methods, whole-cell examination and
thin-section examination (Table 1). The FVIC obtained in the whole-cell
examination were between 74.8 and 85.0% (average, 78.7%) of the FVIC
obtained in the thin-section examination. In all samples we observed
bacterial cells which were visibly infected with viruses. When
corrected for the average percentage of nonintact cells, the FVIC
ranged from 0.7 to 9.0% of the total bacterial numbers, and the FVIC increased significantly with depth (Fig. 2), averaging 1.6% in the
epilimnion, 3.0% in the metalimnion, and 6.3% in the hypolimnion.
Bacterial mortality and viral production.
The bacterial
mortality due to viral lysis and flagellate grazing was estimated along
the depth profile in Lake Plußsee (Fig. 3) and was expressed as a ratio of the
rate of removal (by lysis or grazing) to the bacterial production rate.
We estimated that viral lysis removed on average 7.7 to 27.8% of the
bacterial production in the epilimnion, 19.6 to 46.8% of the bacterial
production in the metalimnion, and 38.4 to 97.3% of the bacterial
production in the hypolimnion. Bacterial mortality due to flagellate
grazing showed a trend opposite that found for viral lysis. While
flagellate grazing removed on average 81.8 to 108.0% of the bacterial
production in the epilimnion, the levels of mortality due to grazing
were 2.9 to 27.6% in the metalimnion and 5.0 to 8.9% in the
hypolimnion. In the epilimnion the summed mortality (calculated by
determining the sum of the average mortality due to viral lysis and the
average mortality due to grazing) was 66.6 to 128.5%, compared to 22.4 to 56.7% in the metalimnion and 43.4 to 103.3% in the hypolimnion. In
the epilimnion 8.4 to 41.8% of the summed mortality could be ascribed
to viral lysis, compared to 51.3 to 91.0% in the metalimnion and 88.5 to 94.2% in the hypolimnion. The average ratios of viral lysis to
grazing were 0.3 in the epilimnion, 6.0 in the metalimnion, and 10.6 in
the hypolimnion (Table 2).

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FIG. 3.
Depth profile for bacterial mortality due to viral lysis
and grazing in Lake Plußsee on 23 September 1996. The summed mortality
was calculated by determining the sum of the mortality due to viral
lysis and the mortality due to grazing. Error bars indicate the ranges
of conversion factors for viral lysis and from the standard error for
grazing.
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TABLE 2.
Ratio of bacterial mortality due to viral lysis to
bacterial mortality due to flagellate grazing and viral production
in different depth layers of Lake Plußsee
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In the epilimnion on average 0.15 × 10
10 viruses
liter
1 day
1 were produced, whereas in the
deeper water layers viral production
was ca. 1 order of magnitude
higher, averaging 1.9 × 10
10 viruses
liter
1 day
1 in the metalimnion and 1.2 × 10
10 viruses liter
1 day
1 in
the hypolimnion (Table
2).
Contact model.
In the epilimnion we calculated an average
contact rate of 49.0 viral contacts cell
1
day
1, compared to 180.4 viral contacts
cell
1 day
1 in the metalimnion and 141.8 viral contacts cell
1 day
1 in the
hypolimnion (Fig. 4).

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FIG. 4.
Viral contact rates in different depth layers of Lake
Plußsee on 23 September 1996. Contact rates were estimated from a
contact model for viruses and bacteria (43). The values are
the means ± standard deviations from four samples.
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Organic matter set free during viral lysis of bacteria.
The
estimated concentrations of organic carbon, nitrogen, and phosphorus
released during viral lysis of bacterioplankton were more than 1 order
of magnitude lower in the epilimnion than in the two deeper water
layers (Table 3). The highest release
rates were found in the hypolimnion. We estimated that the contribution of organic carbon released by viral lysis to the standing stock of DOC
was <0.1% per day.
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TABLE 3.
Estimates of carbon, nitrogen, and phosphorus
concentrations released by viral lysis of the bacterial community
in different depth layers of Lake Plußsee
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 |
DISCUSSION |
The most significant finding of this study was the shift in the
mechanisms controlling bacterial production along the depth profile.
Our data indicate that grazing was the main cause of bacterial
mortality in the oxic epilimnion, whereas viral lysis predominated in
the anoxic hypolimnion. This shift may have major implications for the
fate and cycling of organic matter in stratified lakes.
Critical assumptions in estimation of bacterial mortality due to
viral lysis.
Conversion factors were used to relate the FVIC to
bacterial mortality due to viral lysis. These conversion factors were
derived from thin sections of isolated virus-host systems
(50), whereas we examined whole cells. However, previously
we have argued that the conversion factors are also applicable to whole
cells (64). A study has shown that the FVIC determined by
using whole-cell examination was much lower than the FVIC obtained by
using thin sections (22). The high centrifugation speeds and
the times usually used for the whole-cell method can disrupt infected
cells (unpublished data) and might have resulted in the lower FVIC
obtained with this method by Fuhrman and Noble (22). In our
study we reduced the centrifugation speed and time, which avoided
disruption of visibly infected cells, and we found that the values
obtained from the whole-cell examination averaged 78% of the values
obtained by using thin sections (Table 1). Thus, the whole-cell method systematically underestimated the FVIC; however, the differences were
moderate and similar at all depths. The difference between the two
methods might be due to pigmentation of cells, which prevented examination by the whole-cell method, although viruses were detected within pigmented Synechococcus sp. cells in the Gulf of
Mexico (60). Also, cells might have lysed during
centrifugation, although we reduced the centrifugation speed and time.
Moreover, viruses within cells might be more easily detected in thin
sections (detection limit, three viruses) than in whole cells
(detection limit, five viruses). Overall, our data indicate that the
whole-cell examination resulted in a conservative estimate of the
effect of viral lysis on bacteria.
Frequency of visibly infected bacteria.
FVIC data are
available for a variety of freshwater and marine environments. In
marine waters, the FVIC ranged from 0 to 7% in free-living and
attached bacteria from various environments (48, 49, 55,
66). Along a salinity gradient in solar salterns, the FVIC were
between <0.04 and 3.76% (28). In Lake Constance, the FVIC
ranged from <0.1% to 1.7% ± 1.2% (30), and the FVIC in
a backwater system of the River Danube were between 0 and 4% (39). In Lake Plußsee the FVIC ranged from 0.7 to 9.0%
(Fig. 2). The value obtained for the anoxic hypolimnion (9.0%) is the highest FVIC published so far for natural bacterial communities (when
the FVIC was not corrected for damaged cells, a maximum value of 6.4%
was observed). For an as-yet-unidentified archaeal species in a solar
saltern a maximum FVIC of 6.7% was observed (28). Bratbak
et al. (12) obtained values of up to 40% by using
whole-cell examination after incubation of the entire bacterial community with streptomycin, which supports lysis of the cells. It is
not clear why the streptomycin treatment resulted in those high FVIC.
However, since streptomycin can induce the lytic cycle in lysogenized
bacteria (7), induction of lysogenized cells could have
contributed to the high FVIC.
Frequency of intact cells.
It has been known for a long time
that only a fraction of the bacterioplankton community is active or
alive. The data of Zweifel and Hagström (69) indicated
that only 2 to 32% of the members of natural marine bacterial
communities collected in the Baltic Sea, the North Sea, and the
Mediterranean Sea contained a nucleoid, and these authors assumed that
the non-nucleoid-containing bacteria (ghosts) (i.e., the majority of
bacterioplankton) are inactive or even dead. However, this method
resulted in an underestimate of the living fraction of bacterioplankton
in samples from the coastal Pacific Ocean off California when the data
were compared with data obtained by autoradiography and with universal
16S rRNA-targeted probes (34). Using electron microscopy,
Heissenberger et al. (29) demonstrated that on average ca.
25% of bacteria from the Mediterranean Sea were empty, ca. 25% were
damaged (i.e., they had a shrunken cytoplasmic membrane or only
remnants of plasma), and ca. 50% were intact. We found that between 70 and 80% of the bacterial cells were intact in Lake Plußsee.
Although it is not certain that all intact cells were alive, it
can be assumed that viruses can replicate only in undamaged bacteria.
Thus, the FVIC was calculated by determining the percentage of intact
cells. Since previously published data on the FVIC in aquatic systems were not corrected for damaged cells, they are probably underestimates of the effect of viral lysis on bacterial mortality. However, data on
cell integrity should be viewed with some caution, since it is not
possible to completely exclude preparation artifacts.
Viral production.
In Lake Constance the estimated production
of viruses ranged from 0.1 × 109 to 2.5 × 109 viruses liter
1 day
1
(30), whereas the estimated production of viruses in a
backwater system of the River Danube ranged from 1.0 × 1010 to 3.0 × 1010 viruses
liter
1 day
1 (calculated from the bacterial
lysis rate and burst sizes given by Mathias et al.
[39]). The average levels of viral production in the
different water layers of Lake Plußsee ranged from 0.2 × 1010 to 1.9 × 1010 viruses
liter
1 day
1 (Table 3) and thus were higher
than the viral production rates in Lake Constance but slightly lower
than the viral production rates found in the River Danube backwater
system. Although the FVIC detected in our study occasionally exceeded
the values determined by Mathias et al. (39), the viral
production rates were lower. This can be explained by the fact that the
bacterial production rates were higher in the backwater system (range,
1.4 × 109 to 6.2 × 109 cells
liter
1 day
1) than in Lake Plußsee (range,
0.2 × 109 to 1.5 × 109 cells
liter
1 day
1) and thus sustained higher
rates of viral production. Also, differences in the methods used to
assess viral production can account for some of the differences between
the studies.
Bacterial mortality.
When we used the model of Proctor et al.
(50) and the average conversion factor, the bacterial
mortality due to viral lysis ranged from 7.7 to 27.8% in the
epilimnion, from 19.6 to 46.8% in the metalimnion, and from 38.4 to
97.3% in the hypolimnion of Lake Plußsee. When the same approach was
used, the bacterial mortality due to viral lysis ranged from less than
0.11 to 18.4% in Lake Constance (calculated from the data in reference
30) and from 10.8 to 43.2% in a backwater system of
the River Danube (39). Thus, the metalimnion and hypolimnion
of Lake Plußsee exhibited the greatest viral control of bacterial
production found so far for limnetic systems.
Studies investigating the contribution of grazing and viral lysis to
bacterial mortality have shown that the effect of viral
lysis on
bacterial mortality varies widely, but can be as large
as the effect of
grazing (
22,
28,
55,
66). In this study
we showed that the
mechanism for regulating bacterial production
changed with depth from
grazing control in the epilimnion to control
due to viral lysis in the
hypolimnion. It has been speculated
previously that the role that
viruses play in bacterial mortality
increases in situations in which
flagellate grazing is reduced
(
66) (e.g., by top-down
control of flagellates by larger protists
or daphnids
[
24]). Here, we showed that in anoxic waters, where
grazing rates are low, viral lysis is the major factor controlling
bacterial production. A lack of control of hypolimnetic bacteria
by
grazing was also observed in another study of Lake Plußsee
(
40), and this lack is probably due to a low number of
anaerobic
protozoan species or to low grazing rates of these species.
The
bacterial community in the epilimnion and metalimnion is ca. twice
as diverse as the bacterial community in the hypolimnion (
17,
32). Thus, in addition to the lack of significant grazing, the
low diversity of the bacterial community (i.e., high levels of
a few
host cells) might explain the high mortality due to viral
lysis found
in this depth layer. The low diversity in the hypolimnion
might also
explain why bacterial mortality due to viral lysis
was higher in the
hypolimnion than in the metalimnion, although
the contact rates per
cell were lower. Low microbial diversity
in anoxic waters compared to
oxic waters was also detected in
the Baltic Sea (
33).
Additional studies will have to show whether
the observed change with
depth in the mechanisms that control
bacterial production also occurs
in other seasons or other systems.
Chróst and Rai (
13) found no significant correlation
between bacterial biomass and bacterial production in the euphotic
zone
of Lake Plußsee and argued that this could be the result
of strong
grazing pressure. In the aphotic zone the strong correlation
found
between bacterial biomass and bacterial production indicates
that there
is a low level of predatory control (
13). Our data
showed
that the summed mortality of bacteria is ca. 100% in the
epilimnion
(Fig.
3), indicating that top-down control of bacterial
production
occurs in this water layer. In the metalimnion the
summed mortality
averaged 22.4 to 56.7%, showing that viral lysis
and grazing could not
control bacterial production. Other predators,
such as cladocerans
(
3), might have been responsible for the
remaining
mortality. Alternatively, a lack of complete top-down
control might
have resulted in the high bacterial abundance and
production in this
water layer. In the hypolimnion most of the
mortality could be ascribed
to viral lysis and flagellate grazing,
since the summed mortality
averaged 74.7%. A seasonal study performed
in Lake Plußsee showed
that cladocerans and protists other than
flagellates are rare in the
hypolimnion (
40) and thus could
not contribute significantly
to bacterial mortality.
Since we used previously published clearance rates, we might have
either underestimated or overestimated grazing, if the actual
clearance
rates were higher or lower. Thus, the estimated mortality
due to
grazing should be considered with caution. An underestimate
of the
clearance rates could have caused a low estimate for summed
mortality
(e.g., in the metalimnion). However, even if we used
the upper ranges
of the clearance rates (defined by the standard
error) reported for the
metalimnion and hypolimnion, the bacterial
mortality values due to
grazing were only 4.7 to 45.5% and 7.4
to 13.2%, respectively. Since
the whole-cell examination underestimated
the FVIC by ca. 20% (Table
1), we might have underestimated the
effect of viral lysis. This could
explain in part why the summed
mortality was not always 100% in the
metalimnion and hypolimnion.
In the present study predatory control was
calculated by dividing
grazing rates by bacterial production. However,
flagellates might
also prey on bacterial ghosts, which do not
contribute to bacterial
production. Although grazing rates on these
cells might be lower
than grazing rates on active or living cells,
grazing on ghost
cells might have resulted in an overestimate of
predatory control
of bacteria by flagellates.
Organic matter released by viral lysis of bacteria.
DOC
concentrations decreased slightly with depth, whereas SRP and
NH4 concentrations increased with depth. The high
chlorophyll a concentrations in the photic zone (Fig. 3)
might sustain high concentrations of organic carbon (e.g.,
concentrations due to photosynthetic extracellular release of
carbon-rich substances). This depth distribution is typical for late
summer stratification (42) and could indicate that
phosphorus or (less likely) nitrogen is the limiting nutrient in the
epilimnion, whereas in the hypolimnion bacteria were limited by the
supply of organic carbon. More detailed studies have shown that the DOM
in the hypolimnion of Lake Plußsee consists of refractory carbon
skeletons depleted of nitrogen and phosphorus (42). The
estimated contribution of organic carbon released by viral lysis of
bacteria to the DOC pool was small (<0.2% day
1) (Table
3). Since the DOM in Lake Plußsee is depleted with respect to
phosphorus and nitrogen compared to bacteria (42), the
contribution of organic phosphorus and nitrogen released by viral lysis
into the pool of dissolved organic nitrogen and phosphorus is probably greater than the contribution of organic carbon. Overall, viral lysis
of bacteria did not seem to contribute significantly to the DOM pool.
However, releases of even small amounts of organic phosphorus and
nitrogen in the epilimnion and organic carbon in the hypolimnion might
stimulate bacterial growth, since bacterial lysis products are very
likely readily utilizable by bacteria. Stimulation of bacterial growth
by lysis products was also observed in a marine environment
(41). Considering the fact that a cell is encountered by ca.
50 to 180 viruses per day, it is also possible that viruses are an
important diet for bacteria. Also, viruses might be a diet for HNFs.
Support for this hypothesis comes from estimates that viruses can be an
important source of carbon, nitrogen, and phosphorus when there are
106 bacteria ml
1 and 107 to
108 viruses ml
1 (26), as in our
study (Fig. 2).
Implications.
Our data indicate that in oxic waters of Lake
Plußsee the majority of the bacterial production was removed by HNFs
and thus could be transferred to higher trophic levels of the food web. The high mortality of bacteria due to viruses in anoxic waters indicates that an important fraction of bacterial production remains in
the viral loop. This is supported by the finding based on models and
experiments that viral lysis and lysis products can strongly stimulate
bacterial production and carbon uptake (20, 22, 41). Also,
the addition of concentrates of the natural virus community to seawater
incubation mixtures resulted in a higher FVIC and in increased
concentrations of dissolved amino acids and carbohydrates
(65). Thus, a significant portion of organic matter in
anoxic water could be cycled several times in the viral loop before it
gets mineralized. On the other hand, Proctor and Fuhrman
(49) argued that the cell lysis products could act as glue
for the formation of organic aggregates, and Peduzzi and Weinbauer
(46) found that the addition of the virus size fraction of
DOM to seawater resulted in an increase in the size of organic aggregates. Thus, the high lysis rates of bacteria in anoxic water could cause higher rates of sinking of aggregates and higher rates of
incorporation of organic matter into the sediment. Although additional
studies will have to show whether viral lysis increases the
mineralization of DOM or the rates of incorporation of organic matter
in the sediments, it is clear that viral lysis is an important mechanism for regulation of organic matter cycling in lakes.
 |
ACKNOWLEDGMENTS |
We thank W. Lampert and D. Albrecht of the Max Planck Institute
for Limnology in Plön, Germany, for providing lab space and data
on nitrogen and phosphorus and ballerina K. Dominik for help during
field and lab work. The help of H. Lünsdorf with electron microscopy is acknowledged. We also thank G. J. Herndl and I. Kolar for the organic carbon analyses and S. W. Wilhelm for
comments on the manuscript. The comments of two reviewers improved the manuscript.
This work was supported by grant BEO-0319433B from the
Bundesministerium für Bildung, Wissenschaft, Forschung
und Technologie.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: GBF
National
Research Center of Biotechnology, AG Molecular Microbial Ecology,
Mascheroder Weg 1, D-38124 Braunschweig, Germany. Phone:
49-531-6181-440. Fax: 49-531-6181-411. E-mail: mgw{at}gbf.de.
 |
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