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Appl Environ Microbiol, February 1998, p. 555-563, Vol. 64, No. 2
0099-2240/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Molecular Characterization and Heterologous
Expression of the Gene Encoding a Low-Molecular-Mass Endoglucanase
from Trichoderma reesei QM9414
Hirofumi
Okada,1
Kohji
Tada,1
Tadashi
Sekiya,1
Kengo
Yokoyama,1
Akinori
Takahashi,1
Hideki
Tohda,2
Hiromichi
Kumagai,2 and
Yasushi
Morikawa1,*
Department of Bioengineering, Nagaoka
University of Technology, 1603-1 Kamitomioka, Nagaoka, Niigata
940-21,1 and
Research Center, Asahi
Glass Co., Ltd., Hazawa, Kanagawa-ku, Yokohama-shi, Kanagawa
221,2 Japan
Received 12 June 1997/Accepted 28 November 1997
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ABSTRACT |
We have isolated the genomic and cDNA clones encoding EG III (a
low-molecular-mass endo-
-1,4-glucanase) gene from
Trichoderma reesei QM9414. The nucleotide sequence
of the cDNA fragment was verified to contain a 702-bp open reading
frame that encodes a 234-amino-acid propeptide. The deduced protein
sequence has significant homologies with family H
endo-
-1,4-glucanases. The 16-amino-acid N-terminal sequence was
shown to function as a leader peptide for possible secretion. Northern
blot analysis showed that the EG III gene transcript, with a length of
about 700 bp, was expressed markedly by cellulose but not by glucose.
The protein has been expressed as a mature form in Escherichia
coli and as secreted forms in Saccharomyces
cerevisiae and Schizosaccharomyces pombe under the
control of tac, alcohol dehydrogenase (ADH1),
and human cytomegalovirus promoters, respectively. The S. cerevisiae and Schizosaccharomyces pombe recombinant
strains showed strong cellulolytic activities on agar plates containing
carboxymethyl cellulose. The E. coli strain expressed small
amounts of EG III in an active form and large amounts of EG III in an
inactive form. The molecular masses of the recombinant EG IIIs were
estimated to be 25, 28, and 29 kDa for E. coli, S. cerevisiae, and Schizosaccharomyces pombe,
respectively, by immunoblot analysis following sodium dodecyl sulfate-polyacrylamide gel electrophoresis. Parts of the yeast recombinant EG IIIs decreased their molecular masses to 25 kDa after
treatment with endoglycosidase H and
-mannosidase, suggesting that
they are N glycosylated at least partly.
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INTRODUCTION |
Trichoderma
reesei, a filamentous mesophilic fungus, is well-known to secrete
the high cellulolytic activity required for a full spectrum of
digestion of crystalline cellulose. For this fungus, two
cellobiohydrolases (CBH I and II) and three endo-
-1,4-glucanases (EG
I, II, and V), which belong to cellulase families C, B, C, A, and K,
respectively (2, 9, 25, 31), have been identified and
characterized (19, 25, 26, 29, 32, 34). All these cellulases
have been shown to contain a cellulose-binding domain (CBD) and one or
two linker regions comprised of proline and hydroxy amino acids
(2, 31). Apart from these cellulases, the existence of a
low-molecular-mass endoglucanase from T. reesei has
been reported by several researchers (1, 6, 30), and we also have purified it (then named EG L and now renamed EG III) from a crude
enzyme preparation of T. reesei PC-3-7 (12).
EG III has a molecular mass of 25 kDa, which is smaller than those of other EGs (EG I and II) identified thus far, and was shown to play a
role in degrading crystalline cellulose (Avicel) in concert with CBH I
(12). It was presumed in a cellulose binding assay, however,
that EG III has no CBD, in contrast to CBH I. We also showed that no EG
III internal peptide sequences, which were partially examined, exist in
the deduced amino acid sequences of other known T. reesei cellulases. On the other hand, the peptide sequences had significant homology with that of F1-carboxymethyl cellulase (F1-CMCase) from Aspergillus aculeatus (17),
which belongs to cellulase family H. These results showed that EG III
might not be a proteolytic artifact from the other cellulases but that
it may be coded by another gene in the Trichoderma
genome. To verify this speculation, we have isolated a clone of the EG
III gene and deduced its protein sequence. Recently, Ward et al.
(36) presented a preliminary report about the cloning and
sequencing of a small, high-pI endoglucanase (named EG III). However,
they showed only its amino acid sequence and not those of the cDNA and
genomic clone.
To investigate the enzymatic characteristics of the individual
cellulases, the cloned cellulase genes need to be expressed in
cellulase-nonproducing microorganisms. The yeast Saccharomyces cerevisiae has been used as the host for the expression of the fungus cellulase genes. T. reesei cellulases (20,
21, 25, 34) were produced and effectively secreted into a growth
medium by the yeast, although the yields depended on cellulase species and the secreted proteins were heterogeneously N glycosylated. Then we
investigated whether or not the fission yeast Schizosaccharomyces pombe could be used for the heterologous expression of the fungus cellulases instead of S. cerevisiae. Consequently, it was
found that recombinant Schizosaccharomyces pombe effectively
secreted T. reesei CBH II to a level over 100 µg/ml
in the growth medium, in which species of two molecular masses resulted
from the difference in levels of glycosylation, and that the
recombinant CBH IIs purified from the culture supernatant had almost
the same enzymatic characteristics as those of the native one
(14). Furthermore, T. reesei EG I, II, and
V, as well as xylanases I and II, were also successfully secreted by
the yeast (unpublished results).
Expression of nonglycosylated forms of fungal cellulases in a manner
comparable to that of bacterial cellulases has been attempted for
A. aculeatus F1-CMCase (16) and T. reesei CBH I (10) with Escherichia coli as
the host. The inactive, aggregated CBH I protein was produced, and
F1-CMCase could be expressed as an active form in E. coli cells.
In this paper we describe the cloning of the cDNA and genomic DNA
encoding EG III from T. reesei QM9414 and discuss their molecular features and structural relationships with other
-glucanases. Furthermore, expression of the EG III cDNA in E. coli, S. cerevisiae, and Schizosaccharomyces
pombe with corresponding high-expression vectors was conducted.
The egl3 gene cloned by us provides a good example for
evaluating which organism is suitable for expressing fungal cellulase
genes.
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MATERIALS AND METHODS |
Strains and vectors.
The genotypes of the microbial strains
and plasmids used in the present study are summarized in Table
1. T. reesei QM9414 was
maintained on a potato dextrose agar slant. The T. reesei genomic DNA library was prepared in the lambda EMBL3 vector
(Stratagene). Strains LE392 and P2392 (Stratagene) were used as hosts
in the preparation of and screening from the genomic library. Plasmids pBluescript II KS(+) (Stratagene) and pT7Blue-T (Novagen) were used for
subcloning and sequencing of restriction enzyme-treated DNA fragments
and PCR products, respectively. Plasmids pKK223-3 (Pharmacia) and pUC18
(Takara Shuzo, Kyoto, Japan) were used for the construction of the
E. coli expression vector. pUC18 was digested with
PvuII to eliminate the fragment including the lac
promoter, and the remaining fragment was ligated with the DNA fragment
obtained after digestion of pKK223-3 with PvuII that
contains the tac promoter and the rrn terminator,
to lead to substitution of the multiple-cloning site derived from
pKK223-3 for that from pUC18. The resulting plasmid, named pAG9-3, was
used as an E. coli expression vector. S. cerevisiae expression vector pGAD10
was prepared by digesting pGAD10 (Clontech) with HindIII to remove the GAL4
activation domain and by religation. The Schizosaccharomyces
pombe expression vector pCL2M was constructed by converting the
AflIII site in pTL2M-2 to a BglII site
(33) by site-directed mutagenesis. E. coli JM105 (Pharmacia), S. cerevisiae INVSC1 (Invitrogen), and the
Schizosaccharomyces pombe leu1 mutant were used as hosts for
EG III expression.
Cloning of the genomic egl3 DNA.
Construction of
the genomic DNA library was carried out as follows. The genomic DNA
isolated from T. reesei QM9414 was partially digested
with Sau3AI. The digested DNA fragments were
dephosphorylated with calf intestine alkaline phosphatase (Boehringer
Mannheim) and ligated with the BamHI-digested EMBL3 vector.
The DNAs were packaged in vitro, and E. coli P2392 was
infected by the recombinant phages. The genomic library contained about
106 clones, with an average insert size of 15 kbp. Two
internal amino acid sequences determined by sequencing
lysylendopeptidase-digested peptides were used for the design of PCR
oligonucleotide primers (Fig. 1) in light
of the similarity of those amino acid sequences to that of the
F1-CMCase from A. aculeatus (17). PCR was
performed (7) by using primer 1 as a sense primer, primer 2 as an antisense primer (Fig. 1), and T. reesei QM9414
chromosomal DNA as a template. PCR conditions were 94°C for 1 min
(denaturation), 42°C for 1 min (annealing), and 72°C for 2 min
(extension). These conditions were repeated for 30 cycles. The
amplified PCR fragment identified as an egl3 gene by
nucleotide sequencing was labelled with a BcaBEST labelling kit (Takara
Shuzo) and [
-32P]dCTP according to the supplier's
instructions. The labelled fragment was used for screening clones from
the amplified chromosomal DNA library (8 × 104
clones) plated to a density of 1,000 PFU/87-mm-diameter plate. Plaques
grown on plates were transferred to a Hybond-N nylon membrane (Amersham) and cross-linked to the surface of the membrane by UV light
in a UV cross-linker (model; CL-1000; UVP, Inc.). The membrane was
prehybridized in 2× SSC (1× SSC is 0.15 M NaCl plus 0.015 M sodium
citrate)-10× Denhardt's reagent-0.5% sodium dodecyl sulfate (SDS)
for 2 h at 60°C and hybridized with the 32P-labelled
PCR fragment for 16 h at 60°C. The membrane was washed with 6×
SSC-0.1% SDS for 20 min at 60°C after being washed briefly with the
same solution at room temperature and finally with 2× SSC-0.1% SDS
for 20 min at 60°C. Positive clones were purified by a further two
rounds of screening.

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FIG. 1.
Partial amino acid sequences of the EG III purified from
T. reesei and the design of the oligonucleotide primers
used in PCR. (A) Amino acid sequences from the peptides obtained by
lysylendopeptidase digestion. Fraction numbers indicate the peak
numbers of the digested peptides eluted by high-performance liquid
chromatography. The uncertain amino acids are in parentheses. (B)
Designs of oligonucleotide primers based on the fraction 2 and fraction
3 peptides. The letter N denotes a mixture of all four bases. I, P, and
Y denote an inosine, a mixture of adenine and guanine, and cytosine and
thymine, respectively. Fr., fraction.
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Isolation of the egl3 cDNA gene.
The
egl3 cDNA clone was isolated from a T. reesei QM9414 first-strand cDNA library, which was prepared as
described previously (24), by using the PCR method with the
gene sequence-specific primers (sense,
5'-GGAGATCTATGAAGTTCCTTCAAGTCCTCC-3', and antisense, 5'-CCAAGCTTAGTTGATAGATGCGGTCCAGGA-3') corresponding,
respectively, to the putative amino-terminal and carboxyl-terminal
sequences of the product, deduced from the genomic egl3 DNA
nucleotide sequence. The PCR conditions were the same as those for
cloning of the genomic egl3 DNA except that annealing was
carried out at 50°C. The amplified fragment was ligated with the
pT7Blue-T vector. The egl3 genomic and cDNA fragments were
subcloned into pBluescript.
Sequencing.
The nucleotide sequences were determined with an
ALF automatic DNA sequencer by the Taq cycle sequencing
method (Pharmacia) or with a BcaBEST sequencing kit (Takara Shuzo) and
[
-32P]dCTP, according to the respective supplier's
instructions. The sequences obtained were characterized by using the
Genetyx-Mac genetic information processing software, version 8 (Software Development Co., Ltd., Tokyo, Japan).
Southern and Northern blot analysis.
Standard methods
described by Sambrook et al. (27) were followed. Genomic DNA
(20 µg) was digested to completion with various restriction
endonucleases purchased from New England Biolabs, Inc. (Beverly,
Mass.). Digested DNA fragments were separated on a 1.0% (wt/vol)
agarose gel in 1× Tris-acetate-EDTA buffer.
HindIII-digested
DNA fragments (from Nippon Gene,
Toyama, Japan) were used as size markers.
Each 10 µg of total RNA samples and molecular mass standards
(Promega) was separated on 1.0% (wt/vol) agarose gels in the
presence
of formaldehyde. DNA and RNA fragments in gels were blotted
onto
Hybond-N nylon membranes (Amersham). The membranes were probed
with
32P-labelled
egl3 cDNA. The labelled fragment
was denatured by boiling
for 5 min and used as a hybridization probe as
described above
for the screening of the genomic DNA library.
DNAs from the 10

clones recovered from the genomic library were
digested with the restriction enzymes
BamHI,
EcoRI,
HindIII,
PstI, and
SalI and separated on an agarose gel. The DNA was
transferred
to a nylon membrane and hybridized with the
egl3
internal PCR
fragment as described above.
Production of egl3 in yeasts.
Yeast expression
plasmids were constructed as follows. The egl3 cDNA fragment
was cut from pT7Blue-egl3 with BglII and
HindIII and was inserted in BglII- and
HindIII-digested pCL2M to give pCLegl3 (Fig.
2). The blunted fragment was also ligated
with pGAD10
, which was digested with HindIII and
blunted to generate pGADegl3 (Fig. 2). The obtained plasmids, pCLegl3
and pGADegl3, were used for EG III expression in
Schizosaccharomyces pombe and S. cerevisiae, respectively. pCLegl3 was cotransformed with pAL7 into the
Schizosaccharomyces pombe leu1 mutant as described
previously (5, 15), resulting in Schizosaccharomyces
pombe SP-cmv-egl3. pGADegl3 was transformed into S. cerevisiae INVSC1 by using the Li acetate method of Gietz et al.
(4), resulting in S. cerevisiae SC1-adh-egl3.

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FIG. 2.
Plasmids pGADegl3, pCLegl3, and pAGegl3. Relevant gene
locations are indicated. See the text for details on the construction
of plasmids. ADH1p and ADH1t, promoter and
terminator of the S. cerevisiae ADH1 gene, respectively;
LEU2, LEU2 gene of S. cerevisiae; 2µ
ori, origin of replication of the 2µm plasmid; pUC ori, replication
origin of the E. coli pUC18 plasmid; hCMVp, promoter of the
hCMV gene; SV40p and SV40t, promoter and terminator of the simian virus
40 (SV40) gene, respectively; neor, neomycin resistance
gene of Tn5 conferring G418 resistance in
Schizosaccharomyces pombe; pBR ori, origin of replication of
the E. coli pBR322 plasmid; Ptac, tac
promoter; Trrn, rrnB terminator;
Ampr, ampicillin resistance gene.
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The extracellular EG IIIs produced by transformed
Schizosaccharomyces pombe and
S. cerevisiae were
detected by the plate assay
as described by Farkas et al.
(
3) and by endoglucanase activity
assay of the culture
supernatant. The
Schizosaccharomyces pombe and
S. cerevisiae strains were grown on YEA-G418
25 (0.5%
yeast extract and 3% glucose supplemented with 25 µg of
G418 per ml)
plates for 7 days and leucine-deficient synthetic
complete medium
plates for 4 days, respectively, at 30°C. Both
of the plates were
supplemented with 0.1% carboxymethyl cellulose
(CMC; Wako Pure
Chemical Co., Osaka, Japan). The SC1-adh-egl3
and SP-cmv-egl3 strains
were cultivated in 50 ml of YPDM medium
(1% yeast extract, 2%
peptone, 2% dextrose, 1% malt extract) and
YPDM medium containing 25 µg of G418 per ml (YPDM-G418
25), respectively, at 30°C
in 300-ml shake flasks at 200 rpm. The
culture supernatants were
separated from the cells at the stationary
phase (5.5 days for
S. cerevisiae and 11 days for
Schizosaccharomyces pombe)
by centrifugation, concentrated by 80% saturated ammonium
sulfate
precipitation, and desalted by Bio-gel P-6 (Bio-Rad, Richmond,
Calif.)
column chromatography.
Production of mature EG III in E. coli.
For the
construction of the mature EG III expression plasmid in E. coli, the DNA fragment which was comprised of the mature EG
III-coding region framed with restriction enzyme sites at both ends was
obtained by the PCR amplifying method with the sequence-specific primers and pT7Blue-egl3 as a template. The primers were
5'-GGCCATGGCACAAACCAGCTGTGACCAGTGGGC-3' (sense)
and the same sequence in the antisense direction as the carboxy-terminal primer for amplifying egl3 cDNA (italicized
letters indicate the NcoI restriction site). Because of the
addition of the NcoI site at the 5' end, the protein
expressed in E. coli was expected to have an extension of
two extra amino acids at its amino terminus, Met-Ala-. The PCR fragment
digested with NcoI and HindIII was blunt
ended, ligated with pAG9-3 predigested with EcoRI, and
blunted, generating pAG-megl3 (Fig. 2). pAG-megl3 was transformed into
E. coli JM105 according to the method of Inoue et al.
(8), resulting in E. coli 105-AG-megl3.
The intracellular EG IIIs produced by the recombinant
E. coli strains were detected by the endoglucanase activity assay and
immunoblotting. The transformants were grown for 2 h at 37°C in
2× TY medium (1.6% tryptone, 1% yeast extract, 0.5% NaCl)
supplemented
with 50 µg of ampicillin per ml and, after the addition
of 1 mM
IPTG (isopropyl-

-
D-thiogalactopyranoside), were
further cultivated
for 6 h. The cells harvested by centrifugation
were suspended
in 50 mM acetate buffer (pH 6.0) and disrupted with a
sonicator,
followed by centrifugation, and the resulting supernatant
and
pellet were analyzed for CMCase activity and proteins.
Preparation of antibodies.
Antiserum was prepared against
the purified EG III of T. reesei PC-3-7
(12). Injection into rabbits, immunization, and collection of sera were done by Iwaki Glass.
Biochemical methods.
The endoglucanase activity was assayed
as CMCase activity with CMC as a substrate in 50 mM acetate buffer
(pH 6.0) at 50°C for 15 min. The amount of released reducing sugar
was measured by the 3',5'-dinitrosalicylic acid method described by
Wood and Bhat (37). One unit of enzyme activity was defined
as the amount of enzyme that released 1 µmol of glucose equivalent
per min. SDS-polyacrylamide gel electrophoresis (PAGE) was done with
12.5% polyacrylamide gels with the Mini-PROTEAN II system (Bio-Rad) in
accordance with the manufacturer's instructions. Proteins were blotted
onto polyvinylidene difluoride membranes (Bio-Rad) by using a
TRANS-BLOT semidry transfer cell (Bio-Rad) and treated with the EG III
antiserum. Endoglycosidase H (endo H; Seikagaku-Kogyo, Tokyo, Japan)
and
-mannosidase (Wako Pure Chemical) treatment was carried out as
described previously (14).
Nucleotide sequence accession number.
The DDBJ, EMBL, and
GenBank accession number of the egl3 gene sequence is
AB003694.
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RESULTS |
Isolation of genomic and cDNA clones and sequence analysis.
The N-terminal amino acid of purified low-molecular-mass EG III from
T. reesei PC-3-7 was blocked, but its four digested
peptide sequences were determined as shown in Fig. 1. In order to
amplify a specific sequence corresponding to the egl3 gene,
a PCR-based approach was taken. Under the experimental conditions
described, a specific band of ca. 400 bp was amplified from
T. reesei chromosomal DNA (data not shown). This band
was then subcloned into the pT7Blue-T vector and checked by sequencing.
The DNA fragment was identified as a part of the egl3 gene,
since the internal peptide sequence (fraction 12 in Fig. 1) was found
in the protein sequence deduced from the gene.
The PCR fragment was labelled and used as a probe to select the
egl3 gene from a
T. reesei QM9414 genomic
library. Upon searching
among ca. 80,000 phage plaques, 10 hybridizing
clones (

L1 to

L10) were isolated. Only one clone (

L7) was
chosen for further
studies because all clones included the same
egl3 gene. A partial
restriction map of this genomic region
is presented in Fig.
3A.
The 2.0-kb
HindIII-
HindIII restriction fragment was
sequenced,
and the deduced protein sequence was found to include the
four
internal peptide sequences shown in Fig.
1 (Fig.
3B). By comparing
them with the
A. aculeatus F1-CMCase genomic sequence
(
18),
putative N- and C-terminal amino acid sequences of EG
III were
presumed. Based on this assumption,
egl3 cDNA was
isolated by
the PCR cloning method from a first-strand cDNA library and
used
as a template, which was prepared from
T. reesei
QM9414 grown
on Avicel as a sole carbon source. The genomic and cDNA
sequences
along with the deduced protein sequence are shown in Fig.
3B.
Two introns (55 and 66 bp) are present in positions identical
to that
of the F1-CMCase gene (
18), and the suggested splicing
signals showed homology with those of the
T. reesei
genes sequenced
so far (data not shown). There is a putative TATA box
located
96 bp upstream from the ATG of the initiation codon. Both the
genomic and cDNA sequences were positively identified as EG III
by the
presence of all the partial amino acid sequences previously
determined
from the purified protein (Fig.
3B). Some minor differences
between the
peptide and DNA sequences are due to uncertain determinations
made
during the peptide sequencing. The mature protein presumably
starts at
amino acid 17, glutamine, which seemed to be pyroglutamylated,
since
the

-amino group of the N-terminal amino acid of the purified
EG III
was blocked like those of other
T. reesei cellulases,
all
of which are pyroglutamic acid (
12,
19,
26,
29,
32,
34).
The peptide composed of 16 amino acids (Fig.
3B) showed
the typical
structure of a signal peptide with a high hydrophobic
index following a
positively charged amino acid (
35). The protein
deduced from
the nucleotide sequence has 234 amino acids and a
molecular mass of
25,158 Da for the unprocessed form, and if the
initial 16 amino acids
are excluded, the calculated molecular
mass is 23,480 Da, in good
agreement with the biochemical data
(
12).

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FIG. 3.
Restriction map and sequencing strategy of the genomic
DNA for T. reesei egl3 (A) and the complete nucleotide
sequence of the gene and deduced amino acid sequence of the EG III
protein (B). (A) The HindIII fragment of the
egl3 genomic clones is shown as a bar, and the
egl3 structural gene region is shown as a filled box. The
orientations and lengths of coverage of sequencing primers are shown as
horizontal arrows. (B) Intron sequences are in lowercase type. The
standard one-letter amino acid code is used. The presumed signal
sequence is indicated by the dotted underline. The internal amino acid
sequences determined for the lysylendopeptidase-digested peptides of
the purified T. reesei EG III are underlined. The amino
acid sequences for the design of PCR primers are double underlined.
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When the EG III sequence was compared with those available from the
databases, F1-CMCase (
17) from
A. aculeatus,
CMCase-I
(
24) from
Aspergillus kawachii, and
CelS (
23) from
Erwinia cartovora subsp.
cartovora showed 56, 47, and 26% homology with
EG III on
the amino acid level, respectively (Fig.
4). These are
all EGs which belong to the
so-called family H cellulases.

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FIG. 4.
Alignment of the EG III sequence with sequences of
family H cellulases, namely, A. aculeatus F1-CMCase
(29), A. kawachii CMCase-I (37),
and Erwinia carotovora subsp. carotovora CelS
(35). The standard one-letter amino acid code is used. Amino
acid residues identical to those of EG III are indicated by white
letters in black boxes, whereas the consensus indicates amino acid
residues that are identical in all sequences. Hyphens indicate gaps.
Putative catalytic amino acid residues are indicated by asterisks.
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EG III gene and mRNA.
In order to test whether the
egl3 gene is present in only one or multiple copies in the
T. reesei QM9414 genome, Southern blotting was
performed using total chromosomal DNA digested with several restriction
enzymes and the egl3 cDNA as a probe. As shown in Fig.
5A, one hybridizing band is present
in all the resulting DNA fragments except for those digested by
PstI. The PstI-cut fragments appear to display
two hybridizing bands because there is one PstI site in the
egl3 gene (Fig. 3A). This result indicates that
T. reesei may have one copy of the egl3 gene
in its chromosomal DNA.

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FIG. 5.
Southern hybridization analysis of T. reesei genomic DNA (A) and Northern hybridization analysis of
T. reesei RNA (B). (A) Aliquots (20 µg) of
T. reesei genomic DNA were digested with each of the
following restriction enzymes: BamHI, EcoRI,
HindIII, and PstI (lanes 1 to 4, respectively). The resulting fragments were fractionated by agarose gel
electrophoresis and then transferred to a nylon membrane for
hybridization. The probe used was the egl3 cDNA. The
fragments of lambda DNA digested with HindIII were used
as molecular size markers. (B) Total RNA samples (10 µg each) were
isolated from cells grown in medium containing glucose (lane 1) and
Avicel (lane 2). The positions of migration of RNA molecular standards
are shown on the left.
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To assess if
egl3 is preferentially transcribed under the
same conditions as other cellulase genes in
T. reesei
QM9414, Northern
blotting was done with total RNA isolated from
T. reesei grown
on glucose or on Avicel as a sole
source of carbon (Fig.
5B).
The
egl3 mRNA was detected in
the Avicel-grown cells but not in
the glucose-grown cells. This may be
the same expression pattern
as that of other
T. reesei
cellulase genes which are induced by
cellulose and repressed by
glucose. Thus, both the
egl3 gene and
the other cellulase
genes have a common regulatory mechanism on
the transcriptional level
at least in part. The size of the mRNA
was around 700 bp, in accordance
with that of the
egl3 cDNA coding
sequence, indicating that
5' and 3' noncoding regions of
egl3 mRNA are very short.
Expression of the egl3 gene in yeasts.
The
egl3 cDNA was cloned into the S. cerevisiae
multicopy expression vector pGAD10
under the control of
the constitutive ADH1 promoter, and the resulting plasmid,
pGADegl3, was transformed into S. cerevisiae INVSC1.
In a similar manner, the egl3 expression vector for Schizosaccharomyces pombe, pCLegl3, was
constructed by inserting the cDNA into the copy-number-controlled
vector pCL2M under control of the human cytomegalovirus (hCMV)
promoter. pCLegl3 was cotransformed into the Schizosaccharomyces
pombe leu1 mutant with pAL7 harboring Schizosaccharomyces
pombe ars and stb and S. cerevisiae LEU2
genes. The obtained recombinants, S. cerevisiae SC1-adh-egl3
and Schizosaccharomyces pombe SP-cmv-egl3, were analyzed for
endoglucanase activity on CMC plates (Fig.
6). These strains produced clear halos,
indicating that the Trichoderma enzyme was secreted
in active forms by the yeasts. The control strains, S. cerevisiae INVSC1 transformed with the vector pGAD10
and the Schizosaccharomyces pombe leu1 mutant transformed with
pCL2M, showed no endoglucanase activity in the plate assay.

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FIG. 6.
Hydrolysis halos produced on CMC plates by S. cerevisiae SC-adh-egl3 (A) and Schizosaccharomyces
pombe SP-cmv-egl3 (B) expressing the egl3 gene of
T. reesei. The control strains, S. cerevisiae and Schizosaccharomyces pombe containing
only the pGAD10 (A) and pCL2M (B) vectors, respectively, were on the
lower halves of the plates.
|
|
S. cerevisiae SC1-adh-egl3,
Schizosaccharomyces
pombe SP-cmv-egl3, and the control yeast strains were cultivated
in shake
flasks with YPDM medium for
S. cerevisiae and with
the medium
containing 25 µg of G418 per ml for
Schizosaccharomyces pombe.
The
S. cerevisiae
SC-adh-egl3 strain had the same growth rate
as the control strain
transformed with the vector pGAD10

. The
CMCase activity of the
SC-adh-egl3 strain was observed from the
beginning of growth and
reached as much as 17 mU/ml after 158
h (Fig.
7A). On the other hand, the growth rate
of the
Schizosaccharomyces pombe SP-cmv-egl3 strain was very
low compared with that of the
control strain and the time taken to
reach the stationary phase
was about 5 days. Furthermore, the
endoglucanase activity of the
supernatant gradually increased beyond
the stationary phase and
reached 400 mU/ml after 275 h (Fig.
7B).
The concentrated culture
supernatants were analyzed for EG III protein
by SDS-PAGE followed
by immunoblotting (Fig.
8A). The apparent molecular masses of
the
extracellular EG IIIs produced by the yeasts were approximately
28 kDa
in
S. cerevisiae and 29 kDa in
Schizosaccharomyces
pombe,
which are larger than that of the native enzyme. Treatments
of
the culture fluids with endo H altered the apparent molecular
mass
positions of parts of the EG IIIs to about 25 kDa, the same
position as
that of the purified enzyme from
T. reesei (Fig.
8B).
Additional

-mannosidase treatment gave a complete shift of the
upper
band to the 25 kDa band for
S. cerevisiae EG III, but no
more change from the SDS-PAGE pattern was observed in the
Schizosaccharomyces pombe enzyme (Fig.
8B). This
result indicates that the extracellular
EG IIIs produced in the yeasts
are heterogeneously N glycosylated,
as has been shown for many other
extracellular heterologous proteins
expressed in
S. cerevisiae and for the
T. reesei CBH II expressed
in
Schizosaccharomyces pombe (
14). The native
enzyme appeared
to remain significantly unaltered by endo H treatment
and further

-mannosidase treatment (data not shown). This result is
consistent
with our previous data (
12) and indicates that
the
T. reesei EG III is not glycosylated.

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|
FIG. 7.
Time courses of cell growth ( and ) and CMCase
activity ( and ) with S. cerevisiae (A),
Schizosaccharomyces pombe (B), and E. coli (C)
transformants. (A) and , S. cerevisiae SC-adh-egl3;
and , the control S. cerevisiae; (B) and ,
S. pombe SP-cmv-egl3; and , the control
Schizosaccharomyces pombe; (C) E. coli
105-AG-egl3 with IPTG addition ( and ) and no addition ( and
).
|
|

View larger version (44K):
[in this window]
[in a new window]
|
FIG. 8.
SDS-PAGE and immunostaining of extracellular EG IIIs
secreted by S. cerevisiae and Schizosaccharomyces
pombe and intracellular EG IIIs produced by E. coli.
(A) Purified T. reesei EG III (lane 1), culture
supernatants of Schizosaccharomyces pombe SP-cmv-egl3 (lane
2), the control Schizosaccharomyces pombe (lane 3), S. cerevisiae SC-adh-egl3 (lane 4), the control S. cerevisiae (lane 5), crude extracts of E. coli
105-AG-egl3 (lane 6), the control E. coli (lane 7), and the
soluble fraction (lane 8) and the cell debris fraction (lane 9) of the
crude extract of E. coli 105-AG-egl3. (B) Purified
T. reesei EG III (lane 1), recombinant EG III from
Schizosaccharomyces pombe (lanes 2 to 4), and recombinant EG
III from S. cerevisiae (lanes 5 to 7). Lanes 2 and 5 were
untreated, lanes 3 and 6 were treated with endo H, and lanes 4 and 7 were treated with endo H and -mannosidase.
|
|
Expression of mature EG III in E. coli.
The mature form
of EG III cDNA was made by PCR amplification to delete the putative
signal sequence (see Materials and Methods). Thus, the amplified
fragment was introduced into pAG9-3 under the control of the
tac promoter and the resulting plasmid, pAGegl3, was
transformed into a lacIq strain, JM105. The
transformant obtained, 105-AG-egl3, was cultured, and IPTG was
added to induce the recombinant EG IIIs. The cell extract of strain
105-AG-egl3 had endoglucanase activity of 25 mU/ml of the medium (Fig.
7C). Most of the produced protein was, however, detected in the cell
debris as an inactive form (Fig. 8A), suggesting that the expressed EG
III mainly formed an inclusion body without enzyme activity, and the
slight amount of the soluble enzyme revealed endoglucanase activity as
mentioned above. The EG IIIs in both the supernatant and the cell
debris of the 105-AG-egl3 cell lysate had the same molecular size as
that of the native enzyme.
 |
DISCUSSION |
In this paper we report the sequence and analysis of cDNA and
genomic clones encoding low-molecular-mass EG III from T. reesei. For the cloning of egl3 cDNA by the method of
PCR, N-terminal and C-terminal sequences of the protein were predicted
from the similarity of the deduced sequence from the genomic
egl3 gene to that of F1-CMCase from A. aculeatus (17). This prediction was consequently judged
to be right after a determination of the amino acid sequence of EG III.
The EG III protein sequence was identical to that of the small, high-pI
endoglucanase reported by Ward et al. (36). EG III showed
significant protein sequence homology with family H cellulases. When
those sequences are aligned with EG III, structural homologies are
evident, especially at certain conserved domains (Fig. 4). In addition,
when the hydropathy profiles are compared, a clear pattern is conserved
among these four endoglucanase enzymes (data not shown). Moreover, the
putative catalytic site in F1-CMCase (13) is conserved
in all these proteins, including EG III (Glu132 and
Glu216 in Fig. 4). Hydrophobic amino acids with an aromatic
side chain, especially tryptophans, are highly conserved throughout the
overall sequence. The importance of their existence is not clear, but they may play a role in substrate recognition, as can be seen in the
CBD of CBH I, which stacks with cellulose through the three conserved
tyrosines (22). Most of the fungus cellulases studied thus
far have the CBD, whereas the family H cellulases containing EG III do
not. In our previous report we showed that purified EG III does not
adhere to microcrystalline cellulose (Avicel), although the purified
CBH I almost attached to the cellulose under those experimental
conditions. From these results, EG III is shown to be the first enzyme
without the CBD and the linker region among T. reesei
cellulases. EG III was also induced by cellulose, as shown in Fig. 5B,
possibly in harmony with other cellulases of T. reesei.
It was demonstrated in our previous report that EG III synergistically
degrades Avicel with T. reesei CBH I. These results
suggest that EG III, a cellulase without a CBD, may play an important
role in crystalline cellulose degradation by T. reesei. To determine whether the egl3 gene has an essential role in
cellulose digestion will require testing of T. reesei
with a genetic disruption in egl3. Furthermore, construction
of the fusion enzymes by addition of the CBD to EG III will open an
alternative way to elucidate the function of the CBD in cellulose
degradation.
To study the enzymatic characteristics of EG III without other
cellulase activity, we have attempted to produce the recombinant EG III
in the heterologous, cellulase-nonproducing hosts S. cerevisiae, Schizosaccharomyces pombe, and E. coli. The yeast transformants secreted EG III enzymes in a
catalytically active form, but the molecular masses were larger than
that of the native enzyme from T. reesei. The enzymatic
removal of the carbohydrate moieties demonstrated that the secreted
enzymes were glycosylated. Treatment of the enzymes from S. cerevisiae and Schizosaccharomyces pombe with endo H
reduced the molecular masses of a portion of the enzyme molecules to
the molecular mass of the T. reesei enzyme, indicating that glycosylation might occur at least partly in the N-linked type.
The low hydrolytic activity of endo H on the recombinant enzymes may
thus be due to its substrate specificity for the high-mannose-type N-glycans of higher eukaryotes. It also cannot be ruled out that heterogeneous glycosylation took place in each yeast. The
resistance of EG III glycans in Schizosaccharomyces pombe to
-mannosidase in contrast to the lack of resistance of EG III glycans
in S. cerevisiae to
-mannosidase may be due to addition
of galactose to the end of the oligomannosaccharide chains, which
frequently occurs in Schizosaccharomyces pombe
(11, 28). As shown in Fig. 7, S. cerevisiae SC-adh-egl3 and Schizosaccharomyces pombe SP-cmv-egl3 secreted 17 and 400 mU of endoglucanase activity per ml of culture medium, respectively, and these activities were estimated
to represent 1.5 and 36 µg of the secreted protein per ml,
respectively, on the basis of the specific activity of 11.2 µmol/min/mg of the purified enzyme from T. reesei
(12). The amounts of EG IIIs secreted were rather less than
those of CBH IIs in yeasts (14, 21). However, there is still
much room for improvement in these systems, for example, the
substitution of the EG III signal sequence for another sequence
promising higher efficiencies of secretion in the respective yeasts of
mating factor
, yeast killer toxin, or other T. reesei cellulases such as CBH II.
Although expression of the mature EG III in E. coli resulted
mostly in the formation of enzymatically inactive inclusion bodies, a
significant amount of the soluble, active enzyme was produced in the
presence of IPTG (Fig. 7C). This study provides the first example
showing that a T. reesei cellulase gene can be
expressed in an active form as a mature enzyme without fusion in
E. coli (10). Furthermore, we have succeeded in
the recovery of the active form from the inclusion body by simple
treatments (unpublished result).
At present the Schizosaccharomyces pombe expression system
seems to be suitable for expressing fusion proteins such as EG III
fused with the CBD. On the other hand, the E. coli system appears to be suited to the study of the catalytic function of EG III
by site-directed mutagenesis. Further research in our laboratory will
be directed toward studies of the contribution of EG III to crystalline
cellulose degradation and its structure-function relationship.
 |
ACKNOWLEDGMENTS |
This work was partly supported by a grant-in-aid for scientific
research from the Ministry of Education, Science, Sports, and Culture
of Japan and a research grant from the Sapporo Bioscience Foundation.
We thank H. Watanabe for a critical reading of the manuscript.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Bioengineering, Nagaoka University of Technology, 1603-1 Kamitomioka, Nagaoka, Niigata 940-21, Japan. Phone: 81 (258) 479407. Fax: 81 (258)
479400. E-mail: yasushi{at}vos.nagaokaut.ac.jp.
 |
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