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Appl Environ Microbiol, May 1998, p. 1736-1742, Vol. 64, No. 5
0099-2240/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
A Mixed Culture Recovery Method Indicates that
Enteric Bacteria Do Not Enter the Viable but Nonculturable
State
Gregg
Bogosian,*
Patricia J. L.
Morris, and
Julia P.
O'Neil
Agricultural Sector, Monsanto Company,
Chesterfield, Missouri 63198
Received 29 December 1997/Accepted 9 March 1998
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ABSTRACT |
A new method, called the mixed culture recovery (MCR) method, has
been developed to determine whether recovery of culturable bacterial
cells from a population of largely nonculturable cells is due to
resuscitation of the nonculturable cells from a viable but
nonculturable state or simply to growth of residual culturable cells.
The MCR method addresses this issue in that it involves the mixing of
two easily distinguishable strains (e.g., lactose positive and
negative) in such a way that large numbers of nonculturable cells of
both strains are present together with a small number of culturable
cells of only one strain, performing a nutrient addition resuscitation
procedure, and then plating the cells to determine whether both cell
types are recoverable. In repeated experiments with strains of
Escherichia coli, Klebsiella pneumoniae, Enterococcus faecalis, Enterobacter aerogenes,
and Salmonella choleraesuis, only cells of the culturable
strain were recovered after application of various resuscitation
techniques. These results suggest that the nonculturable cells were
dead and that the apparent resuscitation was merely due to the growth
of the remaining culturable cells.
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INTRODUCTION |
Numerous studies have shown that
bacteria which are normally culturable form large populations of
nonculturable cells when subjected to prolonged incubation in sterile
soil or water (4, 30). This phenomenon has been most
intensively studied with cells of Escherichia coli in
sterile freshwater or sterile seawater, where it has been observed that
as the number of culturable cells declines (as determined by plate
counts), the total number of cells present remains unchanged (as
determined by a direct count method) (4, 6-8, 10, 13, 16-19, 21,
27, 29, 31, 35, 36). While one possible explanation for these
results is that the nonculturable cells are dead (4), there
has been advanced the alternative explanation that the nonculturable
cells have entered a state in which they are still viable but cannot be
cultured by standard microbiological methods (3, 9, 30); the
cells are said to be in the viable but nonculturable (VBNC) state. The
VBNC hypothesis has been the subject of much interest and debate,
especially since it has formed the basis of questions about the
potential threat of bacteria which cannot be detected by standard
microbiological testing methods to public health (3, 4, 9,
30). Significantly, there has not been any indication that
standard bacteriological methods are inadequate.
Recovery of culturable cells from a population of nonculturable cells
would provide convincing support for the VBNC hypothesis. The
appearance of large numbers of culturable cells after the addition of
nutrients to populations of nonculturable cells has been reported to
occur via a process termed resuscitation (23, 30). However,
such recovery studies can be confounded by the presence of a low level
of culturable cells, which can grow in response to the addition of
nutrients and give the illusion of resuscitation. Carefully performed
nutrient addition experiments with purely nonculturable populations of
E. coli cells indicated that no culturable cells were
recovered (4). One possible explanation for this result is
that nonculturable cells of E. coli are dead. However, it
has also been suggested that the presence of culturable cells is
required for recovery of nonculturable cells, perhaps due to the
production by culturable cells of a resuscitation-inducing factor that
triggers resuscitation of nonculturable cells (25, 33, 38).
This possibility could not be confirmed or ruled out by studies that
employed pure cultures, since it was not possible to determine whether
the additional culturable cells were new cells or resuscitated
nonculturable cells.
This question has been addressed in the present study through the
development of a simple technique termed the mixed culture recovery
(MCR) method, in which mixtures of easily distinguishable culturable
and nonculturable cells are used to determine whether only culturable
cells or both culturable and nonculturable cells have responded to
various resuscitation techniques.
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MATERIALS AND METHODS |
Bacterial strains and preparation of inocula.
The strains of
enteric bacteria chosen for this study have all been reported to enter
the VBNC state (30). Pairs of these strains that were easily
distinguishable on carbohydrate indicator media were identified. For
E. coli, the pair of strains consisted of the standard
prototrophic wild-type E. coli K-12 strain W3110 (2), which is lactose positive, and a lactose-negative
derivative of this strain (with the lac operon deleted)
constructed for this work, designated LBB329. The other pairs of
strains, obtained from the American Type Culture Collection (Rockville,
Md.), consisted of Klebsiella pneumoniae ATCC 211 and ATCC
132 (dulcitol positive and negative, respectively), Enterococcus
faecalis ATCC 12953 and ATCC 10741 (inositol positive and
negative, respectively), Enterobacter aerogenes ATCC 49469 and ATCC 43175 (dulcitol positive and negative, respectively), and
Salmonella choleraesuis subspecies choleraesuis
serotype typhimurium ATCC 13311 and ATCC 25376 (cellobiose positive and
negative, respectively). Fresh cultures of the strains that had been
grown for 14 h at 37°C in Luria-Bertani (LB) medium were washed
with sterile 0.9% saline, adjusted to the desired cell concentration,
and added to the water microcosms in 10-ml inocula. Each microcosm had
an initial population of 3 × 108 CFU per ml.
Media and chemicals.
Tryptone, yeast extract, brain heart
infusion (BHI) medium, Bacto Peptone, Bacto Proteose Peptone, lactose,
and Bacto Agar were obtained from Difco Laboratories (Detroit, Mich.).
Nalidixic acid, inositol, dulcitol, cellobiose, acridine orange,
2-(p-iodophenyl)-3-(p-nitrophenyl)-5-phenyltetrazolium chloride (INT), and neutral red were obtained from Sigma Chemical Co.
(St. Louis, Mo.). LB medium (34) was used to grow the
strains; LB agar is LB medium with 15 g of Bacto Agar per liter.
Neutral red plates consisted of 17 g of Bacto Peptone, 3 g of
Bacto Proteose Peptone, 5 g of sodium chloride, 0.03 g of
neutral red, and 10 g of the desired carbohydrate per liter of
distilled water; before autoclaving, the pH of the medium was adjusted
to 7.1.
Water microcosms.
Artificial seawater was prepared with
Instant Ocean (Aquarium Systems, Mentor, Ohio) at a concentration of
3.5% in distilled water. One-liter aliquots of water were placed into
2-liter Erlenmeyer flasks; the flasks were capped with foam plugs and
paper covers and autoclaved for 45 min. After inoculation, the flasks
were incubated at 20°C.
Colony and cell counting.
Samples were removed directly from
the water microcosms and diluted in sterile 0.9% saline for subsequent
cell counting. Plate counts were performed by plating 0.1-ml samples in
duplicate on LB agar and incubating the plates at 37°C for 72 h
prior to colony counting. All of the colonies on plates containing less
than 300 colonies were added up, and the total was divided by the total volume plated to estimate the CFU per ml. Acridine orange direct counts
(AODC) were achieved by the method of Hobbie et al. (22), using a 0.9% saline diluent and staining with 0.01% acridine orange at room temperature for 15 min; this indicated the total number of
cells per milliliter, regardless of whether they were able to grow into
visible colonies. Direct viable counts (DVC) were obtained by the
method of Kogure et al. (26), with incubation of the samples
in 0.025% yeast extract and 0.002% nalidixic acid at room temperature
overnight prior to acridine orange staining. Cells which were elongated
to at least twice the length of AODC controls were scored as viable.
The diluent was Vogel-Bonner minimal medium (37). The INT
reduction technique of Quinn (32) was also used as a
viable-count method. As a third viable-count method, the Live/Dead kit
of Molecular Probes, Inc. (Eugene, Oreg.) was employed in accordance
with the instructions supplied by the company; this kit utilizes a
mixture of the stains SYTO 9 and propidium iodide (PI) to evaluate cell
membrane integrity. A Nikon Optiphot fluorescent microscope with an
HBO-100 light source was used for the examination of the preparations
at a magnification of ×1,000.
Preparation of the MCR inocula.
The plate count results were
used to mix and dilute samples from each pair of microcosms in such a
manner as to yield a sample with about one culturable cell of either
strain per milliliter. Inocula of 0.3 ml from these diluted samples
were added to each of 10 10-ml tubes of LB medium; thus, about 3 of the
10 tubes would have received one culturable cell of either strain, and the other tubes would have received zero culturable cells. When the
number of culturable cells had fallen below 1 CFU per ml (Fig. 1), samples were prepared with about 1 CFU per 10 ml, and 3-ml inocula were added to each of 10 100-ml flasks
of LB medium; thus, about 3 of the 10 flasks would have received one
culturable cell.

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FIG. 1.
Decline in numbers of enteric bacteria in sterile
seawater at 20°C. Shown are counts of CFU per milliliter of seawater
for S. choleraesuis ( ), E. aerogenes ( ),
and E. coli ( ). The plots for K. pneumoniae
and E. faecalis were very similar to that for E. coli and therefore are not shown. Each point is the mean of values
from duplicate microcosms. In each case, the standard error was
approximately 12%.
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When only culturable cells of either strain were present at the
beginning of the study, they were the only cells added to
the LB medium
tubes. As the study progressed and populations of
nonculturable cells
developed to increasing degrees, the inocula
contained increasingly
larger numbers of such cells. The number
of nonculturable cells added
to each tube was calculated by dividing
the total number of cells
present by the number of culturable
cells at that time point and then
multiplying that ratio by the
inoculum volume. For example, on day 147, the number of culturable
E. coli cells had fallen to about
1,900 CFU per ml (Fig.
1). With
the total number of cells per
milliliter (nonculturable plus culturable),
as determined by AODC,
being 3 × 10
8 and the inoculum volume being 0.3 ml,
the number of nonculturable
cells added to each tube was calculated to
be (3 × 10
8 total cells

1,900 CFU per
ml/1,900 CFU per ml) (0.3 ml), or
47,000 nonculturable cells. This
value, calculated at each time
point, is reported in Table
1.
For those time points at which both of the strains of each pair had
essentially the same CFU per milliliter, equal volumes
of each
microcosm were mixed and thus about equal numbers of nonculturable
cells of each strain were added to each tube. When the
CFU-per-milliliter
values were not the same, different volumes were
mixed to yield
a suspension with equal CFU per milliliter of both
strains. This
yielded mixtures for which the ratio of nonculturable
cells was
the inverse of the initial ratio of culturable cells. For
example,
on day 98, the lactose-positive
E. coli had fallen
to about 3.5
× 10
4 CFU per ml and the
lactose-negative
E. coli had fallen to about
1.2 × 10
4 CFU per ml, a ratio of about 3:1 (this was the largest
difference
exhibited in the culturable cell counts in any of the
studies).
The initial mixture was prepared with 1 ml from the
lactose-positive
microcosm and 3 ml from the lactose-negative
microcosm. This mixture
had about 1.8 × 10
4 CFU per
ml, with equal CFU of lactose-positive cells and lactose-negative
cells. It was diluted 1.8 × 10
4-fold to yield a
suspension with about 1 CFU per ml, which was
used to inoculate the LB
medium tubes. Calculated in the same
manner as above, each 0.3-ml
inoculum contained about 5,000 nonculturable
cells; since the initial
mixture was made in a 1:3 ratio, these
5,000 nonculturable cells
consisted of about 1,300 lactose-positive
cells and about 3,700 lactose-negative cells.
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RESULTS |
Decline of enteric bacteria levels in sterile seawater.
In a
previous study, it was shown that strains of E. coli
gradually became nonculturable during prolonged incubation in sterile river water or sterile seawater at 37°C or in sterile seawater at
20°C but exhibited no such decline at lower temperatures or in
sterile soil (4). These studies were extended to the other enteric bacteria used in this work, and the same pattern was observed. Seawater or river water at 37°C was felt to be a condition not likely
to be encountered in real environments. Therefore, the microcosm chosen
for the present study was sterile seawater at 20°C. The pairs of
strains of E. coli, K. pneumoniae, E. faecalis, E. aerogenes, and S. choleraesuis
were each incubated separately in the sterile seawater, with the
initial cell concentration being about 3 × 108 CFU
per ml in all cases.
Five different methods were used to monitor the bacterial cells in the
seawater microcosms: plate counts on LB agar, AODC,
DVC, INT reduction,
and SYTO 9-PI staining. As measured by AODC,
the number of bacterial
cells remained constant at the initial
level, but the plate counts
gradually declined (Fig.
1). The DVC
paralleled the plate counts. With
the SYTO 9-PI staining technique,
the cells stained fluorescent green
over the entire course of
the studies, indicative of cell membrane
integrity (
28). At
the outset of the studies (up to day 28)
with the
E. coli and
E. aerogenes cells, the INT
counts were approximately the same
as the plate counts and the DVC.
However, at the later time points,
the INT counts of these cells were
lower than the plate counts
or DVC. In contrast, for the
E. faecalis,
K. pneumoniae, and
S. choleraesuis
cells, the INT counts remained constant at the initial
level (i.e., the
same as the AODC).
Outline of the MCR method.
The objective of the MCR method is
to determine whether recovery of culturable bacterial cells from a
population of largely nonculturable cells is due to resuscitation of
the nonculturable cells from a VBNC state or is simply due to the
presence of residual culturable cells. Utilization of a pair of easily
distinguishable bacterial strains is the central feature of the MCR
method. For example, a mixed population consisting of large numbers of
nonculturable lactose-negative and lactose-positive E. coli
cells and also containing one or a few culturable lactose-negative
E. coli cells but no culturable lactose-positive E. coli cells is obtained and subjected to a nutrient addition
recovery protocol followed by plating on lactose indicator plates. If
the only response of the mixture of cells is growth of the few
culturable lactose-negative cells, then only lactose-negative colonies
will be obtained. If some of the nonculturable cells (which include
both lactose-positive and lactose-negative cells) have been
resuscitated, then both lactose-positive and lactose-negative colonies
will be obtained.
Response of the MCR inocula to nutrient addition.
The cultures
were subjected to a nutrient addition MCR test at various time points
during the course of the study by inoculation into tubes of LB medium
(Table 1). The preparation of the MCR inocula is described in Materials
and Methods. The sets of 10 inoculated tubes were incubated at 37°C
for 48 h on a platform shaker at 300 rpm prior to being scored for
growth. In every case throughout the study the result was unambiguous,
with the tube contents showing either full-density growth or no growth
at all. For the tube cultures which did show growth, the final
densities ranged from about 6 × 108 cells per ml for
the E. faecalis cultures to about 2 × 109
cells per ml for the other strains. To score the tube cultures showing
growth, they were diluted and plated on neutral red plates supplemented
with the appropriate carbohydrate. In addition, samples from two tube
cultures that did not show growth were also plated to check for growth;
in no case were colonies ever obtained from the contents of these
tubes. For the tube cultures showing growth, the plating tests were
also unambiguous, with most (102 of 108) of the cultures being composed
of either pure carbohydrate-negative or pure carbohydrate-positive cell
types and an occasional (6 of 108) culture being composed of roughly a
50:50 mixture of positive and negative cell types (Table 1). Toward the
end of the study (beyond day 147), the LB medium tube cultures were
somewhat turbid right after inoculation due to the large numbers of
nonculturable cells that were added. There was still a clear difference
between this initial turbidity and that of tube cultures which showed full-density growth; nevertheless, at these later time points, samples
from all 10 tubes were plated to check for growth and examined by AODC
to see if any increase in cell number had occurred. In every case for
these tube cultures that showed no growth, no colonies were obtained
and the number of cells initially inoculated was the same as that found
after the 48-h incubation.
To test whether the LB medium was too dilute or too rich for
resuscitation to occur, additional sets of tubes of other media
were
used on days 49 and 147 of studies. A richer medium (BHI)
was employed,
as well as a 4% LB medium and a 20% LB medium. The
MCR results (Table
2) exhibited essentially the same pattern
as those obtained with the LB medium.
The effects of shifting the temperature prior to performing the MCR
procedure were tested on days 98 and 196 of the studies.
Samples from
the microcosms were placed at 4 and 37°C for 24 h
prior to the
performance of the MCR test. For most of the samples,
the temperature
shifts had no effect on the MCR result (Table
3). However, after samples of the
E. aerogenes microcosms had
been held at 37°C, the
contents of all 10 of the tubes in the
subsequent MCR test exhibited
growth. The resulting cultures all
contained roughly a 50:50 mixture of
dulcitol-positive and dulcitol-negative
cells. It was observed
microscopically that clumps of cells had
formed in the
E. aerogenes microcosms, each composed of several
hundred cells (Fig.
2). These clumps were not observed after
the
24-h incubation at 37°C, suggesting that clump dispersion was
the
cause of the increases in CFU counts. To test this idea, two
additional
tests were performed on samples from the
E. aerogenes microcosms at day 98. First, microcosm samples were shifted to
37°C
and monitored by hourly plate counts; the CFU-per-milliliter
values
were found to increase about 200-fold in a 4-h time span,
starting
about 8 h after the temperature shift. Complete dispersion
of the
cell clumps was also observed during this time period.
After adjusting
for this increased number of CFU, another MCR
test was performed; this
resulted in growth of unmixed cultures
in 3 of the 10 tubes (one
dulcitol positive and two dulcitol negative).
Second, samples of the
E. aerogenes microcosms were diluted (prior
to the
temperature shift) to about 1 CFU per ml, and 0.3-ml aliquots
were
placed in small capped tubes. These diluted samples were
incubated at
37°C for 24 h, and then used as inocula in an MCR
test; the
result was unmixed growth in 4 of the 10 tube cultures
(two dulcitol
positive and two dulcitol negative).

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FIG. 2.
Bright-field light microscope image of a clump of
E. aerogenes cells, formed after 98 days in seawater at
20°C. An Olympus AX-70 microscope was used in combination with a 60×
oil objective lens. Bar, 5 µm.
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Growth characteristics of the LB medium cultures.
The doubling
times of the strains in LB medium were determined by hourly plate
counts, both with fresh cultures and with microcosm samples, on days
49, 147, and 196. The age of the culture did not affect the doubling
time, and both strains in each pair exhibited the same growth rate. The
doubling times were 18 min for the E. coli strains, 38 min
for the K. pneumoniae strains, 65 min for the E. faecalis strains, 36 min for the E. aerogenes strains, and 32 min for the S. choleraesuis strains. These
measurements were repeated with 50:50 and 90:10 mixtures of each pair
of strains, and in every case these ratios were maintained over the
entire course of the growth curve.
Limit of detection on neutral red indicator medium.
The
sensitivity of the indicator plate tests was addressed by performing
spike-recovery plating experiments on the neutral red indicator medium.
A small number of cells (5 to 10) of one carbohydrate phenotype were
mixed with a wide range of much larger numbers of cells (from
104 to 108) of the other carbohydrate
phenotype. When the carbohydrate-positive cells were the minority, it
was very easy to distinguish the resulting positive colonies or
papillae against a background lawn of negative colonies. Thus, the
limit of detection was at least one positive cell in 108
negative cells. When the carbohydrate-negative cells were the minority,
very large numbers of positive colonies tended to obscure the negative
colonies, yielding a limit of detection of one negative cell in
105 positive cells. Additional platings performed with
unspiked samples yielded pure colonies or lawns, indicating that the
strains used in this study were genetically stable.
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DISCUSSION |
Strains of the enteric bacteria E. coli, K. pneumoniae, E. faecalis, E. aerogenes, and
S. choleraesuis, inoculated at high levels into sterile
seawater at 20°C and monitored for nearly 300 days, displayed
declining plate counts and accumulation of large numbers of
nonculturable cells. The total cell counts as determined by AODC
remained constant at the initial level, while plate counts indicated
that the number of viable and culturable cells dropped to less than 1 CFU per ml in about 300 days (Fig. 1). The DVC results were consistent
with the plate counts when those cells which had elongated to at least
twice the length of AODC controls were counted as positive. However,
all of the other cells in the DVC samples exhibited a slight increase
in size due to swelling. Viable-cell counts performed by the INT
reduction technique were not consistent with the plate counts or DVC
results; even lower viable-cell counts were obtained by INT reduction
for the strains of E. coli and E. aerogenes,
while those for the strains of E. faecalis, K. pneumoniae, and S. choleraesuis remained constant at
their initial levels. Furthermore, with the SYTO 9-PI staining technique, all of the cells of every strain remained fluorescent green,
indicating that the cells retained an intact, undamaged membrane
(28). Positive INT reduction results, swollen cells in DVC
samples, and positive AODC and SYTO 9-PI staining results have been
interpreted in other studies as an indication that nonculturable cells
were still viable and thus in the VBNC state (3, 30).
It has been reported by others that temperature shifts or nutrient
addition can resuscitate nonculturable bacteria (23, 30).
However, samples of microcosms in this study, prepared so as to contain
only nonculturable cells, did not yield any culturable cells after
either a temperature shift or a nutrient addition. This observation is
consistent with earlier results obtained with strains of E. coli (4). It has also been suggested that the presence
of culturable cells is required for the resuscitation of nonculturable
cells (25, 33, 38). This possibility was addressed by the
development of the MCR method.
The MCR nutrient addition tests were designed such that zero culturable
cells would be placed into each of about 7 of 10 tubes of LB medium and
one culturable cell would be placed into each of about 3 of those 10 tubes. The number of nonculturable cells added to each tube increased
over the course of this study, so that a very broad range of ratios of
nonculturable to culturable cells was tested (Table 1). However, there
was a small chance that a tube could receive two culturable cells and
an even smaller chance of it receiving more than two culturable cells.
The predicted frequencies of these occurrences are given by Poisson's
law, which states that the probability of a tube receiving k
cells (where k = 0, 1, 2, or >2) is equal to
[(e
t)(tk)]/k!,
where t equals the fraction of 1 ml used as the inoculum. Solving this equation for t = 0.3 (the volume used in
this study), the probability of a tube receiving zero cells is 0.74, the probability of it receiving one cell is 0.22, the probability of it
receiving two cells is 0.033, and the probability of the tube receiving more than two cells is 0.0036. It must also be kept in mind that half
of the time a tube receiving two cells will receive two cells of the
same type; thus, the probability of it receiving two different types of
cells is 0.017. Setting aside for the moment the two E. aerogenes MCR tests that yielded only mixed cultures (discussed below), the data in Tables 1 to 3 represent the growth results for 870 tubes. It would be predicted that about 74% of these tubes would have
received zero culturable cells; the actual result was very close to
this value, with about 73% (637) of the tube cultures not showing any
growth (Tables 1 to 3). It would also be predicted that almost 2% of
the 870 tubes (about 17 tubes) would have received two or more cells of
different types and yielded a mixed culture. Again, the actual result
was very close to this value, with mixed cultures observed in 13 tubes
(Tables 1 to 3).
One conclusion that can be drawn from the MCR results is that the tubes
containing only nonculturable cells yielded no culturable cells and
that the tubes containing both nonculturable cells and culturable cells
yielded only culturable cells derived from those initial culturable
cells; this interpretation would also suggest that the culturable cells
were not capable of resuscitating the nonculturable cells. There were,
however, 13 mixed cultures obtained during this study which could be
interpreted as providing evidence of resuscitation of nonculturable
cells. An alternative explanation for these 13 mixed cultures is that
they were derived from an initial inoculum of two culturable cells of
different types. This latter explanation is more consistent with all of
the results, since these tubes arose at the frequency expected for such
an event and were comprised of a 50:50 mixture of both cell types, and
two had developed at the start of the study, when nonculturable cells
were not present.
It was observed that the members of pairs of strains used in this study
both grew at about the same rate in the LB medium, including in mixed
culture, making it unlikely that one strain had overwhelmed the other
during the MCR growth period. Furthermore, even if some of the MCR
samples had experienced unbalanced growth, the spike-recovery tests
indicated that the plating method was sensitive enough to detect small
minority populations. Other media were tested as well and had no effect
on the MCR results (Table 2).
Temperature shifts were also used in an attempt to resuscitate the
nonculturable cells. With one exception, the temperature shifts had no
effect on the cells (Table 3). The exception was observed during
warming of the E. aerogenes microcosms, which resulted in a
200-fold increase in the population of culturable cells over a 4-h
period. This rapid increase, equivalent to a doubling time of 31 min,
occurred in seawater with no carbon source and with strains whose a
doubling time in LB medium was 36 min; clearly, growth of culturable
cells was not the cause of the increased numbers of culturable cells.
This result is consistent with the VBNC hypothesis of resuscitation of
nonculturable cells. It was also observed that these microcosms
contained clumps of cells which were dispersed when warmed to 37°C.
This observation suggested an alternative explanation: namely, that the
dispersion of the clumps was responsible for the increase in number of
culturable cells. Dispersion of many culturable cells from a clump of
cells could give the illusion of resuscitation of nonculturable cells during an MCR procedure. Using CFU-per-milliliter values from the
untreated microcosms to calculate the dilution factor to reach 1 CFU
per ml for the MCR inocula without being aware of the increased culturable cell count in the warmed samples would actually result in
MCR inocula containing hundreds of culturable cells of both strain
types. Indeed, the MCR tubes inoculated from the warmed and diluted
samples all exhibited growth of mixed cultures. Two additional
experiments, however, provided support for the idea that dispersion of
cells from clumps was responsible for the increase in culturable cell
counts. Performing the MCR tests after taking into account the
increased culturable cell count, or preparing the MCR inocula before
the warming step, yielded growth of unmixed cultures in 3 or 4 of each
set of 10 tubes. These results suggest that the clumps of E. aerogenes cells contained hundreds of culturable cells which were
dispersed by warming, rapidly turning each clump from 1 CFU into
hundreds of CFU. In other studies with E. coli, Micrococcus luteus, and Vibrio vulnificus, the
appearance of additional culturable cells at rates exceeding the growth
rate has been interpreted as indicating resuscitation of VBNC cells
(12, 24, 39). The formation and dispersion of clumps of
culturable cells should be considered in such studies.
There has not been a rigorous demonstration that the cell staining
techniques used in this study, which play such a crucial role in VBNC
experiments, can discriminate between viable and nonviable cells. Some
cell staining results of the type obtained in the present work have
been interpreted by others to indicate that nonculturable cells were
still viable and thus in the VBNC state. However, the fact that
nonculturable cells may stain the same as culturable cells does not
mean that they are alive; what is needed is some kind of independent
confirmation of cell viability which demonstrates that the cells meet a
definition of cell viability such as the "ability of a single cell to
attain a population discernible by the observer" (5).
Workers in the VBNC field have addressed this key question by
experimenting with various resuscitation techniques in an attempt to
return nonculturable cells to a state in which they do exhibit
discernible population increases. The techniques that have been
reported to resuscitate nonculturable cells are nutrient addition,
temperature shifts, and nutrient addition in the presence of culturable
cells (23, 25, 30, 33, 38). As demonstrated by the results
presented in this study, great care must be taken to avoid being misled
by the illusion of resuscitation. For example, when performing a
resuscitation experiment on nonculturable cells in the presence of
culturable cells, one obvious issue which can confound the results is
whether the discernible population increases are merely due to the
response of the culturable cells to the resuscitation manipulation. In addition, in a report on a study with V. vulnificus,
Whitesides and Oliver (39) suggested that nutrients in
full-strength media may inhibit the resuscitation of nonculturable
cells and that a resuscitation method such as temperature shifting or
the use of dilute media may give better results. Finally, as reported here, the dispersion of clumps containing many culturable cells can
give the illusion of resuscitation of nonculturable cells.
With these issues in mind, a variety of types of resuscitation methods
were examined in the studies presented here, including nutrient
addition with rich or dilute media, temperature shifts, and temperature
shifts plus nutrient addition; these resuscitation techniques were
performed on a wide range of numbers of nonculturable cells, both in
the presence and in the absence of culturable cells. While the
occasional mixed MCR culture tube and the response of the E. aerogenes cultures to a temperature upshift were suggestive of
resuscitation of nonculturable cells, such an interpretation did not
hold up under closer scrutiny, as discussed above. An alternative
interpretation of the results presented here is that addition of
nutrients to a mixture consisting of many nonculturable cells and a few
culturable cells had no effect other than enabling the residual
culturable cells to grow and that subjecting these cell mixtures to
temperature shifts had no effect other than dispersion of clumps of
cells. The VBNC hypothesis could be extended to argue that a means to
resuscitate these nonculturable cells is not known, but such a position
cannot be addressed by any finite experiment. A conclusion that is
consistent with all of the experimental results presented here is that
the nonculturable cells were dead.
For the enteric bacteria studied here for nearly 300 days in seawater,
the AODC results indicated that no cells had been lost through lysis or
by other means. The SYTO 9-PI results suggested that the cells had
intact, undamaged membranes. The cellular swelling seen in the DVC
samples, as well as the continued reduction of INT in some of the
strains, suggested that the cells had residual metabolic activity. How
could dead bacterial cells exhibit such staining results? Other studies
of bacteria during prolonged starvation have indicated that processes
such as ribosome degradation (11, 14), loss of chromosomal
DNA (15), and programmed cell death (1, 40) cause
a gradual decline in essential cellular capabilities, eventually
leading to the death of the cell. Perhaps cells which die in such a
gradual manner, in a laboratory microcosm free of predators, persist as
"bags of enzymes" (20), stable for long periods under
the study conditions employed and retaining some enzymatic activity. It
is possible that this was the nature of the dead nonculturable cells
observed in these studies.
 |
ACKNOWLEDGMENTS |
We thank Richard L. Ornberg for preparing the light microscope
image; Shirley A. Landon and Michele VanBoxlaere of the American Type
Culture Collection for identifying suitable pairs of enteric bacteria;
Wesley E. Workman, Michael A. Heitkamp, and Gary M. Bond for critically
reading the manuscript; and Rita R. Colwell and James D. Oliver for
helpful discussions.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Monsanto BB3M,
700 Chesterfield Village Parkway, Chesterfield, MO 63198. Phone: (314) 737-6149. Fax: (314) 737-7002. E-mail:
gregg.bogosian{at}monsanto.com.
 |
REFERENCES |
| 1.
|
Aizenman, E.,
H. Engelberg-Kulka, and G. Glaser.
1996.
An Escherichia coli chromosomal "addiction module" regulated by 3',5'-bispyrophosphate: a model for programmed bacterial cell death.
Proc. Natl. Acad. Sci. USA
93:6059-6063[Abstract/Free Full Text].
|
| 2.
|
Bachmann, B. J.
1987.
Derivations and genotypes of some mutant derivatives of Escherichia coli K-12, p. 1190-1219.
In
F. C. Neidhardt, J. L. Ingraham, K. B. Low, B. Magasanik, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella typhimurium: cellular and molecular biology. American Society for Microbiology, Washington, D.C.
|
| 3.
|
Barer, M. R.,
L. T. Gribbon,
C. R. Harwood, and C. E. Nwoguh.
1993.
The viable but nonculturable hypothesis and medical bacteriology.
Rev. Med. Microbiol.
4:183-191.
|
| 4.
|
Bogosian, G.,
L. E. Sammons,
P. J. L. Morris,
J. P. O'Neil,
M. A. Heitkamp, and D. B. Weber.
1996.
Death of the Escherichia coli K-12 strain W3110 in soil and water.
Appl. Environ. Microbiol.
62:4114-4120[Abstract].
|
| 5.
|
Button, D. K.,
F. Schut,
P. Quang,
R. Martin, and B. R. Robertson.
1993.
Viability and isolation of marine bacteria by dilution culture: theory, procedures, and initial results.
Appl. Environ. Microbiol.
59:881-891[Abstract/Free Full Text].
|
| 6.
|
Byrd, J. J., and R. R. Colwell.
1990.
Maintenance of plasmids pBR322 and pUC8 in nonculturable Escherichia coli in the marine environment.
Appl. Environ. Microbiol.
56:2104-2107[Abstract/Free Full Text].
|
| 7.
|
Byrd, J. J., and R. R. Colwell.
1993.
Long-term survival and plasmid maintenance of Escherichia coli in marine microcosms.
FEMS Microbiol. Ecol.
12:9-14.
|
| 8.
|
Caldwell, B. A.,
C. Ye,
R. P. Griffiths,
C. L. Moyer, and R. Y. Morita.
1989.
Plasmid expression and maintenance during long-term starvation-survival of bacteria in well water.
Appl. Environ. Microbiol.
55:1860-1864[Abstract/Free Full Text].
|
| 9.
|
Colwell, R. R.
1993.
Nonculturable but still viable and potentially pathogenic.
Zentbl. Bakteriol.
279:154-156.
|
| 10.
|
Davies, C. M.,
J. A. H. Long,
M. Donald, and N. I. Ashbolt.
1995.
Survival of fecal microorganisms in marine and freshwater sediments.
Appl. Environ. Microbiol.
61:1888-1896[Abstract].
|
| 11.
|
Davis, B. D.,
S. M. Luger, and P. C. Tai.
1986.
Role of ribosome degradation in the death of starved Escherichia coli cells.
J. Bacteriol.
166:439-445[Abstract/Free Full Text].
|
| 12.
|
Dukan, S.,
Y. Lévi, and D. Touati.
1997.
Recovery of culturability of an HOCl-stressed population of Escherichia coli after incubation in phosphate buffer: resuscitation or regrowth?
Appl. Environ. Microbiol.
63:4204-4209[Abstract].
|
| 13.
|
Duncan, S.,
L. A. Glover,
K. Killham, and J. I. Prosser.
1994.
Luminescence-based detection of activity of starved and viable but nonculturable bacteria.
Appl. Environ. Microbiol.
60:1308-1316[Abstract/Free Full Text].
|
| 14.
|
Eberl, L.,
M. Givskov,
L. K. Poulsen, and S. Molin.
1997.
Use of bioluminescence for monitoring the viability of individual Pseudomonas putida KT2442 cells.
FEMS Microbiol. Lett.
149:133-140.
|
| 15.
| Enroth, H., C. Pahlsson, and L. Engstrand. 1995. Do
viable but non-culturable coccoid forms of Helicobacter
pylori exist? Gastroenterology 108(Suppl.
4):A89.
|
| 16.
|
Fish, J. T., and G. W. Pettibone.
1995.
Influence of freshwater sediment on the survival of Escherichia coli and Salmonella sp. as measured by three methods of enumeration.
Lett. Appl. Microbiol.
20:277-281[Medline].
|
| 17.
|
Flint, K. P.
1987.
The long-term survival of Escherichia coli in river water.
J. Appl. Bacteriol.
63:261-270[Medline].
|
| 18.
|
Gauthier, M. J., and D. Le Rudulier.
1990.
Survival in seawater of Escherichia coli cells grown in marine sediments containing glycine betaine.
Appl. Environ. Microbiol.
56:2915-2918[Abstract/Free Full Text].
|
| 19.
|
González, J. M.,
J. Iriberri,
L. Egea, and I. Barcina.
1992.
Characterization of culturability, protistan grazing, and death of enteric bacteria in aquatic ecosystems.
Appl. Environ. Microbiol.
58:998-1004[Abstract/Free Full Text].
|
| 20.
|
Gribbon, L. T., and M. R. Barer.
1995.
Oxidative metabolism in nonculturable Helicobacter pylori and Vibrio vulnificus cells studied by substrate-enhanced tetrazolium reduction and digital image processing.
Appl. Environ. Microbiol.
61:3379-3384[Abstract].
|
| 21.
|
Grimes, D. J., and R. R. Colwell.
1986.
Viability and virulence of Escherichia coli suspended by membrane chamber in semitropical ocean water.
FEMS Microbiol. Lett.
34:161-165.
|
| 22.
|
Hobbie, J. E.,
R. J. Daley, and S. Jasper.
1977.
Use of Nuclepore filters for counting bacteria by fluorescence microscopy.
Appl. Environ. Microbiol.
33:1225-1228[Abstract/Free Full Text].
|
| 23.
|
Kaprelyants, A. S.,
J. C. Gottschal, and D. B. Kell.
1993.
Dormancy in non-sporulating bacteria.
FEMS Microbiol. Rev.
104:271-286.
|
| 24.
|
Kaprelyants, A. S., and D. B. Kell.
1993.
Dormancy in stationary-phase cultures of Micrococcus luteus: flow cytometric analysis of starvation and resuscitation.
Appl. Environ. Microbiol.
59:3187-3196[Abstract/Free Full Text].
|
| 25.
|
Kaprelyants, A. S.,
G. V. Mukamolova, and D. B. Kell.
1994.
Estimation of dormant Micrococcus luteus cells by penicillin lysis and by resuscitation in cell-free spent culture medium at high dilution.
FEMS Microbiol. Lett.
115:347-352.
|
| 26.
|
Kogure, K.,
U. Simidu, and N. Taga.
1979.
A tentative direct microscopic method for counting living marine bacteria.
Can. J. Microbiol.
25:415-420[Medline].
|
| 27.
|
Linder, K., and J. D. Oliver.
1989.
Membrane fatty acid and virulence changes in the viable but nonculturable state of Vibrio vulnificus.
Appl. Environ. Microbiol.
55:2837-2842[Abstract/Free Full Text].
|
| 28.
|
Lloyd, D., and A. J. Hayes.
1995.
Vigour, vitality and viability of microorganisms.
FEMS Microbiol. Lett.
133:1-7.
|
| 29.
|
McFeters, G. A., and S. I. Terzieva.
1991.
Survival of Escherichia coli and Yersinia enterocolitica in stream water: comparison of field and laboratory exposure.
Microb. Ecol.
22:65-74.
|
| 30.
|
Oliver, J. D.
1993.
Formation of viable but nonculturable cells, p. 239-272.
In
S. Kjelleberg (ed.), Starvation in bacteria. Plenum Press, New York, N.Y.
|
| 31.
|
Porter, J.,
C. Edwards, and R. W. Pickup.
1995.
Rapid assessment of physiological status in Escherichia coli using fluorescent probes.
J. Appl. Bacteriol.
79:399-408[Medline].
|
| 32.
|
Quinn, J. P.
1984.
The modification and evaluation of some cytochemical techniques for the enumeration of metabolically active heterotrophic bacteria in the aquatic environment.
J. Appl. Bacteriol.
57:51-57[Medline].
|
| 33.
|
Ravel, J.,
I. T. Knight,
C. E. Monahan,
R. T. Hill, and R. R. Colwell.
1995.
Temperature-induced recovery of Vibrio cholerae from the viable but nonculturable state: growth or resuscitation?
Microbiology
141:377-383[Abstract/Free Full Text].
|
| 34.
|
Sambrook, J.,
E. F. Fritsch, and T. Maniatis.
1989.
In
Molecular cloning: a laboratory manual, 2nd ed.
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
|
| 35.
|
Scheuerman, P. R.,
J. P. Schmidt, and M. Alexander.
1988.
Factors affecting the survival and growth of bacteria introduced into lake water.
Arch. Microbiol.
150:320-325[Medline].
|
| 36.
|
Smith, J. J.,
J. P. Howington, and G. A. McFeters.
1994.
Survival, physiological response, and recovery of enteric bacteria exposed to a polar marine environment.
Appl. Environ. Microbiol.
60:2977-2984[Abstract/Free Full Text].
|
| 37.
|
Vogel, H. J., and D. M. Bonner.
1956.
Acetylornithinase of Escherichia coli: partial purification and some properties.
J. Biol. Chem.
218:97-106[Free Full Text].
|
| 38.
|
Votyakova, T. V.,
A. S. Kaprelyants, and D. B. Kell.
1994.
Influence of viable cells on the resuscitation of dormant cells in Micrococcus luteus cultures held in an extended stationary phase: the population effect.
Appl. Environ. Microbiol.
60:3284-3291[Abstract/Free Full Text].
|
| 39.
|
Whitesides, M. D., and J. D. Oliver.
1997.
Resuscitation of Vibrio vulnificus from the viable but nonculturable state.
Appl. Environ. Microbiol.
63:1002-1005[Abstract].
|
| 40.
|
Yarmolinsky, M. B.
1995.
Programmed cell death in bacterial populations.
Science
267:836-837[Free Full Text].
|
Appl Environ Microbiol, May 1998, p. 1736-1742, Vol. 64, No. 5
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