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Appl Environ Microbiol, May 1998, p. 1910-1918, Vol. 64, No. 5
0099-2240/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Grazing Pressure by a Bacterivorous Flagellate
Reverses the Relative Abundance of Comamonas acidovorans
PX54 and Vibrio Strain CB5 in Chemostat
Cocultures
Martin W.
Hahn* and
Manfred G.
Höfle
GBF-National Research Center of
Biotechnology, AG Microbial Ecology, D-38124 Braunschweig, Germany
Received 1 December 1997/Accepted 9 March 1998
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ABSTRACT |
The response of the bacterial strains Comamonas
acidovorans PX54 (
subclass of the class
Proteobacteria) and Vibrio strain CB5 (
subclass of the class Proteobacteria) to grazing by the bacterivorous flagellate Ochromonas sp. was examined in
one-stage chemostat experiments under conditions of low growth rates
with a complex carbon source. The two bacterial strains were cultured together; they were cultured without flagellates in the first phase of
the experiments and in the presence of the flagellates in the second
phase. Monoclonal and polyclonal antibodies were used to determine the
numbers and sizes of C. acidovorans PX54 and
Vibrio strain CB5 cells. The flagellates caused strong
changes in total bacterial cell numbers, in the relative abundances of the individual bacterial strains, and in bacterial cell size
distribution. Vibrio strain CB5 dominated the total
bacterial cell numbers during the flagellate-free phase of the
experiments with a relative abundance of 93%, but this declined to
33% after inoculation with the flagellate. In contrast to
Vibrio strain CB5, C. acidovorans PX54
responded to grazing with a strong expansion of cell length
distribution toward large, filamentous cells. These changes in cell
morphology resulted in a high percentage of inedible cells in the
C. acidovorans PX54 population but not in the
Vibrio strain CB5 population, which caused the observed
change in the relative abundances of the strains. Batch culture
experiments without the flagellate demonstrated that the elongation of
C. acidovorans PX54 cells was dependent on their growth
rate. This indicates that the occurrence of filamentous C. acidovorans PX54 cells is not a direct response to chemical stimuli released by the flagellates but rather a response to increased growth rates due to flagellate grazing.
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INTRODUCTION |
Predator-prey interactions of
coexisting, free-living aquatic bacteria and bacterivorous protozoa
have coevolved for more than a billion years (28). This
enormous time span and the short generation times of both groups of
microorganisms should have resulted in a high degree of evolutionary
adaptation on both sides. Bacteria may have developed defense
strategies to prevent themselves from being ingested (preingestional
strategies) or digested (postingestional strategies) by their protozoan
predators, which, expectedly, adaptated to circumvent the bacterial
defense mechanisms. Information about the strategies involved in these
predator-prey interactions is scarce. Recently, Jürgens and
Güde (20) reviewed the strategies of bacteria and
stressed the lack of knowledge in this field.
Studies on size-selective ingestion (grazing) of bacterivorous protozoa
(6, 10, 25) indicate that very small and large bacteria are
partly or totally protected from protozoan grazing (12, 20).
This finding is supported by field and experimental observations
showing the occurrence and persistence of large bacterial filaments and
aggregates during times of high grazing pressure (11, 21, 29,
41). The experimental evidence for protection and the increasing
number of reports on the presence of filamentous bacteria in freshwater
ecosystems (12, 13, 19, 35, 39, 41) indicate that this
bacterial morphotype exhibits an ecologically significant defense
strategy against protozoan grazing. It is not known to which species
these protected forms belong. Additionally, it is unclear if the
filamentous bacteria grow permanently with these, with respect to
grazing, advantageous morphological properties or if they express these
characteristic features only under strong grazing pressure.
In a recent study, Pernthaler et al. (30) demonstrated that
a slow-growing bacterial community reacted to the addition of bacterivorous flagellates within 1 day: one group produced filamentous, grazing-resistant forms, and another group of bacteria reacted with a
massive growth rate increase. Similarly, Jürgens et al. (21) observed in enclosure studies, after experimentally
increasing the protozoan grazing pressure, that there was a rapid and
strong change in the morphological structure of the bacterial
community. After 3 days, mainly filamentous and other inedible
bacterial cells dominated the bacterial biomass, with a prevalence of
80 to 90%.
Different mechanisms are conceivable for such changes in the
morphological structure of bacterial communities. First,
nonfilamentous, edible strains may simply be replaced after some time
by inedible, permanently filamentous strains. In situations with
bacterial generation times longer than 1 day and undetectably low
abundances of filamentous cells (30), such an indirect
selection mechanism can hardly cause visible changes in community
structure within 24 h. But the possibility cannot be ruled out
that this mechanism is of relevance in natural ecosystems. Second,
medium-size, edible cells may become elongated and thus form filaments.
This type of response to strong protistan grazing might be controlled
by two different mechanisms: (i) elongation of the cells due to
grazing-mediated changes in bacterial growth conditions (indirect
induction of filament formation) or (ii) direct induction of
morphological changes by chemical stimuli. Such chemical stimuli might
be produced and released by the protozoan predators (predator
kairomone) or produced by the prey bacteria and set free by the
predators during digestion. The second type of stimuli would act as an
alarm substance. It is not known if selection or one of the induction
mechanisms triggers the observed reactions of bacterial communities.
Pernthaler et al. (30) speculated that a chemical stimulus
caused the observed changes in their experiments, since they found an
immediate response upon addition of a flagellate grazer.
Detailed information on the interactions of bacteria with protozoan
grazers and the resulting bacterial defense strategies are necessary
for a comprehensive understanding of a number of important issues in
microbial ecology. This includes questions about the influence of
protozoa on (i) the bacterial species composition of natural
communities, (ii) the regulation of bacterial production and
mineralization in aquatic systems, and (iii) the survival and behavior
of allochthonous bacteria such as pathogenic members of the family
Enterobacteriaceae or genetically engineered microorganisms in the environment.
In this study, we used a model system to investigate the interactions
of two bacterial strains with the bacterivorous nanoflagellate Ochromonas sp. The bacterium Vibrio sp. strain
CB5 originated from the pelagic zone of Lake Constance (southern
Germany) and was isolated from a chemostat inoculated with a water
sample from that lake (14). The other strain,
Comamonas acidovorans PX54, represents a member of a
phylogenetic group which is abundant in Lake Plußsee (located near
Plön, northern Germany) and in other lakes in the same area
(9).
In this study, we investigated mechanisms that control the observed
changes in the composition of the model community and investigated
possible defense strategies of pelagic bacteria against protozoan
grazing.
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MATERIALS AND METHODS |
Microbial strains, culture conditions, and media.
Two
bacterial strains were used as a defined, simple bacterial community.
C. acidovorans PX54 (
subclass of the class
Proteobacteria) was isolated from Lake Plußsee, Germany
(9). Vibrio strain CB5 (
subclass of the class
Proteobacteria) was obtained from a chemostat which was
inoculated with a mixed bacterial culture from Lake Constance, Germany
(14). Both strains were identified by low-molecular-weight
RNA profiling (9, 16, 17) and sequencing of the 16S rRNA
gene (26).
Bacterial strains were stored at
70°C and cultured on nutrient
broth-soyotone-yeast extract medium (NSY medium) consisting of a
mineral medium (modified Chu medium; 14, 27) plus
equal amounts of nutrient broth, soyotone, and yeast extract (all from Difco) as a complex substrate. Different substrate concentrations were
used for the chemostat and the other media. Liquid NSY medium for
growth curve determination in batch culture and solid NSY medium
contained a total of 9 g of the complex substrate per liter (3 g
of each source per liter); the chemostat NSY medium and liquid medium
used as an inoculum contained 9 mg of the same complex substrate per
liter (3 mg of each source per liter). The solid medium contained
15 g of agar per liter.
A facultatively mixotrophic
Ochromonas sp. strain isolated
from Lake Constance by D. Springmann served as a model organism
for
bacterivorous flagellates. The flagellate (4 to 6 µm in diameter)
is
able to grow entirely heterotrophically (bacterivorously) in
the dark.
In the light, the flagellate is unable to maintain growth
based on
photosynthesis alone. During mixotrophic growth under
optimal light
intensities, the heterotrophic production of the
Ochromonas
sp. dominates and less than 10% of its biomass production
results from
primary production (
15). Under the experimental
conditions
used in this study, the flagellate behaves like a typical
heterotrophic
interception feeder. Flagellates were grown in the
mineral medium
enriched with an autoclaved wheat grain (nonaxenic
cultures with living
bacteria present) or heat-killed bacteria
(axenic cultures without
living bacteria) as a food source.
Axenic Ochromonas sp. cultures.
Axenic
flagellate cultures (free of living bacteria) were produced by adding
antibiotics (tetracycline, streptomycin, and chloramphenicol, each at
40 mg/liter plus 5 mg of nutrient broth per liter) to a culture with a
bacterium-flagellate cell ratio of 3:1. After 12 h, the culture
was diluted to a concentration of 0.8 flagellate ml
1.
Samples (100 µl) of this dilution were then pipetted into 24-well cell culture plates containing mineral medium and about 107
heat-killed bacteria ml
1 (70°C, 2 h). After 1 week, a sample from each well (total, 96) was inspected for flagellate
growth by phase-contrast microscopy. The presence of bacterial
contamination was confirmed by plating subsamples on NSY agar, by
culturing subsamples in liquid NSY medium, and by inspection of
4',6-diamidino-2-phenylindole (DAPI)-stained subsamples by
epifluorescence microscopy (see below). With this screening procedure,
six cultures of Ochromonas sp. clones were found to contain
no living bacteria. These Ochromonas sp. cultures were kept
in six-well cell culture plates with heat-killed bacteria in the light.
The axenic cultures were tested routinely and just prior to use for
bacterial contamination with the procedures described above.
Chemostat cultures.
Chemostat experiments were run in a
one-stage chemostat with a 2-liter reactor at a dilution rate of 0.5 day
1 (doubling times, 33.3 h) at 15°C in the dark.
Chemostat cultures were mixed by aeration with sterile air. NSY
chemostat medium was sterilized by filtering through a sandwich filter
consisting of a glass fiber prefilter and a 0.2-µm-pore-size
cellulose-acetate filter (both from Sartorius, Göttingen,
Germany). The absence of bacterial contaminants during the chemostat
experiments was verified by epifluorescence microscopy for DAPI-stained
cells not labelled with one of the antibodies (see below) and plating on NSY agar.
Three chemostat experiments with the two bacterial strains were run
(Table
1). Each experiment consisted of
two phases. In
the first phase, the bacteria were cultured alone or
together;
the second phase started with inoculation of the flagellate
(designated
the Flag1 and Flag2 experiments, respectively). In the
third experiment,
no flagellate was introduced (Table
1); instead, the
dilution
rate was increased from 0.5 to 2.0 day
1
(designated the Dilut experiment). At the beginning of the Flag1
and
Dilut experiments, the chemostat was inoculated with both
bacterial
strains simultaneously. In the Flag2 experiment, the
chemostat was
inoculated initially with
C. acidovorans PX54 and
15 days
later with
Vibrio strain CB5. Samples (100 ml) were taken
at
24- to 48-h intervals. Additional samples (10 ml) were taken
in the
transient stages after the inoculations with the flagellate.
In the
Flag1 and Flag2 chemostat experiments, different
Ochromonas sp. clones were used because the axenic stock culture used for
inoculation in the Flag1 experiment was contaminated with bacteria
before the Flag2 experiment began.
Microbial abundance, bacterial cell size, and biomass.
Ten-milliliter chemostat subsamples were taken and fixed with
formaldehyde (2% final concentration) for determination of total bacterial abundance, flagellate abundance, the abundances of the two
bacterial strains, and bacterial cell size. Samples were stored at
4°C until analysis. Fixed subsamples were stained with 0.1% (wt/vol)
DAPI, filtered on 0.2-µm-pore-size black polycarbonate filters
(Nuclepore), and enumerated by epifluorescence microscopy for
determination of bacterial and flagellate abundances (31). At least 500 bacterial and 100 protistan cells were counted per sample.
For determination of bacterial cell size and biomass (whole bacterial
population), the lengths and widths of at least 1,000 DAPI-stained
cells were measured by using digitized images. These images of
bacterial cells were produced by an epifluorescence microscope (Zeiss
Axiovert 135TV) equipped with a charge-coupled device camera (MIT Dage)
at a magnification of ×1,000. Sizing was done with the Image I image
analysis system (Brock & Michelsen, Birkerod, Denmark). The system was
calibrated with fluorescently stained latex beads of known diameter
(Polysciences Inc., Warrington, Pa.). For latex beads 0.5, 0.75, 1.0, and 2.0 µm in diameter, a linear relationship between the measured
mean diameter (dm) and mean real diameter
(dr) was found (dm = 1.50 · dr; r = 0.996; n = 4). This relationship was used to calculate
bacterial cell sizes from measured data for all cells up to 2.0 µm in
length. For the minority of cells longer than 2.0 µm, a constant
length overestimation of 0.66 µm per cell was assumed. Bacterial
cells longer than 10 µm were termed filamentous. Cell volume was
calculated by using the formula of Andersson et al. (2). For
calculation of bacterial biomass, a conversion factor of 220 fg of C
µm
1 was used (40).
Abundance of C. acidovorans PX54 and
Vibrio strain CB5 and specific cell size.
The two
bacterial strains were distinguished by using specific antibodies and
indirect immunofluorescence microscopy. Vibrio strain CB5
cells were recognized by a polyclonal rabbit antiserum, and C. acidovorans PX54 cells were recognized by a monoclonal antibody
(9). Both strains showed a characteristic ring fluorescence and no cross-reactivity. Immunofluorescent staining of bacterial cells
was done with the primary antibodies plus
dichlorotriazinylaminofluorescein (DTAF)- or Texas red-labelled
secondary antibodies (Dianova, Hamburg, Germany) in accordance with the
protocol of Faude and Höfle (9). In addition, cells
were stained with 0.1% (wt/vol) DAPI before filtration on
0.2-µm-pore-size polycarbonate filters. Due to the heterogeneity of
the distribution of cells on the filter, relative abundances of the
labelled cells were determined instead of absolute abundances.
DAPI-stained cells (at least 500) and antibody-labelled cells were
counted on the same areas. The resulting mean percentage of labelled
cells was used to calculate the absolute abundance of Vibrio
strain CB5 and C. acidovorans PX54 with the help of separate
determination of the total bacterial cell number (see above).
For determination of strain-specific cell sizes, DTAF-antibody-labelled
cells were sized as described above for DAPI-stained
cells. To
compensate for overestimation due to fluorescent labels
at the surface
of the bacterial cells, a correction factor was
established. To obtain
a wide range of cell lengths and widths,
pure cultures of
C. acidovorans PX54 and
Vibrio strain CB5 were
grown in
batch cultures at 15 and 30°C and harvested at several
stages.
Specimens of each subsample stained with either DTAF-labelled
antibodies or DAPI were sized. Linear regression analysis of the
resulting mean cell lengths and widths gave the following relationship
of measured length or width between DAPI- and DTAF-antibody-stained
cells:
dDAPI = (
dDTAF 
0.1986)/1.0036 (
n = 11;
r = 0.997),
where
dDTAF is the measured size (length or
width) of DTAF-antibody-labelled
cells and
dDAPI
is the measured size of DAPI-stained cells of
the same population. All
specific size or biomass data were corrected
for overestimation due to
antibody labelling and overestimation
due to DAPI staining. An
exception is the size class distribution
of the
Vibrio
strain CB5 and
C. acidovorans PX54 populations shown
in Fig.
5. The size data presented in that figure were only corrected
for size
overestimation caused by antibody labelling. This was
done to avoid a
strong distortion of bacterial size class distribution
due to different
handling of cells smaller and larger than 2.0
µm in correcting for
DAPI-caused size overestimation. This resulted
in a slight
overestimation of measured cell lengths, but size
class distribution
was not distorted.
Determination of specific CFU from chemostat samples.
Chemostat samples were diluted with sterile mineral medium in 10-fold
steps up to dilutions yielding 30 to 100 colonies per agar plate,
plated on solid NSY medium, incubated at room temperature for 4 days,
and inspected by eye for the total number of colonies, the percentage
of colonies from the two bacterial strains, and possible contamination.
The colonies of the two strains were easily distinguishable by
morphology.
Batch culture growth studies.
Batch cultures were used to
study the dependence of bacterial cell size on growth stages.
Triplicate 150-ml Erlenmeyer flasks were enriched with NSY medium (9 g
of substrate per liter) and rotated at 150 rpm and 15°C. Optical
density was measured at 578 nm, and bacterial cell size was measured as
outlined above. Pure cultures of the bacterial strains were grown in
the absence of the flagellate.
Simulation of the effect of nonselective grazing by increasing
the chemostat dilution rate (Dilut experiment).
During
steady-state growth in chemostat cultures, the bacterial growth rate
(µ) is identical to the dilution rate of the chemostat (D). If bacterivorous flagellates are introduced, a
nonselectively grazed bacterial population grows under steady-state
conditions at the following rate (per hour):
where
G is the grazing rate of the flagellate
population,
CTot is the community clearance rate
of the flagellate population,
CInd is the mean
individual flagellate clearance rate,
NFlag is
the total flagellate number in the chemostat,
V is the
volume
of the chemostat reactor, and
AFlag is
the abundance of flagellates.
To simulate the effect of grazing by a
flagellate population with
a given abundance and clearance rate in a
bacterial community
growing at dilution rate
D, this rate
has to be increased to
Ds:
D + (
CInd × AFlag) = µ
Ds (per hour). In the Dilut experiment,
the
dilution rate was increased from 0.5 to 2.0 day
1. This
increase simulates the effect of nonselective grazing by
a flagellate
population of 8.8 × 10
3 ml
1 at a
clearance rate of 7.1 nl flagellate
1 h
1
(
15).
 |
RESULTS |
Abundance of C. acidovorans PX54 and Vibrio
strain CB5 in flagellate-free and flagellate-controlled phases of the
Flag1 and Flag2 experiments.
Average total bacterial numbers were
(10.3 ± 0.5) × 106 ml
1 (Flag1
experiment) and (9.9 ± 0.4) × 106 ml
1
(Flag2 experiment, after inoculation with Vibrio strain CB5) in the flagellate-free phase (Table 2 and
Fig. 1 and
2). After inoculation with
Ochromonas sp., bacterial abundance dropped to mean
steady-state values of (0.34 ± 0.07) × 106
ml
1 (Flag1 experiment) and (0.32 ± 0.06) × 106 ml
1 (Flag2 experiment). Kinetics of
flagellate increase and bacterial decrease in the transient stage
differed considerably between the two experiments, but steady-state
bacterial abundances before and after inoculation with the flagellate
showed only slight differences (Table 2). After inoculation, the
numbers of flagellates increased exponentially over periods of 10 days
(Flag1 experiment) and 6 days (Flag2 experiment), to maximum abundances
of 15.1 × 103 ml
1 (Flag1 experiment)
and 14.0 × 103 ml
1 (Flag2 experiment).
Thereafter, abundances decreased slowly and reached steady-state levels
of (1.7 ± 0.3) × 103 ml
1 (Flag1
experiment) and (1.2 ± 0.3) × 103 ml
1
(Flag2 experiment) toward the end of the experiments (Fig. 1 and 2).
During the steady state of the flagellate-free phase of the Flag2
experiment, the C. acidovorans PX54 abundance showed no
significant change (P > 0.1) after inoculation with
Vibrio strain CB5 and only slight differences
(P < 0.05) from the steady state of the
flagellate-free phase of the Flag1 experiment (Table 3). During the flagellate-free phase,
Vibrio strain CB5 dominated, with mean relative abundances
of 93.5% (Flag1 experiment) and 92.7% (Flag2 experiment). During the
flagellate-controlled steady state, C. acidovorans PX54
constituted 67.0% of the total bacterial abundance in the Flag1 and
Flag2 experiments (Fig. 1, 2, and 3). In
the Flag1 experiment, a grazing-induced decrease in total bacterial abundance started 1.5 days after inoculation with the flagellate while
changes in the relative abundances of the two strains followed 1.2 days
later (Fig. 4). In the Flag2 experiment,
the total bacterial numbers decreased first and an increase in the
relative abundance of C. acidovorans PX54 followed with a
delay of 0.6 day. The shorter delay in the Flag2 experiment
corresponded to the faster kinetics of changes during the transient
stage of this experiment (Table 2).
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TABLE 2.
Steady-state parameters of the flagellate-free and
flagellate-controlled phases and parameters of the transient stages
(after flagellate introduction until establishment of a new steady
state) of the Flag1 and Flag2 chemostat experimenta
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FIG. 1.
Influence of grazing by the bacterivorous flagellate
Ochromonas sp., inoculated on day 14 into C. acidovorans PX54 and Vibrio strain CB5 chemostat
cultures (Flag1 experiment). (A) Total bacterial abundance and
flagellate abundance. (B) Relative abundance of C. acidovorans PX54 determined either by immunofluorescence
microscopy or by distinguishing colony types on agar plates. (C) Mean
cell volume of the total bacterial community and percentage of
C. acidovorans PX54 cells larger than 10 µm
(filamentous cells). (D) Biomasses of C. acidovorans PX54
and Vibrio strain CB5 populations in the flagellate-free and
flagellate-controlled phases. Inoculation of the bacterivorous
flagellate Ochromonas sp. is indicated by vertical
lines.
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FIG. 2.
Influence of grazing by Ochromonas sp. on the
model community consisting of C. acidovorans PX54 and
Vibrio strain CB5 (Flag2 experiment). (A) Bacterial
abundance before and after inoculation with Vibrio strain
CB5 and after introduction of the predator Ochromonas sp.
and abundance of this flagellate. (B) Relative abundance of C. acidovorans PX54 and percentage of C. acidovorans PX54
cells larger than 10 µm (filamentous cells).
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TABLE 3.
Abundance of C. acidovorans PX54 and
Vibrio strain CB5 in the steady state of the flagellate-free
phases of the three chemostat experimentsa
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FIG. 3.
(A and B) Microphotographs of C. acidovorans
PX54 (green) and Vibrio strain CB5 (red) stained with
fluorescently labelled antibodies (Flag1 experiment). (A) Before
flagellate inoculation (day 8). (B) After flagellate inoculation (day
32). (C) Filamentous C. acidovorans PX54 cells grown in a
flagellate-free batch culture (late exponential growth stage; cells
stained with DAPI).
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FIG. 4.
Transient stage after introduction of the flagellate (on
day 14) into a chemostat culture of C. acidovorans PX54 and
Vibrio strain CB5 (Flag1 experiment). In the beginning, the
total bacterial numbers of both species decreased at similar rates,
indicating nonselective grazing by the flagellate (lower panel). After
day 16, Vibrio strain CB5 abundance continued to decrease
but C. acidovorans PX54 abundance increased again and the
relative species composition changed (upper panel).
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Bacterial biomass, cell size, and filament formation.
After
inoculation with the flagellate, the abundance of the Vibrio
strain CB5 populations was reduced by 98.8% in both experiments and
the biomass decreased by 98.1% (Fig. 1D). In contrast, the C. acidovorans PX54 population decreased by 66.0% (Flag1 experiment) and 70.3% (Flag2 experiment) in abundance but only by 23.3% in biomass (Fig. 1D). Differences in changes in abundance and biomass between the two species are due to the different relative changes in
mean cell size and cell size distribution (Fig. 3 and
5). The cell sizes of both bacterial
strains remained unchanged during the flagellate-free phase of the
experiments (Fig. 1C and 5). After introduction of the flagellate, the
mean bacterial cell size increased in both experiments but the increase
in Vibrio strain CB5 cell size was less than that of
C. acidovorans PX54. The mean cell length of
Vibrio strain CB5 increased only during the transient stage,
and during the following flagellate-controlled phase, it showed a
higher but stable mean value (Fig. 5). The cell size of C. acidovorans PX54 increased during the transient stage too, but in
contrast to that of Vibrio strain CB5, the increase in cell
size continued during the first part of the steady state in the
flagellate-controlled phase. At 9 (Flag1 experiment) and 10 (Flag2
experiment) days after inoculation with the predator, the first
filamentous C. acidovorans PX54 cells (larger than 10 µm)
were observed (Fig. 1C and 2B). Eight (Flag1 experiment) and 9 (Flag2
experiment) days later, the numbers of filamentous cells peaked. The
number of large C. acidovorans PX54 cells decreased thereafter, and at the end of both experiments, no filamentous cells
were observed. The measured C. acidovorans PX54 cell length ranged from 0.3 to 4.2 µm (flagellate-free phase) and from 0.3 to
49.8 µm (flagellate-controlled phase) (Fig. 5). During both experiments, no Vibrio strain CB5 cells larger than 5 µm
occurred (Flag1 experiment; Fig. 3) and the Vibrio strain
CB5 cell size ranges were 0.3 to 2.5 µm (flagellate-free phase) and
0.3 to 4.2 µm (flagellate-controlled phase) (Fig. 5).

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FIG. 5.
Size class distribution of Vibrio strain CB5
cells (left panels) and C. acidovorans PX54 cells (right
panels) in corresponding chemostat samples from flagellate-free and
flagellate-controlled phases (Flag1 experiment). Cells longer than 5 µm were pooled in one size class (>5 µm). To avoid distortion of
size class distribution, measured cell lengths were corrected for size
overestimation caused by cell staining with fluorescently labelled
antibodies but not for size overestimation caused by DAPI staining (for
details, see Materials and Methods).
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Due to the different cell size distributions, the two bacterial
populations showed different percentages of cells smaller
than 1.2 µm, which are presumably easily ingestible (
29). During
the flagellate-controlled phase of the Flag1 experiment, 72 to
75% of
the
Vibrio strain CB5 cells but only 14 to 41% of the
C. acidovorans PX54 cells were smaller than 1.2 µm.
The observed strong changes in the relative abundances of the two
strains occurred in both experiments several days before
the occurrence
of filamentous
C. acidovorans PX54 cells. Flagellate
control
of the composition of the bacterial community remained
unchanged in
both cases until the end of the experiments and lasted
longer than the
occurrence of filaments (Fig.
1B and C and 2B).
Increase in dilution rate to simulate nonselective grazing pressure
(Dilut experiment).
To simulate nonselective loss rates, the
dilution rate was increased to 2.0 day
1 (about 50% of
µmax for both strains) after the chemostat was run at 0.5 day
1 for 10 days (Fig. 6).
This increase in dilution rate was supposed to simulate mortality
equivalent to a grazing rate of 1.5 day
1 on a total
bacterial community growing at a rate of 0.5 day
1.
Theoretically, such a grazing rate could be caused by an
Ochromonas sp. population of 8.8 × 103
ml
1 with a clearance rate of 7.1 nl
flagellum
1 h
1. Such a clearance rate was
measured for Ochromonas sp. under comparable conditions
(15). The first phase of the experiment with a dilution rate
of 0.5 day
1 was identical to the other two chemostat
experiments. However, the initial steady-state total bacterial number
(7.3 × 106 ml
1) was significantly
(P < 0.01 for both experiments) lower and the relative
C. acidovorans PX54 abundance (13.7% ± 1.8%) was slightly
but significantly (P < 0.01 for both experiments)
higher than in the respective first phases of the two other experiments (Fig. 1, 2, and 6). The lower total bacterial number was balanced by a
higher mean cell volume (0.161 ± 0.006 µm3), so
that the total bacterial biomass of 204.9 ± 5.6 µg of C liter
1 showed no significant difference
(P > 0.1 for both of the other experiments) from the
other chemostat studies (Flag1 experiment, 199 ± 17 µg of C
liter
1; Flag2 experiment, 186 ± 27 µg of C
liter
1).

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|
FIG. 6.
Influence of growth rate on the cell size and abundance
of C. acidovorans PX54 and Vibrio strain CB5 in
chemostat cultures (Dilut experiment). The change in dilution rate
(growth rate) from 0.5 to 2.0 day 1 at day 10 simulated
nonselective grazing similar to size-selective grazing by
Ochromonas sp. in flagellate-controlled phases of the Flag1
and Flag2 experiments.
|
|
The dilution rate increase initially resulted in changes in total
bacterial abundance, mean cell volume, and the relative
abundance of
the strains (Fig.
6). After 3 days, a new steady
state was established
with a significantly higher mean cell volume
(
P < 0.01) and a significantly lower total bacterial abundance
(
P < 0.01) but no significant difference
(
P > 0.1) in the relative
abundance of
C. acidovorans PX54. Filamentous cells (>10 µm) were
not observed
in the first or second phase, i.e., after the fourfold
increase in the
dilution rate.
Dependence of Vibrio strain CB5 and C. acidovorans PX54 cell size on growth stage in flagellate-free
batch cultures.
The cell sizes of both species changed with the
growth stage of batch cultures, and in both cases, they reached a
maximum during the exponential growth stage. In each growth stage, the mean cell volume of C. acidovorans PX54 was larger than that
of Vibrio strain CB5 (Table
4). Additionally, the variation in the mean cell volume between the exponential growth stage and the stationary stage was twofold stronger for C. acidovorans
PX54 than for Vibrio strain CB5. During the late exponential
growth stage, C. acidovorans PX54 cells larger than 10 µm
developed with a relative abundance of less than 1% (Table 4).
However, the measured maximum growth rate of Vibrio strain
CB5 was higher than that of C. acidovorans PX54 (Table 4).
 |
DISCUSSION |
We observed strong changes in the cell morphology and the absolute
and relative abundances of the two bacterial strains after introduction
of a bacterivorous flagellate in our chemostat experiments (Fig. 1, 2,
3, and 5). Similar changes caused by protozoan grazing, especially the
occurrence of filamentous bacteria, were observed by others in complex
continuous cultures (30, 38) and in field experiments
(21). The methods used in these studies, however, did not
allow the analysis of species-specific bacterial responses to protozoan
grazing. In the former two studies, the investigators examined the
influence of protozoan predators on different phylogenetic groups of
bacteria (
,
, and
subclasses of the class
Proteobacteria). Each of these groups covers a wide range of
bacterial species and includes members which differ drastically in the
type of metabolism. In the latter experiments, Jürgens et al.
(21) analyzed the effect of protozoan grazing on
morphologically defined groups of natural bacteria, which may also
cover a wide range of species. In contrast to these studies, we
investigated the influence of flagellate grazing on a well-defined
bacterial community consisting of only two species. This allowed us to
examine the impact of grazing on single bacterial species and to study
species- or strain-specific strategies against grazing losses.
Mechanisms controlling the changes after introduction of the
flagellate.
We suggest that the observed changes in the relative
abundances of the two strains and the occurrence of filamentous
C. acidovorans PX54 cells resulted from increasing growth
rates caused by flagellate grazing combined with differences in the
species' ability to increase cell length with growth rate and
size-selective grazing of the flagellate. During the compositional
changes, several steps could be distinguished (Fig.
7).

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|
FIG. 7.
Four-step mechanism explaining the observed changes in
relative species composition of binary chemostat cultures after
introduction of the flagellate Ochromonas sp. Changes were
caused by a combination of a grazing-controlled increase in the
bacterial growth rate with the different growth rate-dependent
elongation of cells of the two species and size-selective grazing by
the flagellate.
|
|
First, grazing of the introduced flagellate reduced bacterial numbers
(Fig.
1A,
2A, and
4). Since the cell sizes of the two
strains were
similar, both populations were grazed at similar
rates from the
beginning and thus decreased at similar rates (Fig.
4). Due to similar
loss rates, their relative abundances remained
stable (Fig.
4).
Second, the growth rate of the surviving bacteria increased due to the
reduction of bacterial cell numbers and biomass. The
reduction of
inter- and intraspecific competitors increased the
amount of substrate
available for every single cell, thereby enabling
higher growth rates.
The dependence of growth rate on the chemostat
dilution rate and
grazing rate is defined above (see Materials
and Methods). Strains
which were not able to balance grazing losses
with higher growth rates
would have been washed out of the system.
Higher activity of the
bacterial population under grazing pressure
in comparison to the
uninfluenced population was also demonstrated
in other chemostat
experiments (
4,
42). In addition, bacterial
growth rate may
be positively influenced by release of dissolved
and particulate
organic matter and recycling of nutrients by the
phagotrophic
flagellates (
1,
18,
36).
Third, the growth rate increase paralleled an increase in cell size for
both species (Fig.
1C and
5) but the extents of cell
elongation were
very different between the two species (Fig.
5).
A dependence of cell
size on the growth rate was demonstrated
for both strains in the
chemostat Dilut experiment (Fig.
6) and
the batch culture experiments
(Table
4) and is also known for
other bacterial species (
5,
7,
34). This dependence is
partly caused by an increasing need for
space for the ribosomes,
which increase in number as the growth rate
increases (
5,
32,
33). In contrast to
Vibrio
strain CB5, in both continuous and
batch cultures,
C. acidovorans PX54 showed a strong increase in
mean cell length with
growth rate and a strong expansion of the
cell length distribution
toward long filamentous cells.
Fourth, the strong increase in cell length made a large percentage of
the
C. acidovorans PX54 cells less edible or completely
inedible. Despite an increase in size, the majority of
Vibrio strain CB5 cells remained in the edible size range.
The resulting
differences in edibility between the two populations
resulted
in different specific loss rates and then caused the observed
changes in the species compositions of the communities.
Exclusion of other conceivable mechanisms.
The possibility of
species-specific grazing based on characteristics other than cell size
can be excluded, because of the initially similar rates of decrease of
the two bacterial species (Fig. 4). The observation that the absence or
presence of Vibrio strain CB5 in the flagellate-free stage
did not influence the steady-state abundance of C. acidovorans PX54 (Table 3) indicated that reduction of the
possible competitor Vibrio strain CB5 by the flagellate was
not the reason for the lesser decrease of the C. acidovorans
PX54 population. Low C. acidovorans PX54 abundances and
biomasses during flagellate-free growth indicate that this strain was
able to use only a small part of the supplied complex carbon source.
During the flagellate-controlled phase, the growth of both strains may
have been enhanced by the additional substrate supply due to possible
release of dissolved and particulate organic material by the
flagellates (1, 18). C. acidovorans PX54 might
have profited more than the other strain by such a substrate release.
The Dilut experiment demonstrated that a change in growth rate is not
enough to change the relative composition of the bacterial
community
studied (Fig.
6). This experiment simulated a grazing
pressure assumed
to occur in the flagellate-controlled phases
of the other two chemostat
experiments. In contrast to real flagellate
grazing, the simulated
grazing pressure is nonselective. Both
bacterial populations reacted to
the treatment with an increase
in cell size, but without size-selective
grazing, no compositional
changes occurred. The observed absence of
filamentous
C. acidovorans PX54 cells may be caused by
physiological disadvantages of strongly
elongated cells. For example,
filamentous cells have a smaller
surface-to-volume ratio than
medium-size cells. When filamentous
cells grow under limited-substrate
conditions (e.g., chemostat
culture) and have to compete with much
smaller cells, then they
have a disadvantage in terms of substrate
uptake, resulting in
lower growth rates. In chemostat experiments with
grazing pressure,
this disadvantage may be balanced due to protection
against grazing
losses (a lower growth rate than the competitors but
also lower
loss rates). Growth during the exponential phase of batch
cultures
was, in contrast to growth in the chemostat Dilut experiment,
not substrate limited. Therefore, filamentous growth of
C. acidovorans PX54 was enabled by lack of intraspecific competition
with smaller
cells.
The observed differences in flagellate increase and bacterial decrease
kinetics during the transient stage between the Flag1
and Flag2
experiments (Table
2) may reflect the different growth
abilities of the
two different
Ochromonas sp. clones used in the
two studies.
It is surprising that despite different kinetics
during the transient
stage, mostly insignificant differences in
the overall percentage of
bacterial strains and total bacterial
abundance occurred. It seems that
the two clones have different
maximum growth rates (transient stage)
but grow at lower rates
(i.e., during the steady state of chemostat
experiments) with
comparable growth efficiencies.
Role of filamentous bacteria in the natural environment and in
chemostat experiments.
In general, filament formation by bacteria
is considered to be a protection mechanism against protozoan grazing
(11, 20, 21, 30, 38). To have a refuge from bacterivorous
nanoflagellates like Ochromonas sp. (4 to 6 µm in
diameter), it is not advantageous to form filaments longer than 10 µm. It is sufficient if cells exceed the maximum ingestion size of
these flagellates. In bacterivorous flagellates, this size is normally
smaller than the cell diameter. Therefore, bacteria larger than 4 to 6 µm should be fully protected against grazing by Ochromonas
sp. Both chemostat experiments with the flagellate-controlled phase
confirm this presumption. In each experiment, compositional changes
started before filament formation (Fig. 1B, 1C, and 2B). Additionally,
the stable flagellate-controlled community composition lasted until the
end of each experiment and, thus, longer than the filaments were
present in the chemostats (Fig. 1B, 1C, and 2B). We assume that the
observed occurrence of C. acidovorans PX54 filaments longer
than necessary for full protection is caused by an overshooting
reaction in response to the increasing growth rate. For bacteria from
ecosystems like meso- to hypertrophic lakes, it is uncertain that
filament formation is such an overshooting reaction. It is, rather,
conceivable that formation of long filaments is a protection strategy
against larger protozoan predators like large heterotrophic flagellates
(3) or ciliates (37). However, in an
investigation of Lake Plußsee bacterioplankton, Weinbauer and
Höfle (43) found that viral lysis is size specific and
can affect the cell size distribution of bacterial communities. In oxic
waters, cells larger than 2.4 µm were not infected with viruses,
suggesting that filamentous bacteria have advantages other than grazing
resistance.
Delay of filament formation.
In contrast to other experimental
studies which demonstrated that grazing or the presence of a protistan
grazer caused the formation and dominance of filamentous bacteria
(21, 30, 38), filament formation in our chemostat
experiments occurred after 9 and 10 days and not within 1 to 3 days as
described by others. This may have been caused by the initially low
flagellate abundances in our studies and the following slow increase in
abundance and grazing pressure (Fig. 1A and 2A). Thus, grazing pressure
during the first days after inoculation with the flagellate was much lower than in the studies mentioned above.
Conclusions.
The main conclusion of this study is that changes
in the morphological structure of bacterial communities like
development of filamentous cells under high grazing pressure are not
necessarily a result of chemical stimuli released by the protozoan
predators. This was demonstrated by the development of filaments in the
absence of any protozoan predator by fast-growing C. acidovorans PX54 cells (Fig. 3). Furthermore, the ability of
C. acidovorans PX54 to grow as normal-size cells and as
filaments larger than 10 µm shows that shifts in the morphological
structure of natural bacterial communities towards filamentous cells do
not necessarily lead to the replacement of permanently medium-size
bacteria by permanently filamentous bacteria. There may be other
species that change their cell morphology by indirect or direct
induction mechanisms. We observed that influence of grazing caused an
indirect induction of filament formation via an increase in growth rate
of C. acidovorans PX54. This is one possible mechanism, but
it is conceivable that other indirect or direct mechanisms exist.
Chemical stimuli released by protozoan predators are likely to be
another (direct) induction mechanism, because interactions between
other groups of planktonic organisms are controlled by such stimuli
(8, 22, 23). Intraspecific communication of bacterial
populations by chemical stimuli (pheromones) has been documented for
several bacterial species in different phylogenetic positions (24,
44). However, chemical induction of defense strategies in
bacteria has not previously been proven.
In natural environments, a single protozoan predator species is in
contact with a wide range of bacterial species and each
bacterial
species or strain might have a different grazing defense
strategy. To
gain more insights into these complex interactions
between
bacterivorous protozoa and their prey, more studies with
single
predator species and single or a limited number of bacterial
strains
under controlled conditions are necessary. We cannot exclude
the
possibility that bacteria possess grazing defense strategies
similar in
diversity to their metabolic abilities.
 |
ACKNOWLEDGMENTS |
We thank D. Springmann for providing the original
Ochromonas sp. culture, E. R. B. Moore for
identification of the bacterial strains by 16S rDNA analysis, and K. Jürgens, M. G. Weinbauer, and T. Weisse for discussions and
help in improving the manuscript.
This study was supported by funds from the Bundesministerium für
Bildung, Wissenschaft, Forschung und Technologie (grant BEO-0319433B).
 |
FOOTNOTES |
*
Corresponding author. Present address:
Max-Planck-Institute für Limnologie, Department of Ecophysiology,
P.O. Box 165, D-24302 Plön, Germany. Phone: 49 4522 763 245. Fax:
49 4522 763 310. E-mail: hahn{at}mpil-ploen.mpg.de.
 |
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