Appl Environ Microbiol, July 1998, p. 2601-2608, Vol. 64, No. 7
0099-2240/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Department of Environmental Health Sciences, School of Hygiene and Public Health, Johns Hopkins University, Baltimore, Maryland 21205,1 and Research and Technology Directorate, U.S. Army Edgewood Research, Development and Engineering Center, Aberdeen Proving Ground, Maryland 21010-54232
Received 26 September 1997/Accepted 10 April 1998
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ABSTRACT |
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Wild-type Escherichia coli K-12 strain JA221 grows
poorly on low concentrations (
1 mM) of diisopropyl fluorophosphate
and its hydrolysis product, diisopropyl phosphate (DIPP), as sole phosphorus sources. Spontaneous organophosphate utilization (OPU) mutants were isolated that efficiently utilized these alternate sources
of phosphate. A genomic library was constructed from one such OPU
mutant, and two genes were isolated that conferred the OPU phenotype to
strain JA221 upon transformation. These genes were identified as
phnE and glpT. The original OPU mutation
represented phnE gene activation and corresponded to the
same 8-bp unit deletion from the cryptic wild-type E. coli
K-12 phnE gene that has been shown previously to result in
phnE activation. In comparison, sequence analysis revealed
that the observed OPU phenotype conferred by the glpT gene
was not the result of a mutation. PCR clones of glpT from
both the mutant and the wild type were found to confer the OPU
phenotype to JA221 when they were present on the high-copy-number pUC19
plasmid but not when they were present on the low-copy-number pWSK29
plasmid. This suggests that the OPU phenotype associated with the
glpT gene is the result of amplification and overproduction of the glpT gene product. Both the active phnE
and multicopy glpT genes facilitated effective metabolism
of low concentrations of DIPP, whereas only the active phnE
gene could confer the ability to break down a chromogenic substrate,
5-bromo-4-chloro-3-indoxyl phosphate-p-toluidine
(X-Pi). This result indicates that in E. coli,
X-Pi is transported exclusively by the Phn system, whereas DIPP (or its metabolite) may be transported by both Phn and Glp systems.
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INTRODUCTION |
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Organophosphorus compounds (OPCs) constitute the largest class of pesticides currently used in industrialized and developing nations. They are also produced for a variety of other applications in agriculture, industry, medicine, and chemical warfare (5, 10, 34). Many of these compounds are known to inhibit mammalian cholinesterases, including acetylcholinesterase, which leads to accumulation of acetylcholine at all cholinergic terminals and a resultant blockage of neural signal transmissions. The immediate and long-term effects that result from the impairment of the central nervous system and muscarinic and nicotinic receptors are broad and complex and vary from mild discomfort to coma and death (1, 21, 22, 45). The breadth and magnitude of OPC applications have resulted in high numbers of incidents of human poisoning and environmental concern (5, 28, 34).
Microbial degradation is a very important part of the metabolism of OPCs in the environment (5, 14, 18, 19, 34, 39, 42). Although microorganisms capable of degrading many of the OPC pesticides have been isolated, knowledge about the biochemical pathways and the genes involved in degradation is sparse (5, 19, 34).
We studied microbial utilization of the model OPC diisopropyl fluorophosphate (DFP) (used in ophthalmic medications and in the treatment of myasthenia gravis) and its breakdown product, diisopropyl phosphate (DIPP), in Escherichia coli K-12. It has been reported previously that E. coli K-12 possesses hydrolytic enzymes that detoxify OPCs, including DFP, soman, and paraoxon (16, 17, 54). Crude extracts of E. coli K-12 strain JA221 are capable of hydrolyzing DFP to DIPP and hydrofluoric acid (unpublished data). This hydrolysis can also take place at a slower rate spontaneously in an aqueous environment. Further utilization of DIPP as a phosphorus source is presumed to proceed through phosphoester hydrolysis, yielding monoester and finally inorganic phosphate (19). However, certain E. coli strains (e.g., ATCC 11775) do not grow well on phosphodiester (dimethyl phosphate) or phosphomonoester (methyl phosphate) substrates as sole phosphorus sources (52), indicating that the initial breakdown of DFP to its phosphodiester product, DIPP, may not be the rate-limiting step for its ultimate utilization.
In this study, we show that the wild-type E. coli strain JA221 does not effectively utilize low concentrations of DFP and DIPP as sole phosphorus sources. To understand the metabolism of organophosphates, we isolated mutants of JA221 that exhibit enhanced utilization of DFP and DIPP as sole phosphorus sources. Here we report characterization of these mutants and cloning and characterization of two genes involved in utilization of these OPCs by E. coli.
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MATERIALS AND METHODS |
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Chemicals, media, and growth conditions. DFP was obtained from Aldrich Chemical Company (Milwaukee, Wis.). The chromogenic substrate 5-bromo-4-chloro-3-indoxyl phosphate-p-toluidine (X-Pi) was obtained from Bachem BioScience Inc. (King of Prussia, Pa.). DIPP was a kind gift from William T. Ledford (Syntheco, Inc.). Unless otherwise specified, all other chemicals were obtained from Sigma Chemical Company (St. Louis, Mo.) and were of the highest purity available.
MOPS modified medium (MMM) (modified from the medium of Neidhardt et al. [40]) contained (per liter) 8.372 g of 3-(N-morpholino)propanesulfonic acid (MOPS), 0.717 g of N-tris(hydroxymethyl)methyl glycine (Tricine), 2.92 g of NaCl, 0.51 g of NH4Cl, 6 mg of MgSO4 · 7H2O, 3 mg of nitrilotriacetic acid, 48 mg of K2SO4, 102 mg of MgCl2 · 6H2O, 1 mg of MnSO4 · H2O, 2.8 mg of FeSO4 · 7H2O, 0.1 mg of CaCl2 · 2H2O, 0.1 mg of CoCl2 · 6H2O, 0.1 mg of ZnSO4 · 7H2O, 0.02 mg of H3BO3, 0.01 mg of Na2MoO4 · 2H2O, 0.01 mg of CuSO4, 30 mg of leucine, 20 mg of tryptophan, and 20 g of glucose, and the pH was adjusted to 7.4 with KOH. Purified agar (15 g; catalog no. A 7921; Sigma Chemical Co.) and 12 g of Na3 citrate · 2H2O per liter were used to prepare solid media. MOPS rich medium (MRM) was MMM fortified with 10 ml of a vitamin mixture (catalog no. B6891; Sigma Chemical Co.) and 20 ml of an amino acid mixture (catalog no. R7131; Sigma Chemical Co.) per liter. Organisms were routinely grown overnight at 37°C in an incubator-shaker at 200 rpm in broth or at 34°C on plates containing Luria-Bertani (LB) medium (41) supplemented with ampicillin.Utilization of alternate phosphorus sources. When utilization of alternate phosphorus sources was tested, MMM or MRM was used. Unless otherwise indicated, MMM was used since it gave results similar to the results obtained with MRM but required slightly longer growth periods. Ampicillin was used at a concentration of 100 µg/ml. Unless otherwise indicated, phosphorus sources were added (after the pH values of stock solutions were adjusted) as follows: 4 mM potassium phosphate for Pi-rich medium, 1 mM DFP (from a 1 M stock solution in isopropanol), and 1 mM DIPP. The medium containing DFP was used immediately after preparation. The concentration of the chromogenic substrate X-Pi was 0.1 mM in liquid X-Pi-containing medium, and 1 µmol (100 µl of a 10 mM stock solution) was spread onto P-deficient 90-mm plates 1 h prior to use. No phosphorus source was added to P-deficient media. To test for phosphorus source-dependent growth, bacteria were routinely grown in LB broth overnight, washed three times with P-deficient MRM broth, appropriately diluted, and used to inoculate broth or solid medium plates. Unless otherwise indicated, organisms were grown on solid media at 34°C for 34 to 40 h (for MRM) or 36 to 42 h (for MMM).
To ascertain the lag periods and generation times, bacteria were grown in MMM broth supplemented with 0.2 mM Pi (a growth-limiting concentration) for 18 h so that all of the Pi in the medium would be exhausted, appropriately diluted, and used as inocula. The generation times were calculated by using exponentially growing cells and regression analysis (20).Plasmids and strains.
The low-copy-number plasmid vector
pWSK29 was a kind gift from Sidney R. Kushner (48). The
high-copy-number plasmid vector pUC19 was obtained from Boehringer
Mannheim Biochemicals (Indianapolis, Ind.). E. coli K-12
strain JA221 (F
hsdM+ hsdR lacY leuB6
trpE5 recA1 
) (ATCC 33875) and the library of
Alteromonas haloplanktis 214 variant 3 in E. coli
K-12 strain JA221 (ATCC 37436) (32) were obtained from the
American Type Culture Collection (Rockville, Md.). Wild-type E. coli JA221 transformed with pBR322 or pUC19 was used appropriately
as a control with test organisms containing these plasmids. E. coli DH10B [F
mcrA
(mrr-hsdRMS-mcrBC)
80dlacZ
M15
lacX74 endA1
recA1 deoR
(ara leu)7697 araD139 galU galK
nupG rpsL] was obtained from Life Technologies (Gaithersburg,
Md.).
RL construct was made by deleting the EcoRI
fragment from the EcoRI sites in the pF1 genomic DNA insert
and the polylinker of pUC19; the excised fragment was ligated into a
pUC19 EcoRI site to generate pF
RR. A third construct
(pF
F) was made by excising the EcoRV fragment from the
pF1 clone, which deleted phnF completely (also
phnG and part of phnH) without affecting the
phnE gene (Fig. 1A).
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PCR. The 336- and 228-bp PCR constructs that contained 8-bp repeats in phnE were obtained for sequencing by using the 16-mer IEF1 forward primer (5'-GTTTACCAGCCCGTTC-3') and the 16-mer IER1 reverse primer (5'-CTCTTCGAGCTTGTTG-3') from JA221 and the DB mutant, respectively.
Using the 16-mer primers T621F (5'-GTGCTCATCATGATCG-3') and T2206R (5'-CGTGATTTCATGCGTC-3'), we obtained the 1,586-bp PCRpT constructs, which contained the glpT open reading frame (ORF), 176 bp of upstream flanking DNA, and 52 bp of downstream flanking DNA, by PCR amplification of the glpT gene from the following three sources: (i) plasmid pB9; (ii) genomic DNA from the original OPU isolate (DB); and (iii) genomic DNA from wild-type E. coli JA221. The inserts were excised by digestion with XhoI and HindIII and were ligated to SalI- and HindIII-digested pUC19 and pWSK29 vectors. The resultant PCRpT-pB9, PCRpT-DB, and PCRpT-JA constructs were used to chemically transform E. coli wild-type strain JA221.DNA sequencing. Universal primers were used to sequence flanking DNA regions of the insert in the pUC19 vector. To obtain DNA sequences of the genomic DNA regions, the sections of interest were amplified by PCR. The products were ligated to the pCRII vector by using the Invitrogen protocol (Invitrogen Corporation, San Diego, Calif.). Ligated plasmids were grown in E. coli DH10B, and both strands of the PCR-amplified region were sequenced. Eight 16-mer oligonucleotide primers, T621F, T1023F (5'-AGTCGCGATGGTCACC-3'), T1419F (5'-GGCGAATAATGCCACC-3'), T1805F (5'-AAGCAATCGAGATCCC-3'), T998R (5'GGTAACCCAACCGTCG-3'), T1393R (5'-AATCCTGTGGCTTGCC-3'), T1790R (5'-TTCATCATGGGTTCGG-3'), and T2206R, were used to sequence the entire PCRpT region that contained glpT. DNA sequencing was conducted by the dideoxy chain termination method (44).
Genomic DNA purification. Genomic DNA was purified with a Qiagen kit (Qiagen Inc., Valencia, Calif.) by using a modified protocol. E. coli genomic DNA was precipitated with isopropyl alcohol (prior to application to the column), spooled, rinsed with 70% ethanol, and dissolved in a minimum volume of TE buffer (43). The concentrations of salts and the pH were adjusted (to values comparable to the values for buffer G2 of the Qiagen kit), and the DNA was purified on the Qiagen column by using the manufacturer's recommendations.
Electroporation. Electrocompetent E. coli DH10B was transformed by plasmids by electroporation, using a Bio-Rad Gene Pulser electroporation system, a Pulse Controller, and 0.1-cm cuvettes at 2,500 V. Pulsed cells were suspended in SOC (43), incubated at 37°C for 60 min, and plated onto LB plates supplemented with ampicillin, and incubated at 34°C for 13 h.
Cloning. To isolate the OPU mutated gene(s) that conferred robust growth to E. coli JA221 on DFP-containing and DIPP-containing plates, we used standard molecular cloning techniques (3, 41, 43). The OPU mutant E. coli DB, which contained a ca. 5.6-kb library fragment on pBR322, was cured of the plasmid by using coumermycin A1 (8). Genomic DNA was purified from the plasmid-cured DB mutant and was partially digested with restriction endonuclease Sau3AI. DNA fragments (lengths, 4 to 20 kb) were purified by centrifugation (30,000 rpm for 28 h in an SW41 rotor at 4°C) in a sucrose density gradient (10 to 40% sucrose in 2 mM Tris-1 mM EDTA, pH 8.2) (41) and were ligated with DNA ligase to pUC19 that previously had been digested with restriction endonuclease BamHI and dephosphorylated with bacterial alkaline phosphatase (Sigma Chemical Co.). The ligated plasmids were used to transform electrocompetent E. coli DH10B by electroporation. Approximately 83,000 transformed colonies were pooled, and plasmids were purified by the alkaline lysis method (43). The resultant genomic DNA library was used to chemically transform E. coli wild-type strain JA221. Approximately 60,000 transformed cells were plated onto MRM supplemented with 1 mM DIPP as the sole phosphorus source.
Fifty colonies were identified that exhibited good growth on DIPP-containing plates. Plasmids were individually purified from 36 of these colonies and used to chemically transform E. coli wild-type strain JA221. The plasmids that conferred good growth to the bacterium on DIPP-containing plates were selected for further study.| |
RESULTS |
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Mutant isolation. The goal of this study was to identify genes involved in the bacterial metabolism of DFP or its hydrolysis product, DIPP. In particular, we searched for genes that significantly enhanced the utilization of these substrates as sole phosphorus sources.
Originally, we screened a genomic library of A. haloplanktis in E. coli K-12 strain JA221 (32) for genes that enhanced utilization of DFP, since the library was expected to contain the gene for a highly active diisopropyl fluorophosphatase (EC 3.1.8.2) (9, 13). The library was plated onto medium containing DFP as the sole phosphorus source. Cells were also plated onto DIPP-containing, P-deficient, and phosphate-rich media. The assumption was that clones carrying the plasmid with the diisopropyl fluorophosphatase gene would exhibit more vigorous growth on the DFP-containing plates than on the DIPP-containing plates. However, no clone was identified that exhibited such preferential growth on DFP-containing plates. Nevertheless, we were able to isolate a few spontaneous mutant bacterial clones that consistently grew well on both DIPP-containing (Fig. 2A) and DFP-containing plates compared with E. coli JA221. These isolates (DB, DC, FB, FC, and FL) were designated organophosphate utilization (OPU) clones. To test whether the OPU phenotype resulted from the A. haloplanktis library plasmid or from the mutation in the E. coli genome, we obtained the plasmids from the OPU isolates. However, after retransformation, these plasmids failed to confer robust growth to E. coli JA221 on DFP- or DIPP-containing plates. Furthermore, plasmid curing of the OPU isolates did not affect the OPU phenotype, indicating that DFP and DIPP utilization was the result of a spontaneous mutation on the chromosomes of the OPU strains and was not due to a plasmid-borne A. haloplanktis gene.
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Cloning. In order to understand the nature of the mutation, experiments were conducted to identify the mutated gene. We assumed that the mutation was a dominant gene mutation, and a genomic library was constructed from the DB mutant in a high-copy number-plasmid (pUC19) and was used to transform E. coli wild-type strain JA221. Transformants were screened on DIPP-containing plates for the DB mutant growth (OPU) phenotype (i.e., vigorous growth on the DIPP-containing medium and weak growth on the Pi-deficient medium). Six positive clones were identified.
Subcloning experiments performed with selected restriction endonucleases (PvuII, EcoRI, BamHI, HindIII, PstI, BglI, and EcoRV) revealed the possibility that there were two different genes. Five of the clones (pB1, pB3, pB12, pE2, and pF1) appeared to represent the same contiguous area of genomic DNA, and two of these clones (pB12 and pE2) generated identical restriction fragment (Fig. 1A). The possible second gene was represented by a single isolate, pB9 (Fig. 1B). pF1, the smallest of the five clones in the first set of genomic clones, was selected for further analysis (Fig. 1A). Two subclones of pF1 (pF
RL and pF
RR) were tested, and a 1.9-kb fragment of pF
RR
was found to contain the minimal sequences needed to confer vigorous
growth on DIPP-containing plates to wild-type E. coli strain
upon transformation. Flanking regions of pF
RR were sequenced and
were found to correspond to a part of the previously reported
phnCDEFGHIJKLMNOP operon (6, 33) that is
involved in the transport of phospho compounds. The pF
RR construct
contained the complete phnE and partial phnF
ORFs. In order to ascertain which of these two genes was the gene of
interest, a third construct was made from the pF1 clone; in this
construct phnF, phnG, and part of phnH
were deleted without affecting the phnE gene. Upon transformation, the resulting pF
F construct (Fig. 1A) was found to
confer the vigorous growth phenotype on DIPP-containing plates to
E. coli wild-type strain JA221. Therefore, we concluded that phnE was the gene of interest.
To identify the second gene conferring the OPU phenotype, regions of
the pB9 insert were sequenced. We found that this clone contained four
previously identified ORFs (glpT, glpA,
glpB, and glpC) belonging to two different
operons (7, 12, 38). The glpABC operon encodes
the anaerobic sn-glycerol-3-phosphate dehydrogenase (12), while the divergently transcribed glpT gene
encodes a transport protein for sn-glycerol-3-phosphate
(11, 12, 24, 26, 31). To identify which of the
glp genes conferred the OPU phenotype, a subclone construct
was obtained in which glpBC and all but 259 bp of
glpA were deleted from the pB9 clone without affecting the
glpT gene (Fig. 1B). The resulting pqTa construct in the
high-copy-number pUC19 plasmid was found to confer vigorous growth on
DIPP-containing plates to E. coli wild-type strain JA221 upon transformation. Therefore, we concluded that glpT was
the second gene of interest.
The phnE gene has been identified in E. coli K-12
as a cryptic gene which can undergo spontaneous activation via an 8-bp
deletion in the triple 8-bp tandem repeats present inside its ORF
(33). To ascertain whether the DB mutant strain was the
result of such a mutation, both the wild-type and mutant genomic DNAs
encompassing the triple repeat were sequenced. Sequencing confirmed
that the phnE gene in the DB mutant underwent spontaneous
activation by excision of the same 8-bp unit.
To determine whether the OPU DB mutant contained an additional mutation
in glpT, the complete glpT ORF of this strain
(including the upstream 233-bp regulatory region) was sequenced. The
sequence obtained was found to be identical to the previously reported glpT gene sequence (7, 12). This demonstrated
that the OPU phenotype associated with glpT was not due to a
spontaneous mutation in the gene. Furthermore, to test whether the OPU
phenotype conferred by the glpT gene was due to an enhanced
copy number of the gene, glpT genes (including upstream 176 bp of the regulatory region) were obtained from wild-type E. coli JA221 and OPU mutants and were subcloned into both the
high-copy-number pUC19 vector and the low-copy-number pWSK29 vector.
The resulting constructs were used to transform wild-type
E. coli JA221 and were subsequently tested for the presence
of the OPU phenotype. All transformants harboring the glpT
gene on the high-copy-number pUC19 plasmid exhibited robust growth on
DIPP-containing plates (Fig. 2C). In comparison, all transformants
harboring the glpT gene on the low-copy-number pWSK29
plasmid (six to eight copies per cell [48]) exhibited weak growth on DIPP-containing plates (unpublished data). These results
suggest that the OPU phenotype conferred by glpT on the pUC19 plasmid was not the result of a mutation but was due to the high
level of expression of the gene carried on the multicopy vector.
Utilization of organophosphorus sources.
To ascertain the
effects of the glpT and active phnE genes on the
metabolism of various organophosphates, the growth of the mutant and
the growth of wild-type strain JA221 transformed with these two genes
were compared with the growth of the wild-type strain transformed with
the appropriate vector alone on media containing different
organophosphates. The cells containing an active phnE gene
(the DB mutant and the pF
RR E. coli transformant) metabolically broke down the chromogenic phosphorus source
X-Pi, producing a characteristic blue metabolite
(13). The wild-type strain transformed with the active
phnE gene (the pF
RR construct) was phenotypically
identical to the E. coli DB mutant on
X-Pi-containing media. In comparison, the strains lacking
the active phnE gene (the wild-type strain and alone the
wild-type strain transformed with the multicopy glpT gene)
showed no evidence of X-Pi metabolism. Similar results were
observed on the X-Pi-containing plates and when the
X-Pi-containing liquid medium was supplemented with a growth-limiting concentration (0.1 mM) of Pi
(13). Thus, the mutated phnE gene facilitates
utilization of X-Pi, whereas the multicopy glpT
gene does not.
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DISCUSSION |
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This study demonstrated that utilization of low concentrations of DIPP can be enhanced through activation of phnE or overexpression of glpT. phnE has been shown to be a cryptic gene in E. coli K-12 whose spontaneous activation is the result of a mutation (33, 47, 49) that deletes a single 8-bp unit from a triple 8-bp repeat in the coding region (33). The resulting frameshift not only alters downstream amino acids but also annuls the early stop codon of the wild-type gene (33), resulting in elongation of the PhnE protein from 189 to 259 amino acids. Sequencing confirmed that the E. coli JA221 mutation isolated in this study also represents this 8-bp unit deletion from the wild-type genome. It is noteworthy that the phnE gene is functional in the wild-type E. coli B strain (6) due to the absence of the same 8-bp insert (33). Slipped-strand mispairing during DNA synthesis in a recA E. coli strain (29) is thought to be the mechanism by which this 8-bp unit insertion or deletion might arise (33).
The metabolic breakdown of X-Pi and the enhanced utilization of DIPP in strains with active phnE do not reflect increased activity of X-Pi- and DIPP-hydrolyzing enzymes in these organisms. The transformations with the active phnE gene did not affect the expression of phosphodiesterase and phosphomonoesterase in E. coli wild-type strain JA221, as judged from the enzymatic activities in the crude extracts. It should be noted that the E. coli strain used in this study, JA221, like strains used in previous studies (33, 36), appears to be defective in the periplasmic alkaline phosphatase (phoA) gene since it failed to metabolize X-Pi in the absence of active phnE. X-Pi is normally broken down in other strains of E. coli by the phoA gene product (36, 46). Thus, consistent with previous reports (6, 36), phnE operates at the level of phosphorus compound transport and not phosphorus compound enzymatic breakdown.
The likelihood that phnE codes for an integral membrane protein was demonstrated by a Kyte-Doolittle hydropathy plot (23), which showed that the PhnE protein is quite hydrophobic (6) and has six putative transmembrane segments (unpublished data). This transmembrane arrangement is the pattern that is typical of the integral membrane proteins of the binding protein-dependent transport systems, where they have been found to form dimers (15). Therefore, since the PhnE protein is the single integral membrane component, it presumably functions as a homodimer.
All of the phospho compounds previously shown to be affected by the PhnCDE system (36, 37) have at most only a single substituent at the phosphorus atom (48a). Our studies indicate that active phnE is also involved in enhancing the utilization of DIPP, which has two substituents at the phosphorus atom. This suggests that DIPP may be converted to isopropyl phosphate (IPP) (monosubstituted at the phosphorus atom) by a periplasmic phosphodiesterase prior to its transport into the cytoplasm, where it is converted to Pi by a cytoplasmic phosphatase(s). Alternatively, it is equally plausible that the PhnCDE system directly transports DIPP. If this is the case, the entire degradation of DIPP to yield Pi is a cellular process that involves a cytoplasmic or cytoplasmic membrane phosphodiesterase(s) and a cytoplasmic phosphatase(s).
It is noteworthy that the phnE gene is functional in most E. coli strains and in bacterial species belonging to other genera of the family Enterobacteriaceae, including the genera Citrobacter, Enterobacter, Hafnia, Klebsiella, and Serratia (49). Therefore, the PhnCDE transport system is likely to facilitate the mineralization of DFP, DIPP, and other OPCs by a number of environmental bacteria.
We also observed that E. coli utilization of low concentrations of DIPP could be enhanced by the multicopy glpT gene encoding sn-glycerol-3-phosphate permease (2, 11, 12, 24, 26, 30, 31). The observed vigorous growth on DIPP conferred by glpT to E. coli was not due to a glpT gene mutation but was due to the high level of expression of the gene carried on the high-copy-number pUC19 plasmid. In E. coli, glpT is normally repressed by the glycerol-3-phosphate-inducible GlpR repressor (25, 27). In addition, the gene is under catabolite repression (25, 27, 30); i.e., it is negatively regulated by glucose. Therefore, in a glucose-containing and glycerol-deficient medium, such as the medium used in our study, the level of expression of glpT is expected to be low, resulting in a low basal level of transport. This basal level of transport may in fact account for the slow but detectable growth of the wild-type E. coli strain (lacking active phnE) at low DIPP concentrations and its more robust growth at high DIPP concentrations (Fig. 3 and Table 1).
The presence of glpT on a low-copy-number plasmid (six to eight copies per cell [48]) did not enhance utilization of DIPP (Fig. 3D and Table 1). It appears that a very high number of copies of glpT is needed to titrate the repressor molecules to an extent that allows sufficient expression of glpT to affect its function significantly.
At low DIPP concentrations, both the active phnE gene and the multicopy glpT gene enhanced E. coli growth. However, at high DIPP concentrations, the multicopy glpT gene inhibited E. coli growth, while the active phnE gene had no effect. It appears that while the glpT product is capable of transporting elevated toxic levels of its substrate, the phnE product transports only low concentrations of the phosphorus compound. This difference could be the result of differential regulation of the respective transport systems. PhnE is part of the multicomponent transport system that is the product of phnCDE, the expression of which is under control of the phosphate (pho) regulon (33, 35, 37, 50). During Pi limitation, the pho regulon is derepressed, resulting in increased expression of the Phn transport proteins and uptake of the substrate (50). After the phospho compound substrate is transported into the bacterial cytoplasm, it is metabolized, and Pi is released. The released Pi then interacts with the pho box of the phn operon, downregulating expression of the phnCD chromosomal genes and resulting in a decrease in further substrate uptake. Such feedback control by the internally released Pi has been observed for another pho-regulated, Ugp (uptake of glycerol phosphate) transport system (4, 53). In contrast, the GlpT transport system consists of a single protein oligomer (26, 31) that is independent of pho. Therefore, the Pi released after phospho compound substrate uptake by the glpT system cannot downregulate glpT gene expression, which results in continued uncontrolled accumulation of higher levels of the substrate and consequent growth inhibition.
In another scenario, the observed effect may be due to differences in the substrate specificities of the Phn and GlpT transport systems. One system may preferentially transport DIPP, whereas the other preferentially transports IPP, the periplasmic diesterase metabolite of DIPP. However, it is thought that both systems are capable of transporting IPP (and perhaps DIPP also), which is a phosphomonoester, since the natural substrates for both Phn and GlpT are phosphomonoesters (24, 26, 30, 31, 36).
The glpT and phnE gene products differs with regard to known substrate specificities in E. coli. In addition to sn-glycerol-3-phosphate, the glpT gene product can also transport 3,4-dihydroxybutyl 1-phosphonate, fosfomycin, arsenate, and Pi (30), whereas the phnE gene product is thought to be the integral membrane component of the binding protein-dependent phosphonate transporter, which can also transport phosphites, Pi esters, and Pi (6, 33, 35, 37, 49, 51). We also observed functional differences between glpT and phnE when X-Pi was used as a substrate. The glpT gene product appeared to be incapable of X-Pi transport, as demonstrated by its inability to facilitate the metabolic breakdown of X-Pi, whereas the active phnE plays an essential role in this process (13). Transport studies with labeled IPP and DIPP are needed to establish the functions of phnE and glpT gene products with regard to these two substrates.
Nevertheless, our studies suggest that glpT and phnE represent overlapping, but not redundant, systems for the transport of OPCs in E. coli.
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ACKNOWLEDGMENTS |
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We thank John Scocca and James Yager for their advice throughout this project.
This work was supported by the U.S. Army Edgewood Research, Development and Engineering Center.
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FOOTNOTES |
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* Corresponding author. Mailing address: Research and Technology Directorate, U.S. Army Edgewood Research, Development and Engineering Center, Aberdeen Proving Ground, MD 21010-5423. Phone: (410) 671-2580. Fax: (410) 612-8661. E-mail: ixelashv{at}cbdcom.apgea.army.mil.
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