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Applied and Environmental Microbiology, September 1998, p. 3368-3375, Vol. 64, No. 9
0099-2240/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Biodegradation of Atrazine by Agrobacterium
radiobacter J14a and Use of This Strain in Bioremediation of
Contaminated Soil
J. K.
Struthers,1,
K.
Jayachandran,2,
and
T. B.
Moorman3,*
Departments of
Microbiology1 and
Agronomy,2 Iowa State University, and
National Soil Tilth Laboratory, Agricultural Research
Service, U.S. Department of Agriculture,3 Ames,
Iowa 50011
Received 9 March 1998/Accepted 1 July 1998
 |
ABSTRACT |
We examined the ability of a soil bacterium, Agrobacterium
radiobacter J14a, to degrade the herbicide atrazine under a
variety of cultural conditions, and we used this bacterium to increase the biodegradation of atrazine in soils from agricultural chemical distribution sites. J14a cells grown in nitrogen-free medium with citrate and sucrose as carbon sources mineralized 94% of 50 µg of
[14C-U-ring]atrazine ml
1 in
72 h with a concurrent increase in the population size from 7.9 × 105 to 5.0 × 107 cells
ml
1. Under these conditions cells mineralized the
[ethyl-14C]atrazine and incorporated approximately 30%
of the 14C into the J14a biomass. Cells grown in medium
without additional carbon and nitrogen sources degraded atrazine, but
the cell numbers did not increase. Metabolites produced by J14a
during atrazine degradation include hydroxyatrazine, deethylatrazine,
and deethyl-hydroxyatrazine. The addition of 105 J14a cells
g
1 into soil with a low indigenous population of atrazine
degraders treated with 50 and 200 µg of atrazine g
1
soil resulted in two to five times higher mineralization than in
the noninoculated soil. Sucrose addition did not result in significantly faster mineralization rates or shorten degradation lag
times. However, J14a introduction (105 cells
g
1) into another soil with a larger indigenous
atrazine-mineralizing population reduced the atrazine degradation lag
times below those in noninoculated treatments but did not generally
increase total atrazine mineralization.
 |
INTRODUCTION |
Use of atrazine
(2-chloro-4-ethylamino-6-isopropylamino-s-triazine) in the
United States was estimated in 1991 to be 34 to 41 million kilograms
annually (30). Contamination of soil from pesticide mixing,
loading, storage, and rinsing at agricultural chemical dealerships in
the Midwest is a concern due to potential contamination of surface
water and groundwater. The U.S. Environmental Protection Agency (EPA)
reported that atrazine has been found in the groundwater of
approximately 25 states due to both point and nonpoint sources. In a
1987 study of Iowa public water systems, 16 of the 18 wells with
detections of pesticides, including atrazine, were located within 1,000 feet of an agricultural chemical dealership (12). High
levels of pesticides and nitrate in soils, surface water, and
groundwater were found at 28 dealerships in Iowa, with maximum atrazine
concentrations of 1,100 µg g
1 in soil, 16 µg
liter
1 in surface water, and 1,500 µg
liter
1 in groundwater (14), which are well
above the U.S. EPA maximum contaminant level of 3 µg
liter
1 for drinking water. Low-cost strategies for
bioremediation of atrazine and other pesticides in soil and groundwater
at agrichemical dealership sites are needed.
The degradation of atrazine occurs predominantly by biological
processes, including N-dealkylation, dechlorination, and
ring cleavage. Atrazine biodegradation can be initiated by
N-dealkylation of the ethyl or isopropyl side chains to
produce deethylatrazine (DEA) or deisopropylatrazine (DIA) (3, 6,
22-24). Dechlorination has been reported as an early step in
atrazine metabolism (6, 20), and two different
s-triazine hydrolase enzymes (11, 25) have been
characterized. In some microorganisms, complete biodegradation of
atrazine to ammonia and CO2 has been obtained (19, 28, 32). These previous studies show a wide variation in the kinetics and extent of atrazine degradation and the ability of bacteria to grow
on atrazine. In addition, the stimulatory or inhibitory effects of
additional carbon or nitrogen sources on atrazine degradation varies
among the bacteria described in the literature. An understanding of
these factors is necessary in order to improve the effectiveness of
these bacteria in bioremediation applications.
Previous studies have shown that atrazine-degrading bacteria applied as
single strains or as consortia can increase degradation of atrazine in
soil, but these treatments vary in their effectiveness. Soil
contaminated with 1,500 µg of atrazine g
1 was
inoculated with the Pseudomonas strain ADP, resulting in the
degradation of approximately 17% of the atrazine (19).
Addition of citrate to the soil increased the degradation to 70% of
the aged atrazine. Addition of a Pseudomonas strain resulted
in mineralization of over 60% of 10 µg of atrazine g
1
soil in 49 days and an atrazine half-life of 1 day (33).
However, the addition of the same strain to another low-pH soil and a
soil with a high organic-matter content resulted in much slower
atrazine degradation, with half-lives of 19 and 22 days, respectively. Mixed cultures of microorganisms have also increased the biodegradation of atrazine when added to soils containing relatively small amounts of
atrazine (3, 4).
The objectives of the present study were to determine the factors that
govern the atrazine biodegradation by a newly isolated bacterium and to
determine its potential effectiveness in degrading atrazine in soil. We
describe here the isolation and characterization of Agrobacterium
radiobacter J14a, a strain which is capable of utilizing atrazine
as a sole nitrogen source. Experiments were also conducted to determine
the effects of secondary carbon and nitrogen substrates on atrazine
degradation in culture and in soils contaminated with atrazine.
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MATERIALS AND METHODS |
Chemicals.
Atrazine, DEA, DIA, deethyldeisopropylatrazine
(DEDIA), simazine, and cyanazine were purchased from ChemService, West
Chester, Pa. Propazine was obtained from Riedel-de Haen, Seelze,
Germany. Ametryne and prometon were obtained from the EPA, Research
Triangle Park, N.C. All chemicals exceeded 96% purity and were used
without further purification. Hydroxyatrazine (HA),
deethyl-hydroxyatrazine (DEHA), and deisopropyl-hydroxyatrazine (DIHA)
were obtained from Robert Lerch (USDA-ARS Cropping Systems and Water
Quality Research Unit, University of Missouri, Columbia, Mo.). The
[14C-U-ring]atrazine (18.96 mCi
mmol
1, 98% radiochemical purity) and
[N-ethyl-14C]atrazine (13.18 mCi
mmol
1, 98% radiochemical purity) were purchased from
Sigma Chemical Co., St. Louis, Mo.
Enrichment and isolation.
Surface soil collected from an
atrazine-treated corn field near Sheldon, Nebraska, served as the
inoculum for nitrogen-limited enrichment cultures. This enrichment
medium, designated BMA, contains a basal minimal salts medium
supplemented with 1 g each of sodium citrate and sucrose, 20 ml of
vitamin solution (5 mg of thiamine, 2 mg of d-biotin, 2 mg
of folic acid, 10 mg of nicotinamide, and 10 mg of pyridoxine per
liter), 20 ml of trace elements solution (21), and 50 mg of
atrazine in 1 liter of deionized water. After several transfers into
fresh BMA liquid medium, a mixed culture was obtained. Due to
production of large amounts of polysaccharide on BMA and 0.5 strength
tryptic soy agar (TSA) (Difco Laboratories, Detroit, Mich.) plates, it
was difficult to obtain a pure culture by streaking for isolation. We
used the Percoll (Pharmacia Fine Chemicals, Piscataway, N.J.) density
centrifugation method (27) to separate the organisms in the
culture. Isolates from each of three bands were screened for the
ability to degrade atrazine, and the atrazine-degrading isolate J14a
was used in further experiments. A second atrazine-degrading bacterium
was also isolated, which we do not describe in this report.
Isolate identification.
Fatty acid profile analysis of the
isolate was performed by Microcheck, Inc., Northfield, Vt. Microcheck
subcultured the isolate onto TSA, incubated the plates overnight at
28°C, harvested and extracted the cells, and analyzed the cellular
fatty acids of the isolate by high-resolution gas chromatography. The
isolate's profile was compared for similarity to the profiles of their
1,700-strain database. The substrate utilization of J14a was examined
by using Biolog plates (Biolog, Inc., Hayward, Calif.). The inoculum
for the Biolog plates was grown on TSA overnight and, after
inoculation, the plates were incubated for 24 h in the dark at
30°C. The substrate utilization patterns were determined by
absorbance measurements with an automated microplate reader and
compared with the Biolog strain database. The results obtained from the
fatty acid and Biolog identification system analysis were confirmed by
tests for 3-ketolactose production, carrot tumorigenesis, Kovac's
oxidase, catalase, and urease. Flagellum numbers and position were
observed under a transmission electron microscope by the
phosphotungstic acid negative-staining technique.
Inoculum preparation.
Unless otherwise stated, the inoculum
for all of the experiments was prepared by growing bacteria in 50 ml of
either BMA or 0.5-strength tryptic soy broth (TSB) for 3 days at 28°C
on a rotary shaker at 120 rpm. Cultures were pelleted by centrifugation
at room temperature at 7,000 × g for 10 min. Cells
were rinsed twice with 20-ml aliquots of sterilized 0.0125 M phosphate
buffer (pH 7.2) and quantified by plate count techniques.
Mineralization and degradation.
Mineralization of
[14C-U-ring]atrazine was used to confirm the
atrazine-degrading ability of the isolate. We prepared triplicate biometer flasks (Bellco, Vineland, N.J.) containing 50-µg
ml
1 and 1,500 Bq of
[14C-U-ring]atrazine in 50 ml of BMA. Three
uninoculated controls were also monitored for
14CO2 production. At each sampling time the
entire 10-ml volume of NaOH in the biometer sidearm was removed and
replaced with fresh NaOH. A 3-ml aliquot of the NaOH was transferred to
a scintillation vial with 15 ml of Ultima Gold scintillation cocktail
(Packard Instrument Company, Meriden, Conn.) and analyzed with a
Packard 1600 liquid scintillation counter (LSC). The radioactivity
counted by the LSC was corrected for quenching and background
radioactivity. The final degrader population in each flask was
determined by plating. Additional flasks of BMA containing 50 µg of
unlabeled atrazine ml
1 were monitored for atrazine
concentration and metabolite production by high-pressure liquid
chromatography (HPLC) and J14a cell counts. The Monod and logistic
growth models (29) were used to describe atrazine
mineralization:
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where S0 is the initial substrate
concentration (in micrograms per milliliter), X0
is the amount of substrate (in micrograms per milliliter) required to
produce the initial population density equal to
B0 (the initial biomass), and
X0 = B0/Y
(yield). The rate constant k4 is equivalent to
µmax/Ks, where µmax
is the maximum specific growth rate (per hour) and
Ks is the half-saturation constant (i.e., the
substrate concentration [in micrograms per milliliter] when µ is
half of µmax). An additional parameter,
, is needed to
estimate S from measures of 14CO2
respired and 14C in the medium;
is the constant
fraction of radiolabeled substrate incorporated into the cells.
Parameters for these models were estimated by nonlinear regression
analysis (29).
The incorporation of atrazine into J14a cells was determined with
[ethyl-14C]atrazine. BMA medium was prepared with or
without C sources (vitamins, sucrose, and citrate) containing 50 µg
and 3,750 Bq of [ethyl-14C]atrazine ml
1 and
inoculated as described previously. Three uninoculated controls were
also included. The production of 14CO2 was
monitored, and the 14C in the cells was sampled at 24-h
intervals by removing 1 ml of medium from each inoculated flask and
filtering it through a 0.22-µm (pore size) nylon filter. The filter
was rinsed with 10 ml of phosphate buffer. The filter was placed in a
scintillation vial with 15 ml of cocktail and counted with the LSC to
determine the cell-associated radioactivity. An additional 200 µl of
the medium was also removed to determine the total 14C in
the medium. At the end of the experiment, approximately 5% of the
radioactivity remained in the medium. This cell-free, filtered medium
was passed through a cyclohexyl, 1,000-mg solid-phase extraction cartridge (United Chemical Technologies, Inc., Horsham, Pa.) to concentrate the analytes. The columns were eluted with 2 ml of methanol, and the atrazine and metabolite concentrations were determined by HPLC.
In order to determine the metabolites produced during atrazine
degradation, J14a cells (approximately 10
10 CFU
ml
1) were incubated with atrazine, and the medium was
analyzed by
HPLC for metabolic products. The inoculum was grown in BMA
or
0.5 strength TSB (400 ml) in a rotary shaker at 120 rpm and 28°C
for 72 h. The cells were centrifuged, washed with phosphate
buffer,
and resuspended in BMA medium. TSB- and BMA-grown cells (2.5 ml)
containing approximately 10
10 CFU ml
1
each were dispensed into sterilized 25-ml glass centrifuge tubes,
which
were then treated with 50 µg of atrazine ml
1 (with or
without [
14C-U-
ring]atrazine) and incubated on
a rotary shaker at 120 rpm
and 28°C. Four tubes for each cell type
were sacrificed at 4 and
24 h. Samples were diluted to 100 ml with
water, and the cells
were lysed by sonication for 6 min at a 50% duty
cycle. Cellular
debris was pelleted by centrifugation at 5,000 rpm for
20 min.
The supernatant was diluted to 250 ml with water, and 1 M
KH
2PO
4 (pH 2.5) was added to obtain a final
solution concentration of
0.05 M KH
2PO
4.
Samples were passed through cyclohexyl (C
8), 1,000-mg
solid-phase extraction cartridges (United Chemical) and eluted
with 3 ml of methanol to quantify the atrazine, DEA, DIA, and
DEDIA. The
aqueous phase was then passed through an SCX 3-ml Bond
Elut
cation-exchange extraction cartridge (Varian, Harbor City,
Calif.) and
eluted with 3 ml of 75% 0.5 M KH
2PO
4 (pH
7.5)-25%
acetonitrile to analyze for the presence of HA, DEHA, and
DIHA.
Each sample was filtered through a 0.22-µm-pore-size filter
into
an HPLC vial. Basal minimal salts medium was spiked with 1-µg
ml
1 solutions of HA, DEHA, and DIHA, to determine the
extraction
efficiency. Samples were sent to Robert Lerch for HPLC
analysis
for hydroxylated metabolite production (
18). The
radiolabeled
samples were analyzed by Waters HPLC with a Radiomatic
radioactivity
detector (Packard Instruments) for atrazine and the
chlorinated
metabolites DEA, DIA, and DEDIA.
BMA medium was modified to assess the requirements for J14a growth and
atrazine metabolism. Treatments were as follows: (i)
minimal salts
medium amended with the carbon sources, trace elements,
and vitamins,
but without any atrazine; (ii) basal minimal salts,
carbon sources,
trace elements, and atrazine as the sole N source
(no vitamins); (iii)
carbon- and nitrogen-limited medium containing
only the basal minimal
salts, trace elements, vitamins, and atrazine;
(iv) complete BMA medium
with 5 g of NH
4NO
3 liter
1;
or (v) basal minimal salts medium, atrazine, vitamins, and trace
elements, without the carbon sources. Treatments were prepared
in
triplicate and were incubated for 5 days on the rotary shaker
at 120 rpm and 28°C in a completely randomized design. Initial
and final
atrazine concentrations were determined by HPLC. Initial
and final
populations in each flask were determined by plating.
Experiments were conducted to determine if organic nitrogen sources
inhibit atrazine degradation. Mineralization of atrazine
in BMA and TSB
media was compared with J14a cells grown in 0.5-strength
TSB medium
through three successive 24-h transfers prior to inoculation.
In both
media, the atrazine concentration was 50 µg ml
1,
including 1,500 Bq of [
14C-U-
ring]atrazine.
Sampling occurred as described previously.
The initial and final J14a
populations were determined by the
drop plate technique.
In order to determine if the atrazine-degrading enzymes were retained
with the cells or released into the growth medium, a
cell extract of
J14a was prepared by growing 50 ml of J14a in
BMA medium, centrifuging
the culture at 7,000 ×
g for 15 min to
pellet the
intact cells, and filtering the supernatant through
a
0.22-µm-pore-size disposable sterile bottle-top filtering apparatus
(Corning Glass Works, Corning, N.Y.). A 5-ml portion of the cell
extract was added to triplicate flasks containing 50 ml of BMA
medium
supplemented with 50 µg of atrazine ml
1 and 100 µg of
chloramphenicol ml
1 to inhibit the growth of any cells
that passed through the filter.
The flasks were incubated on a rotary
shaker at 120 rpm and 28°C
for 120 h. Initial and final atrazine
concentrations were determined
by HPLC.
Another experiment was performed to determine if the atrazine-degrading
enzymes are produced constitutively or are induced.
BMA medium amended
with 50 µg of atrazine ml
1 and 100 µg of
chloramphenicol ml
1 was inoculated with J14a cells grown
in 0.5-strength TSB through
three successive 24-h transfers and
incubated for 120 h. Concentrations
of herbicide were determined
by HPLC. The J14a population sizes
were determined by plating.
Substrate range.
Triplicate flasks containing minimal salts
medium were treated with vitamins, carbon sources, trace elements, and
one of the following herbicides: atrazine, 50 µg ml
1;
ametryne, 5 µg ml
1; cyanazine, 50 µg
ml
1; prometon, 5 µg ml
1; propazine, 5 µg ml
1; or simazine, 1 µg ml
1. Each
flask was inoculated with approximately 5 × 107 cells
ml
1 of J14a and incubated on the rotary shaker for
120 h. Initial and final herbicide concentrations were determined
by HPLC.
HPLC analysis.
HPLC was performed with a Waters HPLC system
with a model 490E UV detector operated at 220 nm and a Nova-Pak
C18, 10-cm, radially compressed column. Deionized water and
acetonitrile (ACN) were used to separate atrazine, DEDIA, DIA, and DEA
starting at 25% ACN, followed by a linear gradient to 75% ACN at 10 min, then returning to 25% ACN by 13 min, and holding those conditions
until 15 min at 1.8 ml min
1. Calibration standards
contained DEDIA, DIA, DEA, and atrazine with retention times of 1.4, 2.5, 4.1, and 9.3 min, respectively. A modified gradient was used to
determine the concentrations of the additional s-triazines
used in the substrate range experiment. The mobile-phase flow rate was
increased to 2 ml min
1. The gradient started at 25% ACN,
reached 75% ACN at 8 min, held at those conditions for 4 min, ramped
down to 25% ACN-75% water by 14 min, and held at those conditions
for 5 min. Retention times for simazine, cyanazine, atrazine, prometon,
ametryne, and propazine were 7.0, 7.1, 7.6, 9.5, 9.9, and 10.0 min,
respectively. The [14C]atrazine HPLC method starts with
25% ACN-75% water for 3 min, changing to 75% ACN by 11 min and back
to 25% ACN by 16 min, and holds those conditions until 20 min at a
flow rate of 1.0 ml min
1. Atrazine and metabolites were
quantified by using a Packard RAM detector. Counting efficiency
and background were determined with standards prepared from
[14C]atrazine solutions.
Inoculation and degradation in soil.
Soil was collected at
two agricultural chemical dealerships in Iowa by removing the top 5 cm
of soil from locations which appeared to be impacted by the
dealerships' pesticide spills and runoff. These dealerships are
code-named Alpha and Bravo, and the soils are referenced by the same
names. The soil from Alpha had the following characteristics: a sandy
loam texture with 75% sand, 17% silt, and 8% clay; 3.2% organic C
and 0.07% total N; and a pH of 7.9 (2:1 slurry). The soil from Bravo
was a loamy sand with 78% sand, 18% silt, and 4% clay; 2.4% organic
C and 0.05% total N; and a pH of 6.5 (2:1 slurry). Soil at both sites consisted of mixtures of soil, sand, and limestone that had been used
to maintain a surface at the site. Soils were passed through a 4-mm
sieve and 50-g (dry weight basis) portions of soil were adjusted to
10% moisture in Bellco biometer flasks. Atrazine-mineralizing populations were determined with
[14C-U-ring]atrazine as an N source in a
most-probable-number (MPN) technique (17) prior to the start
of the experiment. Each biometer was treated with atrazine solutions
providing 50 or 200 µg of atrazine g
1 of soil and 3,337 Bq of [14C-U-ring]atrazine. After a thorough
mixing, flasks were incubated at 25°C in the dark. After 3 days of
incubation to allow for herbicide sorption to the soil, three flasks at
each herbicide concentration were treated with 1% (wt/wt) sucrose,
105 J14a cells g
1 of soil, or both sucrose
and J14a and incubated for 60 more days. The
14CO2 produced was measured by LSC analysis of
the NaOH traps. Additional flasks treated with atrazine (but no
14C), sucrose, and J14a were prepared as described and
incubated in a similar way to monitor the atrazine-mineralizing
populations by the MPN technique.
Also at day 63, a 10-g subsample from each biometer flask was extracted
twice with 30 ml of methanol. Methanol was added to
the soil; the
samples were then shaken at 190 rpm on a reciprocating
shaker for
1 h, allowed to sit for 24 h, and shaken again for
30 min.
The soil was removed from the methanol by centrifugation
and then
reextracted. Total
14C in combined methanol extracts was
determined by LSC. Extracts
were analyzed by HPLC to determine
atrazine, DEA, DIA, and DEDIA
concentrations. Duplicate 1-g
aliquots of dried, ground soil were
combusted with an OX500
biological oxidizer (R. J. Harvey Instrument
Corporation,
Hillsdale, N.J.) to determine residual
14C in the soil
after extraction.
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RESULTS |
Identification.
J14a is a gram-negative, motile, rod-shaped
bacterium with several peritrichous flagella visible under
transmission electron microscopy. Fatty-acid analysis of J14a
showed an excellent match (similarity index = 0.629) with
A. radiobacter and a good match (similarity index = 0.450) with A. rubi. J14a also matched the Biolog
profile for A. radiobacter. When grown on TSA medium,
J14a produced generally round, beige, mucoid, opaque, smooth-edged colonies that became rough edged with age. J14a showed positive reactions for catalase, 3-ketolactose production, urease, and Kovac's
oxidase test. The 3-ketolactose production is unique to two biovars in
the genus Agrobacterium, and this positive reaction by J14a
is fairly strong proof that the isolate belongs to the genus
Agrobacterium. J14a was negative for the carrot
tumorigenesis test.
Metabolism and growth.
J14a mineralized approximately 94% of
the [14C-U-ring]atrazine in BMA medium after a
lag time of approximately 12 h (Fig. 1). Atrazine disappearance
and cell growth (Fig. 1) coincide with 14CO2 appearance. Cell growth levels off at
approximately 72 h, which coincides with atrazine concentration
decreasing below the HPLC detection limit of 25 ng ml
1.
Mineralization of [14C-U-ring]atrazine in an
experiment similar to that reported in Fig. 1 (data not shown) was
described slightly better by the Monod model than by the logistic
model, based on residual sums of squares of 1.87 and 21.1, respectively. Parameter estimates for both models are presented in
Table 1. Ring mineralization was nearly
complete (94%) with little carbon incorporation into microbial biomass (estimated to be 6% at maximum), while the model value of 0.03 µg of C µg
1 substrate for
is equivalent to 1.5%
C incorporated. Differences between the observed and predicted
estimates of 14C in the biomass may be due to incomplete
metabolism of atrazine or experimental error (measurement error or
incomplete mass balance), because incorporation of the triazine
ring C would not be expected. Other microorganisms metabolize the
triazine ring to urea, then to CO2 and
NH4+ (10, 28). The Monod parameter
Ks was estimated to be 38 µg ml
1, but there is significant uncertainty in this
estimate. This may be due to the use of supersaturated solutions
of atrazine (50 µg ml
1), which exceed the water
solubility of 33 µg ml
1. Above this concentration
atrazine forms microprecipitates and resolubilization may limit
biodegradation. However, the initial concentration estimates from
the models (S0) were near the
measured value of 50 µg ml
1, which suggests that the
entire amount of atrazine is available to the organisms.

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FIG. 1.
Degradation of 50 µg of
[14C-U-ring]atrazine ml 1 in
N-limited medium by strain J14a. Atrazine remaining in the medium (A)
is shown in relation to cell density (B) and
14CO2 production (C).
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The metabolites produced by J14a during atrazine degradation were DEA,
DEHA, and HA (Fig.
2, Table
2), based on retention
times with
detection by UV and
14C measurement. An unknown
14C-labeled compound consistently eluted after
atrazine during the
HPLC analysis. The compounds DIA, DEDIA,
and DIHA were not detected.
No apparent difference in the amount of
atrazine degraded or metabolites
produced was found between samples
taken at 4 h versus those taken
at 24 h. Cells grown in TSB
produced more HA than cells grown
in BMA, whereas the concentrations of
DEHA and DEA produced were
essentially the same for cells grown in
either medium.
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TABLE 2.
Atrazine and metabolites recovered 4 h after
the addition of [14C-U-ring]atrazine
to cultures of A. radiobacter J14a
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In the medium with 50 µg of
[
14C-U-
ring]atrazine ml
1 as the
sole C and N source, only 11% of the atrazine was mineralized by
J14a,
populations declined slightly from 7.6 × 10
5 to
3.1 × 10
5 CFU ml
1, and 9.4 ± 0.9 µg of atrazine ml
1 remained in the medium after
120 h. Atrazine degradation and
cell growth in BMA medium
containing atrazine as the sole N source
(no vitamins) were similar to
that shown in Fig.
1. Only limited
growth was obtained in medium
without any N source, showing that
J14a does not fix N
2
under these conditions. The addition of KNO
3,
(NH
4)
2SO
4, or
NH
4NO
3 in amounts far above those required for
cell
growth to minimal salts medium with sucrose and 50 µg of
[
14C-U-
ring]atrazine ml
1
resulted in growth of cells, complete loss of atrazine from the
medium,
and mineralization reaching approximately 60% in 90 h
for all
three inorganic N sources (data not shown).
Strain J14a was also able to degrade atrazine in the presence of
exogenous-N-containing substrates supplied in TSB. Cells
grown through
three successive transfers in TSB without atrazine
and then
inoculated into BMA medium mineralized an average of
88% of the
[
14C-U-
ring]atrazine and grew from
5.1 × 10
7 to 2.6 × 10
9 CFU
ml
1 (data not shown), which is similar to the results
shown in Fig.
1. Cells prepared in the same manner and inoculated into
TSB mineralized
only about 63% of the [
14C]atrazine
during 120 h of incubation, and 37% of the
14C
remained in the medium. The J14a population grew from 1.7 ×
10
8 to 1.9 × 10
9 CFU ml
1.
When the medium was passed through a C
8 solid-phase
extraction
column, only 7% of the
14C was retained, while
30% passed through the column with the aqueous
phase. This indicates
that polar metabolites such as HA and hydroxy
N-dealkylated metabolites
were produced, as these are not retained
on C
8 columns.
This increase in hydroxylated metabolite production
in TSB media is
consistent with the data presented in Table
2.
Total recovery of
14C was 98% of that added initially.
Mineralization and biomass incorporation of
[ethyl-
14C]atrazine was dependent upon the
presence of an additional C source (sucrose)
in the medium (Fig.
3). Uninoculated control flasks had an
average
of 1.3% of the
14C in NaOH traps, probably
resulting from volatilization of atrazine.
The ratio of biomass to
14CO
2 incorporation was approximately 0.64 in
medium with sucrose
compared to 4.0 in C-limited medium without
sucrose. After the
experiment, samples of the media were passed through
a C
8 column
and then through an SCX cation-exchange column
to determine whether
the remaining radioactivity was atrazine or
metabolites. In C-amended
medium the residual
14C (5% of
added) was determined to be dissolved
14CO
2 by
release after acidification of the media. Nearly all of
the
14C remaining in the C- and N-limited medium (60%) was
determined
to be atrazine. The average recovery of
14C
as
14CO
2, [
14C]atrazine,
metabolites remaining in the medium, and J14a-assimilated
14C was 98%, including 10% removal of
14C
during sampling procedures. The J14a population in the C-amended
medium
grew from 7.3 × 10
6 to 2.8 × 10
8
CFU ml
1, while the population in the C- and N-limited
medium remained
unchanged throughout the experiment.

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|
FIG. 3.
Mineralization and biomass incorporation of
[ethyl-14C]atrazine by strain J14a in N-limited
medium with or without additional carbon sources, expressed as the
percentage of added 14C.
|
|
Atrazine-degrading enzymes appear to be constitutively produced by J14a
and remain intracellular. TSB-grown J14a cells inoculated
into BMA
medium with 100 µg of chloramphenicol ml
1 decreased
from 1.7 × 10
8 to 6.8 × 10
6 CFU
ml
1 but still degraded 50 µg of atrazine
ml
1. When TSB-grown cells were inoculated into BMA medium
without
chloramphenicol, complete degradation of the atrazine at 50 µg
ml
1 occurred, with growth from 1.7 × 10
8 to 6.8 × 10
8 CFU ml
1.
Culture supernatants did not degrade any atrazine, indicating
that
the atrazine-degrading enzymes are retained by the cells
during
degradation.
J14a degraded the herbicides ametryne (71% degraded), cyanazine
(80%), prometon (62%), and simazine (100%) in N-limited medium
(see Fig.
2). Metabolites of these compounds were not examined.
Propazine was also degraded, but sampling problems caused by the
low
solubility of propazine make this result more qualitative
than
quantitative.
Inoculation and degradation in soil.
The addition of J14a to
soils from the Alpha site resulted in two to five times more
atrazine mineralization (significant at P
0.05)
than that by the indigenous microbial community (Fig. 4). Sucrose addition had no effect on
mineralization. The soils treated with 200 µg of atrazine
g
1 and inoculated with J14a mineralized the atrazine
continuously throughout the 63-day period, which is in contrast to the
mineralization in inoculated soils treated with 50 µg of atrazine
g
1 of soil, where mineralization is substantially slower
after 35 days. Atrazine-mineralizing populations in the Alpha soil 63 days after atrazine addition were similar to those in the initial
populations, despite the addition of 105 cells g of
soil
1 at day 3 of the experiment (Table
3). Inoculation with J14a decreased both
extractable atrazine and nonextractable bound residues remaining in
the Alpha site soil treated with 50 µg g of
atrazine
1, but it did not affect the distribution of
14C in soils treated with the higher concentration of
atrazine (Table 3). Despite the differences in the fractional
amount (%) of [14C]atrazine mineralized in the 50- and 200-µg g
1 treatments amended with J14a, the actual
mass of atrazine mineralized was very similar in all four
treatments, ranging from 27 to 38 µg g
1.

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|
FIG. 4.
Mineralization of 50 (A) or 200 (B) µg of
[14C-U-ring]atrazine ml 1
added to soil from the Alpha site. Soils were amended with strain J14a
(105 cells g of soil 1), sucrose, or both J14a
and sucrose 3 days after atrazine treatment.
|
|
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|
TABLE 3.
Effect of A. radiobacter J14a and sucrose
on the population of atrazine-degrading bacteria and
distribution of 14C from
[14C-U-ring]atrazine after 63 days
in soil
|
|
The Bravo site soil contained an active indigenous
atrazine-mineralizing population of 1.4 × 10
3
degraders g of soil
1, (Table
3), which rapidly
mineralized [
14C-U-
ring]atrazine (Fig.
5). In the soils treated with 50 µg of
atrazine g
1, inoculation of J14a increased the
initial atrazine mineralization
rate over that in soils without
J14a; however, only the treatment
with both J14a and sucrose
mineralized a significantly larger
(
P < 0.05) amount
of atrazine at the end of the experiment. The
soils treated with
200 µg of atrazine g
1 did not show statistically
significant differences in the final
amounts mineralized, but the two
soils amended with J14a had a
more rapid initial degradation rate than
those without J14a. Greater
amounts of bound
14C-labeled
residues were formed in the soil from the Bravo site
than in the soil
from the Alpha site (Table
3). Recoveries of
14C from the
Alpha and Bravo soils ranged from 79 to 93%, with an
average recovery
of 85%.

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|
FIG. 5.
Mineralization of 50 (A) or 200 (B) µg of
[14C-U-ring]atrazine ml 1
added to soil from the Bravo site. Soils were amended with strain J14a
(105 cells g of soil 1), sucrose, or both J14a
and sucrose 3 days after atrazine treatment.
|
|
 |
DISCUSSION |
In N-limited media with sucrose, J14a was capable of relatively
rapid growth on atrazine, with a doubling time of 8.85 h at µmax. The
µmax/Ks ratio is a general
indicator of substrate use efficiency. For the Monod model this ratio
is 3.0 × 10
3, compared to the 9.8 × 10
4 estimated by the logistic model
(k4). For comparison, the analogous Vmax/Km ratios for
purified s-triazine hydrolase enzymes from Rhodococcus
corallinus NRRL B15444R and Pseudomonas strain
ADP are 1.25 × 10
2 and 2.93 × 10
2, respectively (11, 25). In contrast,
µmax/Ks ratios for
2,4-dichlorophenoxyacetic acid (2,4-D)-degrading bacteria ranged
from 8.89 × 10
3 to 0.1 due to generally
smaller Ks values (calculated from data in
reference 15). These comparisons indicate that J14a
is slightly less competitive for atrazine than the purified
bacterial enzymes and much less competitive than the
2,4-D-degrading bacteria are for 2,4-D. Furthermore, the value of
37.5 µg ml
1 for Ks indicates
that atrazine concentrations to support µmax are
unlikely to occur in soil systems due to solubility constraints.
Degradation of atrazine and simultaneous production of
14CO2 from
[14C-U-ring]atrazine proceeded without
significant accumulation of metabolites in the medium. The simultaneous
production of small quantities of HA and DEA indicates that J14a
produces enzymes that perform N-dealkylation and dechlorination
concomitantly. DEHA is produced by the sequential action of these
enzymes. The lack of DIA and DIHA accumulation indicates either that
J14a preferentially removes the ethyl over the isopropyl side chain,
which is consistent with other reports (5, 24) or that
removal of the isopropyl side chain is the rate-limiting step of the
J14a atrazine metabolic pathway and these metabolites are utilized
immediately after production. Strain J14a is similar to strains M91-3
(28) and Pseudomonas strain ADP (19)
in terms of dechlorination to produce HA followed by complete
mineralization of the triazine ring, but DEA production was not
reported for these other strains. The complete mineralization of the
triazine ring by this bacterium is more extensive than with M91-3,
Pseudomonas strain ADP, or the Pseudomonas strain YAYA6 (32), which mineralized between 40 and 80% of the
atrazine. The identification of J14a as an Agrobacterium
species is also different from most other triazine-degrading bacteria,
which have been identified as Klebsiella (10,
16), Pseudomonas (6, 19, 32), and
Rhodococcus (7, 10, 25, 31) species.
Strain J14a grew in media with atrazine as a sole N source, a
finding which is similar to previous reports describing
s-triazine ring cleavage to NH4+ and
CO2 (10, 28). J14a is also capable of degrading
and utilizing atrazine under conditions of simultaneous C and N
limitations. However, under the conditions of these experiments growth
did not occur, despite the incorporation of the
[ethyl-14C]atrazine into the cellular biomass. The
Rhodococcus TE1 strain dealkylates atrazine without
concurrent growth (7), but the M91-3 and
Pseudomonas YAYA6 strains grow on atrazine under
C-limited conditions (28, 32). Under C-limited conditions,
strain J14a incorporated approximately 20% of the ethyl side chain,
but very little was mineralized as 14CO2. The
ability to use C in the N-ethyl and N-isopropyl
groups of atrazine for population maintenance or growth would
confer an advantage to atrazine-degrading bacteria under conditions
where atrazine concentrations are high, such as contaminated
agrichemical dealership sites.
We determined the effect of several factors on the expression of
triazine-degrading activity in strain J14a. Long-term culture in the
absence of atrazine and degradation in the presence of chloramphenicol show that the degradation enzymes are produced constitutively. Mandelbaum et al. (21) reported that
NH4NO3 suppressed atrazine degradation by a
mixed culture, and Gan et al. (13) reported that
NH4 suppressed atrazine mineralization in soil. These
studies suggested that exogenous N might affect degradation in J14a.
However, strain J14a degrades atrazine in the presence of the
inorganic nitrogen sources NH4NO3,
KNO3, and (NH4)2SO4,
indicating that the J14a atrazine-metabolizing enzymes are not
regulated by inorganic N concentrations in the environment. Degradative
activity is not completely lost upon exposure to organic N sources,
such as the organic components of TSB. However, mineralization of
atrazine in TSB was incomplete (only about 63%), and greater concentrations of HA were produced in TSB-grown cells relative to
BMA-grown cells. We do not know the mechanisms for this effect, and
other studies have not addressed the effect of secondary substrates containing organic N; however, these types of compounds would be
present in soil and may have analogous effects on the biodegradation process.
J14a also demonstrated a wide substrate range among a variety of
s-triazine substrates in N-limited medium, unlike the
Pseudomonas sp. isolated by Yanze-Kontchou and Gschwind
(32), which could not degrade cyanazine or ametryne. J14a
was capable of degrading every s-triazine substrate tested,
although each of the triazines tested shares either an
N-ethyl, an N-isopropyl, or a Cl functional group
with atrazine (Fig. 2). The broad substrate range, constitutive enzyme production, insensitivity to inorganic N, and rapid dealkylation and dechlorination capabilities of J14a indicate that this organism would be ideal for addition to a spill site with a mixture of s-triazine herbicides.
We added strain J14a to soils collected from agricultural chemical
dealership sites treated with atrazine at concentrations which are
representative of those found at a wide range of sites. Our studies
were conducted under conditions that constitute a rigorous test of
bioaugmentation with J14a. We used soils from sites nearly devoid of
vegetation and thus likely to be low in easily decomposable C. Furthermore, the addition of atrazine and water 3 days prior to
J14a inoculation allowed the reestablishment of competing indigenous
microbial populations and the sorption of atrazine. Initial
sorption reactions are complete within 24 h, although sorption
increases slowly thereafter (26). Other researchers (3,
33) simultaneously applied atrazine and bacterial inoculum
into air-dried agricultural soils, which may have increased atrazine availability and reduced competing microbial populations.
Strain J14a augmentation was successful in increasing biodegradation of
the herbicide at both concentrations in soil from the Alpha site, but
it increased biodegradation only slightly in the Bravo soil.
The different responses to J14a inoculation in these two soils appear
to be related to the presence of indigenous atrazine degraders
and to the competitiveness of strain J14a. In soil from the Alpha site,
the indigenous atrazine degrader population was low and J14a was
able to increase atrazine mineralization. However, the J14a
populations declined from 105 cells g of
soil
1 at inoculation to below 102 cells
g
1 by 60 days after inoculation. The addition of sucrose
did not appear to consistently increase either biodegradation or
inoculum survival. Other bioaugmentation studies used inoculum levels
20 to 10,000 times larger than the 105 cells g of
soil
1 used here, and the fate of those inoculated cells
was not determined (3, 19, 33). The enhanced degradation
obtained from J14a in the Alpha soil suggests that effective
bioaugmentation can be achieved at lower inoculum levels, particularly
if survival of the inoculated strains can be promoted.
The Bravo soils had larger initial populations of
atrazine-degrading microorganisms, which were effective in
mineralizing atrazine, and J14a addition increased the total
mineralization above these levels in only one treatment. J14a addition
increased mineralization over noninoculated treatments during the 7- to 35-day period, which suggests an initial impact of inoculation. However, by the end of the experiment, the total atrazine-degrading populations (J14a and other atrazine degraders) were below the 105 J14a cells g of soil
1 added initially. We
cannot distinguish between J14a populations and other atrazine
degraders in the Bravo soils, but some decline in the J14a population
occurred.
Irrespective of our experimental treatments, the atrazine
residues remaining in soils indicate that bioremediation was
incomplete at 63 days. Estimated concentrations of atrazine in the
soil water are well below the Ks for J14a
measured in culture. It is uncertain how much of the
solvent-extractable atrazine remaining in the soil is available to
the J14a cells or other atrazine degraders. As residence time in
soil increases, the concentration of atrazine in the solution and
water-desorbable phases will decrease, while the proportion of
atrazine bound to soil organic matter or clays increases and
becomes much less bioavailable (1, 2). Preincubation of
atrazine in a soil with a high organic-matter content (36%) lowered the bioavailability of the atrazine and limited degradation by a Pseudomonas strain (33).
Greater amounts of bound residue were formed in the Bravo soil,
especially in the 200-µg g
1 treatments, than in the
soil from the Alpha site. One possible explanation of this finding is
that the microorganisms indigenous to Bravo soil may produce greater
extracellular concentrations of HA than the Alpha site
microorganisms or J14a. Sorption of HA (log
Kom = 2.0 to 2.8) to soil organic matter is
greater than that of atrazine (log
Kom = 1.6 to 2.0), which could result in an
accumulation of unavailable radiolabeled material in the bound residue
fraction (9).
Agrobacterium strain J14a was isolated from soil and is
capable of rapid atrazine metabolism. The constitutive expression of degradative enzymes and activity on a range of triazine herbicides suggest that strain J14a should be an effective bioaugmentation agent.
The addition of this bacterium into a soil with an indigenous population that was ineffective in degrading atrazine resulted in
significant increases in biodegradation. However, the biodegradation process was not complete, and the poor survival of J14a was a contributing factor. Long-term competition and survival of the inoculum
and bioavailability of the chemical are important factors affecting the
effectiveness of introduced microorganisms.
 |
ACKNOWLEDGMENTS |
We thank Jeremy Long for technical support in the
experimentation; Todd Anderson, Ellen Arthur, and Joel Coats for
arranging site sampling; Blythe Hoyle for help with the kinetics
analysis; and Robert Lerch for chemical analysis.
This work was supported by the U.S. Environmental Protection Agency.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: USDA-ARS,
National Soil Tilth Laboratory, 2150 Pammel Dr., Ames, IA 50011-4420. Phone: (515) 294-2308. Fax: (515) 294-8125. E-mail:
moorman{at}nstl.gov.
Present address: Betz-Dearborn, Inc., Woodlands, TX 77380.
Present address: Department of Environmental Studies, Florida
International University, University Park, Miami, FL 33199.
 |
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Applied and Environmental Microbiology, September 1998, p. 3368-3375, Vol. 64, No. 9
0099-2240/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
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