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Applied and Environmental Microbiology, February 1999, p. 599-605, Vol. 65, No. 2
Department of Veterinary Microbiology, Royal
Veterinary and Agricultural University, 1870 Frederiksberg C.,
Denmark1;
Department of Food Science,
Universiti Putra Malaysia, 43400 Serdong, Selangor D.E.,
Malaysia3; and
Laboratorium voor
Microbiologie, Rijksuniversiteit Gent, B 9000 Ghent,
Belgium2
Received 25 March 1998/Accepted 30 October 1998
Ninety-two strains of lactic acid bacteria (LAB) were isolated from
a Malaysian food ingredient, chili bo, stored for up to 25 days at
28°C with no benzoic acid (product A) or with 7,000 mg of benzoic
acid kg Lactic acid bacteria (LAB) are
utilized in the production and preservation of various fermented foods
in Southeast Asia. Examples of such foods include soybean tempeh
(20), tape ketan (5), fermented rice cake (puto)
(16), and various foods produced in Thailand
(35). In addition, LAB may occur as indigenous contaminants in a wide range of nonfermented foods in the region. One example is the
Malaysian food ingredient chili bo (19). Compared with Western foods, the identity and distribution of LAB in Southeast Asian
foods have not, with some exceptions (16, 21, 30, 33-35),
been extensively examined.
Identification of LAB mostly depends on traditional phenotypic
analyses, although molecular biology-based methods have become available (14, 26, 37). Hence, until now modern
identification techniques have not been used to a large degree for the
identification to the species level of LAB from Southeast Asian foods.
Two recent reports, however, included pulsed-field gel electrophoresis
(16) and randomly amplified polymorphic DNA analyses
(30) for characterization at the subspecies level of various
species of LAB in fermented rice cakes and Indonesian soy mash,
respectively. For identification at the species level, sodium dodecyl
sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) of whole-cell
proteins has the advantage of being fairly simple and rapid to perform.
However, for identification purposes, this technique requires an
extensive database covering all known target species. Because such a
database was developed for LAB (25, 27, 37), SDS-PAGE
can be used for the demonstration of new LAB taxa, although
DNA-DNA hybridization and/or rRNA sequence analysis is required for
species confirmation in quantitative genotypic terms (37).
Interest in microorganisms as a component of biological diversity has
been renewed in recent years (2). The interest in microorganisms occurring in foods is primarily due to the
biotechnological potential of new bacterial species and strains. In the
present study we selected chili bo as a potential source of new species or types of LAB because chili bo, as a low-pH product with an added
carbohydrate source, will support the predominance of LAB. Chili bo is
not a fermented product, but samples were stored for extended periods
beyond the time required for spoilage in order to select for LAB. Chili
bo is made on a cottage industry scale, offering ample opportunity for
the introduction of a wide variety of microbes, including LAB, from the
surrounding environment.
The aim of this study was to isolate and characterize LAB with
potential biotechnological uses from the traditional Malaysian food
chili bo.
Processing and storage conditions of chili bo.
Chili bo was
prepared by a commercial producer located in Petaling Jaya, Selangor,
D.E., Malaysia. The manufacturing process has been described elsewhere
(19), and the variable parameters were the addition of 7,000 mg of benzoic acid kg Isolation of strains.
A total of 92 single colonies of LAB
were selected randomly from pinpoint colonies in plate count agar (PCA)
(Oxoid) or from all colonies on de Man, Ragosa, and Sharpe-sorbic acid
(MRS-S) agar (3), restreaked on either PCA or MRS-S agar,
and examined for purity. Isolates were stored at 4°C in Cooked Meat
Medium broth (Oxoid) or in a Protect bead storage system (STC, Heywood, Lancashire, United Kingdom) at Phenotypical characterization of isolates.
LAB strains used
as reference strains for the characterization and identification of the
chili bo LAB isolates included Enterococcus faecalis ATCC
19433, Enterococcus faecium ATCC 19434, Lactobacillus acidophilus ATCC 4356, Lactobacillus zeae ATCC 393, Lactobacillus fermentum ATCC 9338, Lactobacillus
plantarum ATCC 14917, Lactococcus lactis ATCC 11454, and Leuconostoc mesenteroides subsp.
mesenteroides ATCC 23386.
0099-2240/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Identification of Lactic Acid Bacteria from Chili
Bo, a Malaysian Food Ingredient

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ABSTRACT
Top
Abstract
Introduction
Materials and methods
Results
Discussion
References
1 (product B). The strains were divided into eight
groups by traditional phenotypic tests. A total of 43 strains were
selected for comparison of their sodium dodecyl sulfate-polyacrylamide
gel electrophoresis (SDS-PAGE) whole-cell protein patterns with a
SDS-PAGE database of LAB. Isolates from product A were identified as
Lactobacillus plantarum, Lactobacillus
fermentum, Lactobacillus farciminis, Pediococcus acidilactici, Enterococcus
faecalis, and Weissella confusa. Five strains
belonging to clusters which could not be allocated to existing species
by SDS-PAGE were further identified by 16S rRNA sequence
comparison. One strain was distantly related to the
Lactobacillus casei/Pediococcus group. Two strains were related to Weissella at the genus or species level. Two
other strains did not belong to any previously described 16S rRNA group of LAB and occupied an intermediate position between the
L. casei/Pediococcus group and the Weissella
group and species of Carnobacterium. The latter two strains
belong to the cluster of LAB that predominated in product B. The
incidence of new species and subspecies of LAB in chili
bo indicate the high probability of isolation of new LAB from certain
Southeast Asian foods. None of the isolates exhibited bacteriocin
activity against L. plantarum ATCC 14917 and LMG 17682.
![]()
INTRODUCTION
Top
Abstract
Introduction
Materials and methods
Results
Discussion
References
![]()
MATERIALS AND METHODS
Top
Abstract
Introduction
Materials and methods
Results
Discussion
References
1 and a fine-grinding step, where
the temperature of the product rose to above 45 to 50°C for an
extended period of time (product B), or a process without added benzoic
acid or any fine grinding (product A). Two storage trials were done for
each type of product. The packaged samples were stored at ambient
temperatures (28 ± 2°C) for up to 25 days.
20°C. Isolation was done on days 0, 1, 3 (trial I; PCA only), and 25 for product A and days 0 and 25 for
product B.
1; and sensitivity to 30 µg of vancomycin g
1 in MRS agar. Sensitivity during
growth on soft MRS agar (0.75%) plates to nisin produced by L. lactis ATCC 11454 was examined by the spot-on-lawn method
(1). Production of antimicrobial compounds was tested by the
use of the deferred test (1) against selected indicators
among the ATCC reference strains and chili bo isolates.
SDS-PAGE of proteins and identification of isolates. Preparation of cell extracts and polyacrylamide gel electrophoresis were done as described previously (27). Identification of the isolates was performed by comparison of their protein patterns with a database of normalized protein fingerprints derived from reference strains for almost all known species of LAB (25, 28). Pattern storage and comparison were performed on an MS-DOS-compatible PC with the software package GelCompar (version 4.0 [39]).
Sequencing of 16S rRNA genes. Bacteria were cultured overnight in MRS broth, and 1 ml of culture was harvested by centrifugation. The cells were washed in 50:50 TE buffer (50 mM Tris, 50 mM EDTA, pH 8) by centrifugation and resuspended in 0.5 ml of 50:50 TE. Lysis was initiated by the addition of 50 µl of 10-mg/ml lysozyme. After incubation at 37°C for 30 min, 50 µl of 10-mg/ml proteinase K in 50:50 TE and 20 µl of 10% SDS (pH 7.2) were added and gently mixed, and the mixture was further incubated for 2 h at 56°C. Cell debris and protein were precipitated with 297 µl of 3 M potassium acetate. After centrifugation for 10 min at 16,000 × g the supernatant was added to 0.54 volume of isopropanol and gently mixed, and the mixture was spun down at 16,000 × g for 10 min. The pellet was washed twice in ice-cold ethanol by centrifugation, vacuum dried, and resuspended in ultrapure water (Millipore quality).
PCR amplification was performed as described by Vogel et al. (40). Oligonucleotides for both PCR amplification and sequencing were synthesized according to sequences and 16S rRNA positions given by Dewhirst et al. (10) and Paster and Dewhirst (23). The PCR-amplified fragments were purified on Microspin columns (Pharmacia Biotech) and cycle sequenced (Thermo Sequenase fluorescence-labelled primer cycle sequencing kit; Amersham, Little Chalfont, England) on an A.L.F. sequencer (Pharmacia Biotech) with fluorescein-labelled primers. Searches for 16S rRNA sequences were performed by FastA and BLAST in the Wisconsin Sequence Analysis Package (Genetics Computer Group, Madison, Wis.). Sequences were aligned manually to the Escherichia coli 16S rRNA sequence and to the consensus sequence given by Lane (17). Maximum-likelihood analysis was performed by the fastDNAml program (22), including bootstrap analysis (12) run on an HP9000/819 computer.Nucleotide sequence accession numbers. The nucleotide sequences described in this report have been deposited with GenBank under accession no. AF086706, AF086707, AF049743, AF049745, and AF949742 for the strains LMG 17702, LMG 17707, LMG 17676, LMG 17710, and LMG 17714, respectively.
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RESULTS |
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Phenotypical identification of isolates.
A total of 69 strains
of LAB were obtained from product A and 23 from product B, resulting in
a total of 92 strains. Table 1 presents
the distribution of isolates by type of product, trial, and storage
time. All 92 isolates were shown to be LAB by their positive Gram
reactions, absence of catalase and oxidase activity, fermentative
catabolism of glucose, and lack of reduction of nitrate. They all grew
under aerobic conditions, none produced spores in MRS broth, and they
were all nonmotile, with the exception of one presumptive
Streptococcus isolate. The isolates could be differentiated into eight major groups by a few key traditional phenotypic tests listed in Table 1. A total of 43 isolates were selected from these
groups (except group 8) for identification by use of API 50 CH and
SDS-PAGE of whole-cell proteins.
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Bacteriocin production. All of the strains presented in Table 2, except for one strain of the group 1 LAB and one strain of L. plantarum, were examined by the deferred tests for antimicrobial activity towards L. plantarum ATCC 14917. None exhibited antimicrobial activity towards this strain. Thirty-nine of these strains were also tested against the chili bo isolate L. plantarum LMG 17682 with the same negative result.
Furthermore, 19 strains of the group 1 LAB exhibited no antagonistic activity against five additional strains: L. casei ATCC 393, L. fermentum ATCC 9338, L. lactis ATCC 11454, E. faecium ATCC 19434, and L. mesenteroides subsp. mesenteroides ATCC 23386.16S rRNA gene sequence analysis. Two isolates from the unidentified group 1 (LMG 17710 and LMG 17714), one unidentified isolate from group 2 (LMG 17676), and two unidentified isolates from group 5 (LMG 17702 and LMG 17707) were selected for analysis. Sequences were obtained for the region 24 to 1492 (E. coli positions) of the 16S rRNA gene. The sequences were 1,477, 1,479, and 1,488 bases in LMG 17710, LMG 17714, and LMG 17676, respectively, and 1,497 bases in LMG 17702 and LMG 17707. The highest similarity was found between the group 5 isolates LMG 17702 and LMG 17707 (99.9%). A high similarity was also found between the group 1 isolates LMG 17710 and LMG 17714 (99.3%). LMG 17710 was related to LMG 17676 with 91.1% similarity and to LMG 17702 and LMG 17707 with 89 or 88.9% similarity. LMG 17714 was related to LMG 17676 with 91.4% similarity and to LMG 17702 and LMG 17707 with 90 or 89.9% similarity. LMG 17676 was related to LMG 17702 and LMG 17707 with 87 or 86.9% similarity.
The sequence of each of the five strains was used to search the GenBank and EMBL databases. The phylogenetic analysis was performed with the 16S rRNA gene sequences of the 50 taxa most closely related to the five presumed LAB. The region 29 to 1481 (E. coli positions) was aligned, leaving 1,457 positions for phylogenetic analysis. The phylogenetic tree based on maximum likelihood is shown in Fig. 2.
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DISCUSSION |
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The results reported here constitute part of a study focusing on identification of LAB derived from a source of food products hitherto not well examined: Malaysian fermented and nonfermented foods produced on a cottage industry scale. The high potential for isolating new types or species of LAB was demonstrated in this study by SDS-PAGE screening of 43 isolates from two variants of the product chili bo. It was observed from SDS-PAGE that 16 strains (37%) belonged to four taxa not covered by the very extensive database for known species of LAB (25, 27). The significance of this finding can be illustrated by the fact that screening of 157 strains of LAB from a variety of traditional Greek dairy products (36), 30 strains from Portuguese wines and must (24), and 200 strains from traditional fermented products (38) and from sourdough (41) always resulted in only a few strains (<2%) which could not be identified by the database used for the study. Additional 16S sequences obtained from strains within three of the four taxa that were not identifiable by SDS-PAGE revealed that they represented new genera or species based on the lack of match with sequences stored in the GenBank and EMBL databases. Of these, LMG 17676 was distantly related to species of the L. casei/Pediococcus group, representing both obligately homofermentative species and facultative heterofermentative and obligately heterofermentative species (7, 37). The two strains LMG 17702 and LMG 17707 were related to various species within the genus Weissella. The two strains LMG 17710 and 17714 of group 1 represent a new group of LAB distantly related to the groups L. casei/Pediococcus, Weissella, and Carnobacterium.
Two types of chili bo were examined in this study: with and without
7,000 mg of benzoic acid kg
1. Although this additive is
only allowed in amounts up to 1,000 mg of benzoic acid
kg
1 according to Malaysian food legislation
(4), local manufacturers frequently violate this regulation
by adding benzoic acid up to 7,000 mg kg
1
(41a). Product B, with 7,000 mg of benzoic acid
kg
1, would therefore allow a growth of LAB representative
for a commercial product, whereas product A, without added benzoic
acid, would allow for growth of a wider range of LAB initially present
in the product. Both products spoiled after 1 to 2 days of storage at
28°C (19). Thus, samples from day 3 and day 25 represent spoiled products which were included in the study to facilitate selection of LAB.
The two types of chili bo products differed dramatically in the
composition of the LAB flora. Product A contained high levels of LAB,
ranging from log 6 CFU g
1 initially to log 8 CFU
g
1 after 2 to 25 days of storage (19) and
contained LAB of several species. Within each species considerable
heterogeneity was observed when analyzed by SDS-PAGE, indicating that
the majority, if not all, of the isolates within each species
represented different clonal lines. The species encountered in product
A differed in two trials (Table 1) although the products were from the
same manufacturer. This might be due to variations in raw material or
in the production process.
Product B initially contained low levels of LAB at log 2 CFU
g
1, which slowly increased to log 7 to log 8 CFU
g
1 by day 25 (19). All of the strains isolated
at day 25 belonged to a single species (group 1), whereas one strain of
E. faecalis was isolated at day 0. Although one species of
LAB predominated in product B after 25 days, the SDS-PAGE data revealed
more than one clonal line to be present. The lack of species diversity
of LAB in product B can be explained by the addition of 7,000 mg of
benzoic acid kg
1 and the fine-grinding procedure, which
exposes the microbial flora to temperatures above 45 to 50°C for an
extended period. The reason for the predominance of the group 1 LAB in
product B is not known, but it might be related to resistance to
benzoic acid as well as to the mild heat treatment procedure used for product B. The fact that this predominant group 1 LAB was not encountered in product A was probably due to the slow growth of this
species compared with the other LAB isolated (reference
19 and data not shown).
The predominant species and types of LAB in both products were able to grow on acetate agar (data not shown), indicating that they are aciduric microorganisms. Nonaciduric LAB might not grow well on the selective MRS-S agar (15), which was used as one of the isolation media in this study. The low pH values (<4.5) in chili bo probably selected for aciduric LAB.
The results obtained by Leisner et al. (19) show that chili bo provides a substrate for the growth of several species of LAB in the absence of inhibitory parameters (product A). It is interesting that only L. farciminis out of a total of 43 isolates examined was able to catabolize starch, the single carbohydrate source added to chili bo (data not shown). Fermentable carbohydrates probably are present in chili bo as a result of amylases generated by other microorganisms, e.g., Bacillus subtilis, or as a result of the breakdown of polysaccharides other than starch, e.g., the cellulose, hemicelluloses, and pectic substances present in the chili.
The potential biotechnological applications of the chili bo LAB were not examined to a wide extent. None of the isolates produced antagonistic activity towards L. plantarum ATCC 14917 and LMG 17682. The possibility exists that such an activity could be observed against other species of LAB although no such result was obtained by screening group 1 LAB for activity against five additional LAB species.
The rapid spoilage of the chili bo products was not caused by the LAB
(19). The incidence of heterofermentative LAB might be a
problem on some occasions due to production of gas and/or slime. Their
spoilage potential might easily be controlled by various methods,
including low pH, the presence of 1,000 mg of benzoic acid
kg
1, storage at refrigeration temperature, or the
addition of nisin (19).
This study demonstrates the high potential for isolating new species and types of LAB from Malaysian foods. We are currently expanding this research to other Malaysian foods made on a cottage industry scale, such as tapai, durian paste, tempeh, and various fermented seafoods. Further investigations into the taxonomic classification of the new taxa demonstrated in this study are in progress.
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ACKNOWLEDGMENTS |
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This study was partly funded by the Malaysian Government through the IRPA mechanism (Project no. 51094). B.P. is indebted to the Federal Office for Scientific, Technical and Cultural Affairs for research and personnel grants as a node of the Belgian Coordinated Collections of Microorganisms (BCCM/LMG).
Gitte Frederiksen and Stina Holm are thanked for technical assistance with the 16S rRNA analysis.
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FOOTNOTES |
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* Corresponding author. Mailing address: Department of Veterinary Microbiology, Royal Veterinary and Agricultural University, Bülowsvej 13, 1870 Frederiksberg C., Denmark. Phone: 45 3528-2760. Fax: 45 3528-2757. E-mail: jjl{at}kvl.dk.
Present address: Science Department, Yakult Belgium
sa/nv, B-1070 Brussels, Belgium.
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98:399-421 |
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