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Applied and Environmental Microbiology, March 1999, p. 995-998, Vol. 65, No. 3
0099-2240/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
A Cold-Active Glucanase from the Ruminal Bacterium
Fibrobacter succinogenes S85
Abiye H.
Iyo and
Cecil W.
Forsberg*
Department of Microbiology, University of
Guelph, Guelph, Ontario, Canada
Received 4 September 1998/Accepted 16 December 1998
 |
ABSTRACT |
We previously characterized two endoglucanases, CelG and EGD, from
the mesophilic ruminal anaerobe Fibrobacter succinogenes S85. Further comparative experiments have shown that CelG is a cold-active enzyme whose catalytic properties are superior to those of
several other intensively studied cold-active enzymes. It has a lower
temperature optimum, of 25°C, and retains about 70% of its maximum
activity at 0°C, while EGD has a temperature optimum of 35°C and
retains only about 18% of its maximal activity at 0°C. When assayed
at 4°C, CelG exhibits a 33-fold-higher kcat value and a
73-fold-higher physiological efficiency
(kcat/Km) than EGD. CelG has a low
thermal stability, as indicated by the effect of temperature on its
activity and secondary structure. The presence of small amino acids
around the putative catalytic residues may add to the flexibility of
the enzyme, thereby increasing its activity at cold temperatures. Its
activity is modulated by sodium chloride, with an increase of over
1.8-fold at an ionic strength of 0.03. Possible explanations for the
presence of a cold-active enzyme in a mesophile are that cold-active
enzymes are more broadly distributed than previously expected, that
lateral transfer of the gene from a psychrophile occurred, or that
F. succinogenes originated from the marine environment.
 |
INTRODUCTION |
Fibrobacter succinogenes
S85, a gram-negative anaerobe, is one of the major cellulolytic
organisms in the rumen (10). Although it produces multiple
cellulases, so far none has been characterized as being cold active.
Cold-active cellulases are uncommon even among psychrophiles, but there
is a report on a thermolabile amylase from the Antarctic bacterium
Alteromonas haloplanctis A23 (8). This may not be
surprising since the organism itself is a psychrotroph. With the
increasing sophistication of molecular cloning methods, previously
unculturable organisms are now identifiable (1), increasing
the possibility of discovering new strains or even identifying
previously characterized strains in much different environments. For
instance, there are indications that Fibrobacter species are
present in oceans (12) and tundra soil (29),
where temperatures are very low. These discoveries may have important impacts on our knowledge of microorganisms.
While enzymes from thermophiles are stabilized by a combination of
noncovalent interactions making use of a small number of amino acid
replacements (19), less is known about residues important for adaptation of their psychrophilic counterparts. It is thought that
the thermal instability in this group is a result of their highly
flexible and loose structure (7, 17). As a rule, cold-active enzymes exhibit less temperature dependence at low temperature and
possess higher kcat values, higher physiological
efficiencies (kcat/Km values), and
lower activation energies than their thermophilic counterparts but also
exhibit an increased heat lability (7, 26).
In this report, we present data on the CelG enzyme from F. succinogenes S85 with respect to the effect of temperature on its enzymatic activity, thermal stability, and structure.
 |
MATERIALS AND METHODS |
Bacterial strains, plasmids, and enzyme assays.
Escherichia
coli DH5
(14) was used for routine propagation of
plasmids, while E. coli BL21(DE3) (13, 25) was
used for protein expression. The plasmids containing the two genes
encoding the CelG and EGD enzymes have been previously described
(18, 23). Growth of plasmid-containing strains as well as
expression and purification of enzymes were done by previously
described methods (18).
The standard assay for endoglucanase activity was carried out as
described previously (18), using low-viscosity carboxymethyl cellulose (CMC) at a final concentration of 1% (wt/vol). Assays for
CelG and EGD were carried out at 25 and 35°C, respectively. To
determine the effect of temperature on enzyme activity, purified enzymes were incubated with substrate in a buffer of the optimum pH
(18, 23) at different temperatures. The thermal stabilities of CelG and EGD were determined by incubating the enzymes at various temperatures for 2 h and assaying residual activity at timed
intervals. Kinetic parameters were determined directly from
Lineweaver-Burk plots (22), using low-viscosity CMC at
concentrations from 5 to 20 mg ml
1. Determinations were
done at 4 and 25°C for both enzymes. The amount of reducing sugar
produced at the end of the incubation period in all cases was
determined by the method of Lever (21). Briefly, enzyme
assay reactions (200-µl volumes) were stopped by addition of 1.5 ml
of p-hydroxybenzoic acid hydrazide containing 1 mM bismuth
nitrate and 500 mM sodium hydroxide, which inactivates the enzyme
completely. After the reactions were stopped, the tubes were incubated
at 70°C (10 min) for color development and the amount of reducing
sugar was estimated by measuring the absorbance of the solution at 410 nm. The protein concentration was estimated by the dye binding method
of Bradford (2), using a Bio-Rad (Richmond, Calif.) protein
assay kit, with bovine serum albumin fraction V (Sigma Biochemicals) as
the standard.
Ea determination.
Activation energy (Ea) was determined from
the slope (
Ea/R) of Arrhenius plots of log V
(in units per milligram per minute) versus 1/T, while
thermodynamic activation parameters were calculated by using the
following equations:
G* =
H*
T
S*,
H* = Ea
RT, and
S* = 2.303R(log kcat
10.753
log T + Ea/2.303 RT), where
G represents change in free energy,
H
is change in euthalpy,
S is change in entropy,
R is the universal gas constant, and T is the
absolute temperature (in Kelvin).
Far-UV CD spectroscopy.
Circular dichroic (CD) spectra of
proteins (0.2 mg/ml) in 10 mM phosphate buffer, pH 7.5, were recorded
with a Jasco model J600 spectropolarimeter (Japan Spectroscopic Co.
Ltd., Tokyo, Japan) in a 0.1-cm-light-path cell under a constant
nitrogen purge. Samples were scanned an average of five times between
the wavelengths of 190 and 250 nm. Secondary-structure fractions were
calculated by using the Jasco secondary-structure program based on the
algorithm of Chang et al. (4) and the database of Hennessey
and Johnson (15). Temperature was controlled
thermostatically by the use of water-jacketed curvettes.
Nucleotide sequence accession numbers.
The nucleotide
sequences for the celD and celG genes were
previously assigned GenBank accession no. U05897 and U33887, respectively.
 |
RESULTS AND Discussion |
The CelG enzyme had a pH optimum of 5.5 and a temperature optimum
of 25°C. The thermodependence curves of CelG and EGD endoglucanase activities are shown in Fig. 1. While it
is true that CelG shares a lot of properties with other
Fibrobacter endoglucanases and exhibits structural
similarities to the members of the family 5 cellulases to which it
belongs (16), its thermodependence makes it unique. Both
CelG and EGD show a rapid decrease in activity at 45°C, indicating
the induction of thermal alteration of the catalytic mechanisms of the
two enzymes. However, at 0°C there is a clear difference between the
two enzymes. While CelG maintains about 70% of its maximum activity at
this temperature, EGD retains only 18% of its maximum activity. In
terms of thermal stability, EGD is more stable than CelG, maintaining
about 55% of its maximum activity after 2 h of exposure at
42.5°C. At the same temperature and exposure time, CelG maintains
about 30% of its maximum activity. An interesting difference is seen
when both enzymes are exposed at 40°C and assayed under optimal
conditions: EGD maintains about 90% of its maximum activity, while
CelG maintains 70%. This difference between the behaviors of the
enzymes at 40 and 42.5°C alludes to the ability of proteins to
renature under favorable conditions and also shows that for the two
enzymes, induction of irreversible denaturation occurs from about
42.5°C and that once this temperature is reached, complete
denaturation sets in very quickly (Fig.
2). Enzyme renaturation is a feature that
is consistent with several endoglucanases. The optimum temperature for
EGD activity is 35°C, which is much higher than that for CelG. The
low temperature optimum reported for CelG has never been reported for
any other F. succinogenes enzymes, and the high catalytic
activity at 0°C documents that it satisfies the criteria for being a
cold-active enzyme (7, 28).

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FIG. 1.
Effects of temperature on the activities of the CelG
( ) and EGD ( ) endoglucanases. Assays were performed in 50 mM
sodium acetate buffer, pH 5.5, for CelG and in 50 mM sodium phosphate,
pH 6.0, for EGD. The maximum specific activity of EGD, which is 12 U
(mg of protein) 1, was set as 100%; the specific activity
of CelG at various temperatures was related to the 100% value for EGD
at 35°C.
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FIG. 2.
Effect of temperature on the stability of CelG (A) and
EGD (B). Assays were carried out under optimal conditions for each
enzyme after exposure to different temperatures for 2 h. The
numbers next to the individual plots represent temperature in degrees
Celsius.
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|
The values for the kinetic parameters kcat and
kcat/Km exhibited by CelG are much
higher than those for EGD (Table 1). The kcat of CelG toward CMC at 4°C is 34 times higher than
that for EGD, while the kcat/Km
ratio, which determines the physiological efficiency of an enzyme, is
75-fold higher for CelG than for EGD. High kcat and
physiological efficiency, including a decreased Km at lower temperatures, are features
consistent with cold-active enzymes (5). The large degrees
of variation in these important kinetic properties of psychrophilic
enzymes are thought to compensate for the ordinarily low reaction rates
that normally occur at low temperatures (6). The fact that
the same scenario is true for CelG is evident upon comparison of its
kinetic and thermodynamic activation parameters with those of EGD,
which is considered by all standards to be a mesophilic enzyme from the
same organism.
Naturally, enzyme activity increases with temperature in a predictable
manner until a maximum activity is reached, at which point most enzymes
become inactivated as temperature is further increased. Of course,
there are enzymes which do not follow this trend, resulting in a much
slower and nonexponential rise in velocity; examples include
phosphoglycerate kinases from both mesophilic and thermophilic
microorganisms (27). A nonexponential rise in velocity could
indicate that thermal denaturation sets in very early in the reaction
process, before a true exponential increase is seen. This may be the
case for CelG, indicating a deviation from the Arrhenius equation. This
has been corrected in the derivation of the activation energy for CelG
for the basis of comparison, since it was obvious that the value for
CelG would be lower than that of EGD. The value obtained for CelG was
6.5 kJ mol
1, while that calculated for EGD within the
same temperature range (0 to 25°C) was 35 kJ mol
1
(Table 2). EGD, on the other hand,
conforms to the expected trend. The activation energy for CelG is
constant over the above-described temperature range (results not
shown), indicating that the enzyme does not undergo major structural
changes within this range, a fact which is supported by the CD spectra
(Fig. 3) at both 4 and 20°C. At both
temperatures the percentages of randomness and
-turns are maintained
at 18 and 20%, respectively, while at 55°C randomness alone is
almost 50%, showing the protein structure disorganization associated
with reduced catalytic activity. The contribution of the thermodynamic
activation parameters enthalpy and entropy is seen in the value of
G* for CelG (Table 2), which is much lower than that for
EGD. This low value indicates that CelG will require less heat content
and, hence, minimal entropy to achieve activation.

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FIG. 3.
CD spectra of CelG recorded in 10 mM phosphate buffer
(pH 7.5) at 4, 20, and 55°C. The protein concentration in the
solution was 0.2 mg ml 1.
|
|
While a low temperature optimum or high activity at low temperatures is
a prerequisite for being categorized as cold active, there are
presently no formal rules for identifying cold-active enzymes because
of the paucity of these enzymes in the databases. In spite of these
anomalies, certain trends are beginning to emerge. One of them is the
stacking of small amino acids around catalytic residues (6,
8). Although this stacking is not very evident in CelG, it is
interesting that the putative catalytic glutamic acid residue at
position 166 is flanked by three small amino acids on the left and a
glycine on the right. As yet, the number of these small amino acids
required around catalytic residues has not been determined. It is
thought that the presence of small amino acids reduces steric hindrance
at the entrance of the active site, inducing active-site flexibility
and providing an energetically favorable environment. This feature is
essential for high activity at low temperatures and is consistent with
heat lability (6).
Another feature of cold-active enzymes, according to Hochachka and
Somero (17), is the possession of folding flexibility. For
activity at a low temperature, an enzyme must have a more flexible
structure to enable rapid and reversible catalytic cycles (6). The predicted CelG structure shows extensive loop
formation (56%) (24), while CD analysis indicates that
there is about 40%. This value, coupled with the presence of small
amino acids at the entrance of the catalytic residue, may add to the
active-site flexibility of CelG.
The celG gene, encoding the cold-active glucanase, probably
originated in one of the following three ways. First, the cold-active nature of enzymes may be a more common phenomenon in mesophilic organisms than has been theorized. Reaction rates in this case may be
temperature independent, as in perfectly evolved enzymes (7), whose reactions occur almost as soon as the enzyme and substrate come in contact. Second, the gene may have originated by
lateral transfer from a cellulolytic psychrophilic organism; however,
it seems that the opportunity for such a transfer would be rare. Third,
ruminal F. succinogenes may have a marine origin, with the
celG gene representing a vestigial gene not yet fully evolved, or, since it has low activity in a purely mesophilic environment, it may have been lost from most species of
Fibrobacter, since we have previously shown that it is
present only in the type species F. succinogenes S85
(18).
Support for the last hypothesis comes from the recent detection of
Fibrobacter species in ocean water (12), where
temperatures can be low. Gordon and Giovannoni (12)
discovered the presence of a Fibrobacter species-related
gene lineage in 16S rRNA clone libraries prepared from water samples
collected by filtration from a depth of 80 m at a site in the
western Sargasso Sea and from a depth of 120 m at a site in the
Pacific Ocean. This hypothesis is further strengthened by the fact that
increasing salt concentrations were found to be stimulatory to the
activity of CelG, with a maximum stimulation of 1.8-fold at an ionic
strength of 0.03. This is not surprising, since Bryant et al.
(3) have previously shown that F. succinogenes
S85 requires high salt concentrations for optimal growth, a
characteristic exhibited by many marine bacteria (20). Also,
procedures previously developed for the isolation of cell envelope
fractions from the halophilic marine bacterium Alteromonas
haloplancktis (9) have been successfully applied to
F. succinogenes S85 (11).
Resolution of these hypotheses will be provided with the isolation of
F. succinogenes species from marine and other cold environments.
 |
ACKNOWLEDGMENT |
This research was supported by a Natural Sciences and Engineering
Research Council operating grant to C.W.F.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Microbiology, University of Guelph, Guelph, Ontario N1G 2W1, Canada. Phone: (519) 824-4120, ext. 3433. Fax: (519) 837-1802. E-mail: cforsber{at}micro.uoguelph.ca.
 |
REFERENCES |
| 1.
|
Amann, R. I.,
W. Ludwig, and K.-H. Schleifer.
1995.
Phylogenetic identification and in situ detection of individual microbial cells without cultivation.
Microbiol. Rev.
59:143-169[Abstract/Free Full Text].
|
| 2.
|
Bradford, M. M.
1976.
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding.
Anal. Biochem.
72:248-254[Medline].
|
| 3.
|
Bryant, M. P.,
I. M. Robinson, and H. Chu.
1959.
Observations on the nutrition of Bacteroides succinogenes a ruminal cellulolytic bacterium.
J. Dairy Sci.
42:1831-1847[Abstract/Free Full Text].
|
| 4.
|
Chang, C. T.,
C.-S. C. Wu, and J. T. Yang.
1978.
Circular dichroic analysis of protein conformation: inclusion of the -turns.
Anal. Biochem.
91:13-31[Medline].
|
| 5.
|
Choo, D.-W.,
T. Kurihara,
T. Suzuki,
K. Soda, and N. Esaki.
1998.
A cold-adapted lipase of an Alaskan psychrotroph, Pseudomonas sp. strain B11-1: gene cloning and enzyme purification and characterization.
Appl. Environ. Microbiol.
64:486-491[Abstract/Free Full Text].
|
| 6.
|
Davail, S.,
G. Feller,
E. Narinx, and C. Gerday.
1994.
Purification, characterization, and sequence of the heat-labile subtilisin from the Antarctic psychrophile Bacillus TA41.
J. Biol. Chem.
269:17448-17453[Abstract/Free Full Text].
|
| 7.
|
Feller, G., and C. Gerday.
1997.
Psychrophilic enzymes: molecular basis of cold adaptation.
Cell. Mol. Life Sci.
53:830-841[Medline].
|
| 8.
|
Feller, G.,
T. Lonhienne,
C. Deroanne,
C. Libioulle,
J. V. Beumen, and C. Gerday.
1992.
Purification, characterization, and nucleotide sequence of the thermolabile -amylase from the Antarctic psychrotroph Alteromonas haloplanctis A23.
J. Biol. Chem.
267:5217-5221[Abstract/Free Full Text].
|
| 9.
|
Forsberg, C. W.,
J. W. Costerton, and R. A. MacLeod.
1970.
Separation and localization of cell wall layers of a gram-negative bacterium.
J. Bacteriol.
104:1338-1353[Abstract/Free Full Text].
|
| 10.
|
Forsberg, C. W.,
K.-J. Cheng, and B. A. White.
1997.
Polysaccharide degradation in the rumen and large intestine, p. 319-379.
In
R. I. Mackie, and B. A. White (ed.), Gastrointestinal microbiology. Chapman and Hall, New York, N.Y.
|
| 11.
|
Gong, J., and C. W. Forsberg.
1993.
Separation of outer and cytoplasmic membranes of Fibrobacter succinogenes and membrane and glycogen granule locations of glycanases and cellobiase.
J. Bacteriol.
175:6810-6821[Abstract/Free Full Text].
|
| 12.
|
Gordon, D. A., and S. J. Giovannoni.
1996.
Detection of stratified microbial populations related to Chlorobium and Fibrobacter species in the Atlantic and Pacific oceans.
Appl. Environ. Microbiol.
62:1171-1177[Abstract].
|
| 13.
|
Grodberg, J., and J. J. Dunn.
1988.
OmpT encodes the Escherichia coli outer membrane protease that cleaves T7 RNA polymerase during purification.
J. Bacteriol.
170:1245-1253[Abstract/Free Full Text].
|
| 14.
|
Hanahan, D.
1983.
Studies on the transformation of Escherichia coli with plasmids.
J. Mol. Biol.
166:557-560[Medline].
|
| 15.
|
Hennessey, J. P., Jr., and W. C. Johnson, Jr.
1981.
Information content in the circular dichroism of proteins.
Biochemistry
20:1085-1094[Medline].
|
| 16.
|
Henrissat, B., and A. Bairoch.
1993.
New families in the classification of glycosyl hydrolases based on amino acid sequence similarities.
Biochem. J.
293:781-788.
|
| 17.
|
Hochachka, P. A., and G. N. Somero.
1984.
Biochemical adaptations.
Princeton University Press, Princeton, N.J.
|
| 18.
|
Iyo, A. H., and C. W. Forsberg.
1996.
Endoglucanase G from Fibrobacter succinogenes S85 belongs to a class of enzymes characterized by a basic C-terminal domain.
Can. J. Microbiol.
42:934-943[Medline].
|
| 19.
|
Jaenicke, R.
1991.
Protein stability and molecular adaptations to extreme conditions.
Eur. J. Biochem.
202:715-728[Medline].
|
| 20.
|
Laddaga, R. A., and R. A. MacLeod.
1982.
Effects of wash treatments on the ultrastructure and lysozyme penetrability of the outer membrane of various marine and two terrestrial Gram-negative bacteria.
Can. J. Microbiol.
28:318-324.
|
| 21.
|
Lever, M.
1972.
A new reaction for the colorimetric determination of carbohydrates.
Anal. Biochem.
47:273-279[Medline].
|
| 22.
|
Lineweaver, H., and D. Burk.
1934.
The determination of enzyme dissociation constants.
J. Am. Chem. Soc.
56:658-666.
|
| 23.
|
Malburg, L. M., Jr.,
A. H. Iyo, and C. W. Forsberg.
1996.
A novel family 9 endoglucanase gene (celD), whose product cleaves substrates mainly to glucose, and its adjacent upstream homolog (celE) from Fibrobacter succinogenes S85.
Appl. Environ. Microbiol.
62:898-906[Abstract].
|
| 24.
|
Rost, B., and C. Sander.
1993.
Improved prediction of protein secondary structure by use of sequence profiles and neural networks.
Proc. Natl. Acad. Sci. USA
90:7558-7562[Abstract/Free Full Text].
|
| 25.
|
Studier, F. W., and B. A. Moffat.
1986.
Use of bacterial T7 RNA polymerase to direct selective high level expression of cloned genes.
J. Mol. Biol.
189:113-130[Medline].
|
| 26.
|
Taguchi, S.,
A. Ozaki, and H. Momose.
1998.
Engineering of a cold-adapted protease by sequential random mutagenesis and a screening system.
Appl. Environ. Microbiol.
64:492-495[Abstract/Free Full Text].
|
| 27.
|
Thomas, T. M., and R. K. Skopes.
1998.
The effects of temperature on the kinetics and stability of mesophilic and thermophilic 3-phosphoglycerate kinases.
Biochem. J.
330:1087-1095.
|
| 28.
|
Trimbur, D. E.,
K. R. Gutshall,
P. Prema, and J. E. Brenchley.
1994.
Characterization of a psychrotrophic Arthrobacter gene and its cold-active -galactosidase.
Appl. Environ. Microbiol.
60:4544-4552[Abstract/Free Full Text].
|
| 29.
|
Zhou, J.,
M. E. Davey,
J. B. Figueras,
E. Rivkina,
D. Gilichinsky, and J. M. Tiedje.
1997.
Phylogenetic diversity of a bacterial community determined from Siberian tundra soil DNA.
Microbiology
143:3913-3919[Abstract].
|
Applied and Environmental Microbiology, March 1999, p. 995-998, Vol. 65, No. 3
0099-2240/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
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