Applied and Environmental Microbiology, May 1999, p. 1815-1825, Vol. 65, No. 5
Osmoadaptation in Archaea
Merkert Chemistry Center, Boston College,
Chestnut Hill, Massachusetts 02167
The ability to adapt to fluctuations
in external osmotic pressure (osmoadaptation) and the development of
specific mechanisms to achieve this (osmoregulation) are fundamental to
the survival of cells (6, 16, 67, 73, 76). Most cells
maintain an osmotic pressure in the cytoplasm that is higher than that
of the surrounding environment, resulting in an outward-directed pressure, turgor, whose maintenance is essential for cell division and
growth. Changes in environmental osmolarity can trigger the flux of
water across the cytoplasmic membrane. Thus, to avoid lysis under
low-osmolarity or dehydration under high-osmolarity growth conditions,
cells must possess active mechanisms that permit timely and efficient
adaptation to changes in environmental osmolarity.
Eubacterial organisms have evolved several strategies that enable them
to survive and proliferate in environments of varied ionic composition
and salinity ranging from freshwater to hypersaline habitats: (i) the
intracellular accumulation of inorganic ions such as potassium; (ii)
the evolution of salt-tolerant (and in some cases salt-dependent)
enzymes; and (iii) the accumulation, either by transport or synthesis,
of selected organic molecules which may be negatively charged (and act
as counterions for intracellular K+) or neutral.
Accumulation of "compatible" solutes is a particularly ubiquitous
response. The current understanding is that these compatible solutes
maintain an equilibrium between macromolecule surface areas and the
water phase by resisting drastic changes in intracellular water
density. This is based on the ability of compatible solutes to
accumulate at these interface regions (75). For example, the
preferential hydration of ribonuclease is 600 mol of water per mol of
protein. However, in the presence of sarcosine, a common osmolyte in
eukaryotic organisms, the preferential hydration is reduced to 70 mol
of water per mol of protein (51). These same solutes also
protect macromolecules from thermal denaturation (e.g., glycine-based
osmolytes provide an extraordinary degree of protection for hen egg
white lysozyme [64]). Protein unfolding results in an
increase of total protein surface area. Osmolytes oppose the increase
in surface area by a preferential hydration of proteins (1)
and favorable interactions with side chains (53). These
interactions stabilize proteins by raising the chemical potential of
the denatured protein, which leads to contraction of the random coil to
a folded structure (53). A recent study quantifying the
stability afforded by compatible solutes showed that the osmolyte
trimethylamine oxide can increase the population of folded structures
compared to denatured protein by nearly 5 orders of magnitude
(3).
Archaea, which are often found in high-salt as well as high-temperature
environments, use the same general strategies for osmoadaptation as
eubacterial and eukaryotic organisms. However, they are notable for the
unusual organic osmolytes accumulated. Specific examples of these
osmolytes and factors that affect their accumulation are provided in
the following sections.
Accumulation of inorganic ions. The ubiquity of
K+ uptake systems in cell membranes, their high rates for
ion transport, and the ability to gate this ion flow might, at first
glance, make K+ a good candidate for use as an osmolyte in
cells. Balanced against this is the observation that high
concentrations of inorganic cations often have deleterious effects on
enzyme catalytic rates (76). In most eubacteria, the
accumulation of K+ is an early response to an increase in
external NaCl. Glutamate is usually selectively accumulated as the
counterion (2, 8). However, the increased K+ is
often transient and is superseded by the accumulation of zwitterionic organic solutes such as proline or glycine betaine (GB)
(16). Thus, osmoadapted eubacteria tend to use zwitterionic
or nonionic solutes to counteract external osmotic pressure.
In contrast to eubacteria, most of the archaea examined have high
intracellular concentrations of inorganic cations, primarily K+, under optimal growth conditions. Table
1 provides values for intracellular
K+ concentrations in a range of archaea including organisms
grown in low-ionic-strength media (e.g., Methanobacterium
thermoautotrophicum) and extreme halophiles (e.g.,
Halobacterium halobium and Natronococcus occultus). Even in the nonhalophiles the intracellular
K+ concentration is relatively high (>0.5 M), suggesting
that under normal conditions these cells exist with high turgor
pressure if the intracellular K+ is free and not tightly
complexed to macromolecules. While there are no published data on
whether there are immediate changes in intracellular K+
levels with increased external NaCl, steady-state intracellular K+ levels have been measured in cells grown at different
NaCl concentrations (for examples, see Fig.
1). In many of the halotolerant
methanogens (e.g., Methanococcus thermolithotrophicus
[grown in medium with less than 1 M external NaCl],
Methanogenium cariaci, and Methanosarcina thermophila) and the halophilic Methanohalophilus
portucalensis, intracellular K+ varies with external
NaCl concentration, and hence it can be considered an osmolyte. In
other methanogens (e.g., Methanobacterium thermoautotrophicum), it is maintained at a constant level over a
moderate range of external NaCl and contributes to high turgor pressure
(15). However, in both M. thermolithotrophicus
and Methanobacterium thermoautotrophicum there appear to be
thresholds of external NaCl above which K+ accumulation
(and organic counterion accumulation as well) is compromised and is
seen to decrease (13, 60). At this point, if the cell is to
survive (i.e., resist water efflux and dehydration) it must alter its
osmoadaptation strategy. Methanobacterium
thermoautotrophicum is unable to adapt effectively and does not
grow at high concentrations of NaCl, while M. thermolithotrophicus alters its osmolyte pool and thus can survive
and grow in medium containing higher concentrations of NaCl.
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STRATEGIES OF OSMOADAPTATION IN ARCHAEA
TABLE 1.
Extracellular Na+ and intracellular
K+ concentrations in archaea

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FIG. 1.
Intracellular K+ as a function of external
NaCl in M. thermolithotrophicus (
) (data are from
reference 60 [micromoles/milligram of protein] and
were converted to moles/liter by using the conversion that 0.13 µmol
of solute/mg of protein corresponds to 0.1 M as determined in reference
15), Methanobacterium thermoautotrophicum
(
) (data from reference 13), and
Methanohalophilus portucalensis (
) (data are from
reference 36).
The highest accumulation of K+ among the archaea occurs within the halophilic family Halobacteriaceae (30). It has been reported that some Halobacterium spp. possess up to 5 M cell-associated K+, which is well beyond the solubility of KCl. This suggests that K+ is somehow bound to macromolecules in the cells, but analysis by 39K-nuclear magnetic resonance (NMR) spectroscopy has indicated that the bulk of the K+ exists in a free state within these cells (66). For other Halobacterium spp., intracellular Na+ can be exchanged for K+, creating an intracellular environment that has reduced K+ and Na+ gradients (34) but which still maintains a very high monovalent cation concentration inside. The concentration of intracellular K+ need not be the same as that of extracellular Na+ in extreme halophiles. For example, N. occultus grows optimally in medium containing 3.4 M NaCl; the concentration of intracellular K+ in this organism is 1.1 M (18). Likewise, in Methanohalophilus portucalensis grown in 2.0 M NaCl, the intracellular concentration of K+ is 0.76 M (36). Presumably the cytosolic environment of these cells has other components that are effective at balancing external osmotic pressure.
Salt-tolerant enzymes. To cope with the high intracellular
concentrations of K+, many archaea have evolved proteins
that are exceedingly rich in acidic amino acids (glutamate and
aspartate) compared to basic amino acid (arginine and lysine) residues
(29). For example, the relative acidities of ribosomal
proteins have been compared for a variety of archaea (primarily
methanogens) and some eubacteria (29). Even archaea grown in
low salt medium have acidic protein fractions (Table
2). The bias for acidic residues results
in a net negative charge on the protein surface that presumably
prevents folding into the native (active) structure unless a cation
counterion like K+ is present. For example, malate
dehydrogenase from H. halobium (67) requires high
salt concentrations in order to maximize activity. In addition to this
large excess of negatively charged amino acid residues, the
hydrophobicity of the proteins of halophilic archaea is reduced. This
in turn reduces the salting-out effects of K+ and allows
the protein to retain its flexibility under conditions of extreme
salinity. However, the requirement for K+ for proper
protein folding and stability imposes a limit on the effectiveness of
K+ as a compatible solute (76).
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Accumulation of organic solutes. Eukaryotic and eubacterial
organisms generally adapt to increased osmotic stress by accumulating
highly soluble organic compounds such as polyols (glycerol, arabitol,
mannitol, and glucosylglycerol [6, 24]), low-molecular-weight nonionic carbohydrates (sucrose, trehalose, and
glucose [28, 74]), free amino acids and their
derivatives (proline, glutamate, glycine,
-aminobutyrate, taurine,
and
-alanine [8, 16]), unique organic zwitterions
(tetrahydropyrimidines such as ectoine [25]),
methylamines (GB and trimethylamine-N-oxide [67]), and
-dimethylsulfoniopropionate
(71). In general, intracellular accumulation of organic
solutes by transport from the culture medium is often preferred over
their biosynthesis, and indeed, for certain solutes such as GB,
high-affinity uptake systems are available to scavenge any of the
material present in complex media.
The distribution of commonly occurring organic osmolytes found in
archaea falls into the same major classes as for eubacteria and
eukaryotes: (i) sugars and polyhydric alcohols (Table
3) and (ii) amino acids and derivatives
including methylamines (Table 4). Archaea
also accumulate some very unusual solutes that have no obvious
eubacterial or eukaryote counterpart (Table
5). There are striking similarities among
the carbohydrates and polyols that are used as osmolytes by eubacteria
and archaea (Table 3) with the exception that the majority of the
solutes in archaea are modified so that they are anionic. The addition
of a negative charge is accomplished with carboxylate, phosphate, and
sulfate groups. In the amino acid class, there are two osmolytes common to eubacteria and archaea: anionic L-
-glutamate and
zwitterionic GB. However, methanogenic archaea have developed a novel
strategy to produce amino acid-like molecules that are unlikely to
interact with any metabolic or biosynthetic machinery in the cells.
These anaerobic organisms synthesize and accumulate several
-amino acids to balance external osmotic stress (Table 4).
-Glutamate is
the anionic solute in this group with
-glutamine and
N
-acetyl-
-lysine as zwitterionic solutes.
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(i) Sugars and polyhydric alcohols.
Accumulation of polyol
phosphodiesters represents a relatively unique osmolyte strategy in
archaea. Glycerol is accumulated in response to external NaCl
concentrations by several species of yeast and algae (6, 67,
73). The hyperthermophile Archaeoglobus fulgidus
accumulates a novel charged version of this compound, diglycerol
phosphate (DGP), as its major intracellular organic solute
(44). In osmoadapted cells, DGP increases with both
increased NaCl and growth temperature, indicating that it behaves as an osmolyte in this organism. Another common polyol used by plants and
mammals for osmotic balance is myo-inositol. Archaea use a related phosphorylated inositol,
di-myo-inositol-1,1'-phosphate (DIP), for osmotic balance.
This rather unusual phosphodiester compound has been identified in
hyperthermophilic organisms, including Methanococcus igneus
(12), Pyrococcus woesei (65), P. furiosus (42), Thermotoga maritima
(43), and Pyrodictium occultum (44). T. maritima is not an archaeon but shares many
characteristics with archaeal hyperthermophiles. Both inositol rings of
the DIP from M. igneus and Pyrococcus sp. have
L-stereochemistry; DIP isolated from T. maritima
is reported to occur in chiral and meso-forms. While intracellular DIP
concentrations increase in M. igneus with external NaCl,
other solutes, notably
-glutamate, show a stronger increase with
increasing NaCl (12, 43). Perhaps more strikingly, DIP
levels also correlate with hyperthermophily. The optimal growth temperature of M. igneus is 85°C. In this organism, DIP is
produced only at growth temperatures of 80°C or higher
(12). This trend was also seen with P. furiosus,
where the concentration of DIP was found to be higher at supraoptimal
growth temperatures (98 to 101°C) and with Thermotoga
neapolitana (43). These results suggest the possibility
of DIP acting as a preferred thermoprotectant in addition to its role
as an osmolyte.
-mannosylglycerate and mannosyl-DIP (43).
Trehalose, a nonreducing glucose disaccharide, is frequently found in
organisms subject to dehydration. This disaccharide occurs at high
levels in Pyrobaculum aerophilum and at lower levels in
several other thermophilic archaea (44). Trehalose synthesis is favored in Sulfolobus solfataricus when it is grown on
glucose as the energy and carbon source (49). In a related
organism, Sulfolobus acidocalarius, the genes for the three
enzymes for trehalose biosynthesis (i.e., those encoding
maltooligosyltrehalose trehalohydrolase, glycogen-debranching enzyme,
and maltooligosyltrehalose synthase) have been cloned (45).
A negatively charged version of this solute, 2-sulfotrehalose, exhibits
osmotic behavior in the halophilic, alkaliphilic archaea
Natronococcus and Natronobacterium spp.
(18). Sulfotrehalose, a 1
1
-linked glucose
disaccharide with a sulfate group attached to one of the glucose
moieties at the C-2 position, is the first sulfated sugar synthesized
and accumulated as a compatible solute in any organism. In N. occultus, the intracellular concentration of sulfotrehalose
provides the charge balance for intracellular K+. Sulfate
groups occur in biological molecules in both carbohydrate (e.g.,
heparin sulfate, which contains bis-sulfated glucosamine and
sulfated N-acetylglucosamine) and lipid (e.g., sulfated
triglycosylarchaeol) pools (46). In both cases the sulfate
is esterified to the appropriate hydroxy group by a sulfotransferase
with 3-phosphoadenosine-5' phosphosulfate as the activated sulfate
donor. In the case of Natronobacteria, sulfotrehalose biosynthesis may
be linked to glycolipid biosynthesis since a number of sulfated
carbohydrates have been detected in the glycolipids of archaeal
halophiles (35, 72). Since intracellular sulfotrehalose
levels respond to external NaCl, linking osmolyte enzymology with
membrane components might generate a useful regulatory scheme.
Another unusual solute accumulated by archaea as an osmotic response is
-galactopyranosyl-5-hydroxylysine (38). This unusual compound has been detected in Thermococcus litoralis.
However, it is not synthesized de novo and is thought to be
internalized from the peptone in the growth medium.
(ii)
-Amino acids and derivatives.
Zwitterionic amino
acids, such as proline, are important osmoprotectants in a variety of
bacteria. These are usually internalized from the medium by osmotically
induced proline transport systems, ProP and ProU (67), that
have been shown to be sodium dependent (27). To date there
are no reports of proline being accumulated in response to osmotic
stress in archaea. Another relatively common eubacterial zwitterionic
osmolyte is the cyclic amino acid derivative ectoine. Ectoine is
synthesized de novo by the majority of heterotrophic halotolerant
eubacteria under conditions of high salt (17, 24, 25) and is
assumed to have a protective function similar to those of proline and
GB (31). However, ectoine has not been detected in archaea.
-glutamate (Table 4).
L-
-Glutamate is also a precursor and a nitrogen donor
for the biosynthesis of several amino acids. In eubacteria the
accumulation of this amino acid can occur by transport or by de novo
synthesis. Archaea also use L-
-glutamate for osmotic
balance with patterns similar to those seen in eubacteria.
L-
-Glutamate is often accumulated in cells grown in
suboptimal NaCl-containing medium. For example, the haloalkaliphilic archaeon N. occultus accumulates glutamate when grown in a
defined medium with a NaCl concentration less than 3.0 M, where its
optimum NaCl is 3.4 M (18); this is supplanted by
sulfotrehalose at higher NaCl concentrations.
L-
-Glutamate is present at moderate concentrations
(>0.02 M) in most methanogens, although in some cases its
concentration does not vary strongly with external salt concentrations.
For example, the L-
-glutamate concentration in Methanobacterium thermoautotrophicum grown in medium with no
added NaCl is 0.60 M; increasing the concentration of external NaCl to
0.4 M (a rather large change) induces a relatively small increase in
the concentration of L-
-glutamate to 0.10 M (Fig.
2) (13). Many thermophilic
methanogens (e.g., M. thermolithotrophicus and M. igneus) synthesize and accumulate glutamate when grown on a defined inorganic medium; as shown in Fig. 2 for M. thermolithotrophicus, the L-
-glutamate
concentration in these organisms varies linearly with that of external
NaCl. At 1.0 M external NaCl, the L-
-glutamate concentration is ~0.60 M. However, studies of the halotolerant, moderately halophilic, and extremely halophilic methanogens, including several Methanohalophilus strains (36), all
showed moderate concentrations of glutamate which were relatively
invariant with external NaCl (Fig. 2). Since glutamate is a substrate
for a variety of cellular enzymes, its concentration in osmoadapted
archaea may be constrained with certain limits.
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(iii)
-Amino acids and derivatives.
Several
-amino
acids, notably
-glutamate,
-glutamine, and
N
-acetyl-
-lysine (Table 4), function as
compatible solutes in methanogenic archaea (36, 56-60, 62, 68,
69).
-Glutamate (
-aminoglutaric acid), an organic anion,
accumulates in response to increasing external NaCl in several
halotolerant thermophilic Methanococcus species (12,
60) as well as in mesophiles (e.g., Methanogenium
cariaci, a marine methanogen [60]). A
zwitterionic derivative,
-glutamine, functions as the osmolyte of
choice at the highest external NaCl concentrations in several
Methanohalophilus species (36, 63). A rather
different zwitterionic
-amino acid derivative,
N
-acetyl-
-lysine, occurs as the
predominant compatible solute in response to elevated external NaCl
levels in various methanogenic archaea isolated from both marine and
nonmarine origins (e.g., Methanosarcina thermophila,
Methanogenium cariaci, Methanohalophilus sp., and
Methanococcus sp. [36, 58, 60, 68, 69]).
Like their L-
isomers, the
-amino acids are extremely
soluble, but they are not metabolized significantly by cells. The
stability of
-amino acid pools to turnover has been shown by NMR
analyses of 13C-pulse/12C-chase (or
15N-pulse/14N-dilution) labeling experiments
(56, 60). In these experiments, isotope in
L-
-glutamate pools is rapidly lost as this solute is
used to synthesize other amino acids and proteins, etc., while label in
the
-amino acids turns over very slowly in growing cultures. This
property makes the
-amino acids true compatible solutes.
-glutamine, and
N
-acetyl-
-lysine) to counteract osmotic
stress. Under adapted conditions, all three compounds (the
-amino
acid derivative and the two
-amino acids) are poorly metabolized by
the cells (56) and hence are excellent compatible solutes.
However, any rationale for why three zwitterionic amino acids are
synthesized and accumulated is lacking.
(iv) Miscellaneous osmolytes: cDPG and TCH.
Several other
unusual compounds have been detected at moderate to high concentrations
in archaea. These organic polyanions are counterions to the high
intracellular K+ concentration and contribute to the high
turgor pressure of the organisms in which they occur. As noted before,
the thermophile Methanobacterium thermoautotrophicum has a
high intracellular K+ concentration that is relatively
independent of external NaCl up to 0.4 M NaCl (see Fig. 1). The cell
wall of this organism is extremely robust and is critical for
maintaining cell volume under conditions where the organism is clearly
not osmotically balanced. Both the Marburg and
H strains of this
species have similar growth requirements (5). However, they
balance the high K+ by using different ratios of organic
polyanions (13). In Methanobacterium thermoautotrophicum
H, the major intracellular solutes are
cyclic-2,3-diphosphoglycerate (cDPG) and L-
-glutamate;
1,3,4,6-tetracarboxyhexane (TCH) is a minor component (for structures
see Table 5). In the Marburg strain TCH levels are considerably higher,
and the level of this solute increases in response to decreased levels
of L-
-glutamate and other solutes with increased
external NaCl. Since TCH has a
4 charge and cDPG has a
3 charge at
physiological pH, the intracellular concentrations of these anions are
far lower than that of intracellular K+. None of these
anionic organic solutes exhibits a large osmotic response over a wide
range of external NaCl concentrations (0.01 to 0.4 M); the total
concentration of negative charges on the solutes correlates directly
with the K+ concentration (13). Both
K+ and organic solute concentrations begin to decrease
between 0.4 and 0.65 M NaCl. The observation of these novel solutes in
Methanobacterium thermoautotrophicum connects other cellular
processes to maintenance of turgor pressure (and K+ charge
balance). cDPG has been shown to be involved in carbon fixation in this
organism (26). High levels of cDPG have also been detected
in other more thermophilic methanogenic archaea, including
Methanopyrus kandleri and Methanothermus fervidus
(44), where it is likely to have a role as an osmolyte and a
counterion to intracellular K+. TCH, as a structural unit
of methanofuran, connects osmotic effects and/or turgor pressure with
methanogenesis components in these organisms (26).
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BIOSYNTHESIS OF OSMOLYTES |
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A detailed understanding of the osmotic behavior of archaea (or any organism for that matter) requires knowledge of the biosynthetic pathways or uptake systems for osmolytes and how they are linked to external NaCl. A number of the osmolytes used by archaea are novel compounds and as such present new wrinkles in standard biochemistry and in some cases novel enzymatic transformations. Several of these are discussed below with comments on which steps in a given pathway are the most likely to be regulated or affected by external NaCl.
Conversion of glucose-6-phosphate to DIP: novel enzymes, novel compounds, and high temperatures. DIP biosynthesis in M. igneus (and presumably the other hyperthermophilic archaea where it occurs) consists of the following four steps (9) starting with D-glucose 6-phosphate (Fig. 3): (i) conversion of glucose-6-phosphate to L-myo-inositol-1-phosphate (I-1-P) by I-1-P synthase; (ii) conversion of I-1-P to myo-inositol by a specific phosphatase, I-1-P phosphatase; (iii) conversion of I-1-P to cytidine diphosphoinositol (CDP-I) with CTP as the carrier molecule in the phosphoryl transfer of the CTP:I-1-P cytidylyltransferase reaction, and (iv) nucleophilic attack of the free hydroxyl group of C-1 of myo-inositol on CDP-I to produce DIP (DIP synthase). Steps i and ii have been elucidated in detail for plants and other organisms. Analogs of step iii occur in many cells as part of phospholipid biosynthesis, although this is not the way phosphatidylinositol is synthesized in cells (CDP-diacylglycerol is the activated species). Step iv, the novel DIP synthesis reaction, is based on phosphatidylinositol synthesis in both eukaryotic and bacterial cells with myo-inositol attacking CDP-I instead of the CDP-diacylglycerol. The enzymatic steps unique to DIP and not to inositol lipids are the CTP:I-1-P cytidylyltransferase and DIP synthase reactions. Thus, one might suggest that these would be steps sensitive to external osmotic pressure.
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Archaea include a large number of hyperthermophiles, and these are often isolated from environments with moderate to high concentrations of NaCl. Whereas growth temperature appears to have little effect on the accumulation of amino acid type osmolytes, it can have a large impact on synthesis and accumulation of sugar and polyol solutes. The effects of growth temperature on DIP biosynthesis in M. igneus have been explored in detail. In the case of M. igneus DIP does not contribute to the osmotic balance until the growth temperature is higher than 80°C (12).
Why is DIP accumulated only at high growth temperatures? In vitro
studies of the temperature dependence of enzyme activities in M. igneus involved in biosynthesis of DIP provide some insight into
this question. The condensation of CDP-I and myo-inositol by
DIP synthase in crude protein fractions has a high activation energy,
~120 kJ · mol
1. For comparison, the first two
steps in the DIP biosynthetic pathway, I-1-P synthase and I-1-P
phosphatase, exhibit much lower activation energies, 60 to 70 and ~50
kJ · mol
1, respectively (9). At lower
growth temperatures, any I-1-P generated may be hydrolyzed to
myo-inositol, possibly for incorporation into lipids. I-1-P
cannot build up to levels needed for conversion to CDP-I and eventual
DIP synthesis. As the growth temperature is increased, however, not
only is more I-1-P generated but DIP synthase activity is enhanced. DIP
synthesis in other thermophiles should be examined to see if this
hierarchy of activation energies is part of a universal trend or is
unique to this methanogen.
From "X" to
-glutamate to
-glutamine ... .
-Glutamate is the most ubiquitous of the
-amino acids found
in archaea and a few eubacteria as well. However, the biosynthetic
pathway for this species is not yet known, although information is
available on what potential pathways do not generate
-glutamate in
methanogens. Studies of transaminase activities in M. thermolithotrophicus clearly show that
-ketoglutarate cannot be
converted to
-glutamate by using alanine or aspartate as nitrogen
donors in the reaction (41a). In the same fashion both
13C- and 15N-labeling experiments and
incubation of crude protein extracts with
-glutamate do not yield
the
-isomer (which would require a glutamate aminomutase activity)
(41a). Two other routes to
-glutamate that involve
soluble precursors can be proposed. (i)
-Ketoglutarate is reduced to
-hydroxyglutarate, which is then dehydrated to glutaconic acid.
Addition of ammonia to the glutaconic acid would then generate
-glutamate. (ii) A three-carbon propionate unit with an aldehyde or
amino group at C-3 is complexed with pyridoxal-5-phosphate and then
condensed with an activated two-carbon unit (likely to be
acetyl-coenzyme A). Since
-hydroxyglutarate has been detected in
methanogens, it is possible that the first scheme is operational
although there is at present no firm evidence. Clearly this is an area
for further investigation.
Biosynthesis of
-glutamine in Methanohalophilus
portucalensis occurs by the activity of a glutamine synthetase on
-glutamate. The accumulation of
-glutamine as an osmolyte at high
concentrations of external NaCl is interesting in view of what is known
about glutamine synthetases (GS) from a large number of organisms. In general this multimeric, highly (and diversely) regulated enzyme converts
-glutamate to
-glutamine poorly (i.e., high
Km and low Vmax compared
to those of
-glutamate as a substrate) (33). The one
archaeal GS that has been purified (from Methanobacterium ivanovi) and characterized was not examined for its ease in
converting
-glutamate to
-glutamine. In vitro,
Methanohaliphilus portucalensis uses
-glutamate as a
direct precursor of
-glutamine (63a), suggesting that the
GS from this methanogen has different kinetic and regulatory properties
from the GS of eukaryotes and eubacteria. The
Vmax for this conversion is ~0.14 that for
L-
-glutamate conversion to
-glutamine. However, while
cells supplemented with exogenous
-glutamate (under conditions where
the
-glutamate was internalized) showed enhanced
-glutamine, the
neutral
-amino acid was not the major solute (63). This
might suggest that GS conversion of
-glutamate to
-glutamine and
accumulation of this zwitterion (as one of the trio of GB,
N
-acetyl-
-lysine, and
-glutamine) are
regulated indirectly by external NaCl.
N
-Acetyl-
-lysine: control of lysine
aminomutase? At low osmolarity (<1 M NaCl)
-glutamate and
-glutamate are the primary organic solutes in M. thermolithotrophicus. When adapted to growth at higher salinity
(Fig. 4), the organism accumulates N
-acetyl-
-lysine, and it rapidly becomes
the major solute as external NaCl is increased still further (59,
62). Nothing is known about what regulates the transition from
accumulation of the anionic glutamate isomers to accumulation of the
zwitterion at high external NaCl. Perhaps K+ levels reach a
saturation point where further cation accumulation would be detrimental
to cell function. In order to avoid this the cell adapts by
accumulation of something zwitterionic. Another possibility is that
N
-acetyl-
-lysine biosynthesis is
controlled by Na+ and/or K+ and this solute is
synthesized only when intracellular K+ levels are high. The
synthesis of N
-acetyl-
-lysine involves
lysine 2,3-aminomutase conversion of
-lysine to
-lysine followed
by acetylation of the side chain amino group (56, 60). Since
-lysine is necessary for all protein biosynthesis, it is unlikely
that any of its biosynthetic enzymes are osmotically regulated. A more
likely way of controlling N
-acetyl-
-lysine
synthesis and accumulation would be to regulate lysine
2,3-aminomutase. Lysine aminomutase activities from bacteria that
metabolize
-lysine as a carbon and nitrogen source have been
purified and characterized (10, 22), and a very oxygen labile lysine aminomutase activity has been detected in anaerobic extracts of M. thermolithotrophicus (14).
|
Further work must be done to better understand what controls the
osmoadapted response. However, what is known is that K+
plays an important role in the immediate (and transient) response of
this organism to hyperosmotic (increased NaCl) or hypoosmotic (decreased NaCl) shock (14). Within the first few minutes
after transfer to the higher-NaCl-containing medium, M. thermolithotrophicus internalizes K+. This is followed
by a decrease to steady-state levels over a time course of 15 to 20 min. Once the K+ reaches a new steady-state concentration,
synthesis and accumulation of L-
-glutamate occur. The
K+-
-glutamate pair functions as a temporary osmolyte.
Once growth of the M. thermolithotrophicus culture begins,
typically 60 to 90 min after the increase in NaCl concentration, the
nonmetabolizable zwitterion
(N
-acetyl-
-lysine) is synthesized and
accumulated. A schematic diagram suggesting the steps in the osmotic
response of this organism is shown in Fig. 4B. That
N
-acetyl-
-lysine accumulation occurs in
osmoadapted cells (i.e., after the lag phase) is consistent with the
hypothesis that one of its biosynthetic enzymes is not available in
cells grown and adapted to lower NaCl.
GB: methylation of glycine depends on intracellular K+. Methanohalophilus portucalensis is relatively unique in the archaeal domain in that it can synthesize GB de novo (36). The biosynthesis of GB in this organism occurs by methylation of glycine (56) with S-adenosylmethionine as the methyl donor (37). More importantly, in vitro studies show that the methylation reactions are K+ dependent, with little betaine accumulating below 0.4 M K+; at this potassium concentration sarcosine was the major product. K+ concentrations above 0.4 M enhanced GB synthesis from sarcosine and N,N-dimethylglycine (37). This observation suggests that control of betaine synthesis is modulated by intracellular K+; this cation may also function as an intracellular signal for osmoregulation in M. portucalensis.
| |
FUTURE DIRECTIONS |
|---|
Studies of osmoadaptation in many organisms have shown
that this is a complex process that involves osmolyte accumulation, solute discrimination, control of ion flux, signaling, and change in
protein expression. The last of these, change in protein expression, has been explored in yeast and mammals (7) but has not been examined in archaea, with the exception of the halophilic archaeon Haloferax volcanii. Protein expression, as determined at the
gene and protein levels, in this archaeon is affected by changes in external NaCl (21, 47). Differential expression occurs under both low and high salt conditions. Several of these proteins may be
heat shock proteins, but it is possible that others may have more
specific roles in osmoregulation (synthesis of osmolytes or transport
of ions or solutes, etc.). The end result of osmoadaptation, specific
solute accumulation, has been characterized for many archaea. However,
the physiological and biochemical details of how these solutes are
accumulated are not well understood. A number of unanswered questions
remain regarding these cells. For example, the transient response of
M. thermolithotrophicus to increased external NaCl is
similar to that of the eubacterium Escherichia coli. In
E. coli, there is a rapid accumulation of excess
K+, which then decreases to a steady state, followed by
accumulation of L-
-glutamate. Further changes in the
L-
-glutamate pool over a longer time course lead to a
redistribution of solutes that reflects the composition of osmoadapted
cells at the higher NaCl growth conditions. Is this a general response
in other archaea as well? Additionally, why do many of these cells
synthesize several different solutes (i.e., Methanohalophilus
portucalensis uses three zwitterions and M. igneus uses
three anions) rather than produce just one solute for osmotic balance?
What is the biochemical basis for why some cells change osmolyte
strategies as a function of external NaCl or growth temperature (i.e.,
why is N
-acetyl-
-lysine produced in
M. thermolithotrophicus only at high salt concentrations).
Given the unusual collection of archaeal osmolytes, a deeper
understanding of the protective effect of these solutes on
macromolecular structure will also be needed to shed light on
mechanisms of osmoregulation and osmoadaptation.
| |
ACKNOWLEDGMENT |
|---|
This work has been supported by grant DE-FG02-91ER20025 (to M.F.R.) from the Department of Energy Biosciences Division.
| |
FOOTNOTES |
|---|
* Corresponding author. Mailing address: Merkert Chemistry Center, Boston College, Chestnut Hill, MA 02467. Phone: (617) 552-3616. Fax: (617) 552-2705. E-mail: mary.roberts{at}bc.edu.
| |
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