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Applied and Environmental Microbiology, May 1999, p. 1834-1842, Vol. 65, No. 5
0099-2240/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Formation of Bound Residues during Microbial
Degradation of [14C]Anthracene in Soil
M.
Kästner,1,*
S.
Streibich,1
M.
Beyrer,1
H. H.
Richnow,2 and
W.
Fritsche1
Institute of Microbiology, Friedrich Schiller
University, D-07743 Jena,1 and Institute
for Biogeochemistry and Marine Chemistry, University of Hamburg,
D-20146 Hamburg,2 Germany
Received 14 October 1998/Accepted 8 February 1999
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ABSTRACT |
Carbon partitioning and residue formation during microbial
degradation of polycyclic aromatic hydrocarbons (PAH) in soil and soil-compost mixtures were examined by using
[14C]anthracenes labeled at different positions. In
native soil 43.8% of [9-14C]anthracene was mineralized
by the autochthonous microflora and 45.4% was transformed into bound
residues within 176 days. Addition of compost increased the metabolism
(67.2% of the anthracene was mineralized) and decreased the residue
formation (20.7% of the anthracene was transformed). Thus, the higher
organic carbon content after compost was added did not increase the
level of residue formation. [14C]anthracene labeled at
position 1,2,3,4,4a,5a was metabolized more rapidly and resulted in
formation of higher levels of residues (28.5%) by the soil-compost
mixture than [14C]anthracene radiolabeled at position C-9
(20.7%). Two phases of residue formation were observed in the
experiments. In the first phase the original compound was sequestered
in the soil, as indicated by its limited extractability. In the second
phase metabolites were incorporated into humic substances after
microbial degradation of the PAH (biogenic residue formation). PAH
metabolites undergo oxidative coupling to phenolic compounds to form
nonhydrolyzable humic substance-like macromolecules. We found
indications that monomeric educts are coupled by C-C- or either bonds.
Hydrolyzable ester bonds or sorption of the parent compounds plays a
minor role in residue formation. Moreover, experiments performed with 14CO2 revealed that residues may arise from
CO2 in the soil in amounts typical for anthracene
biodegradation. The extent of residue formation depends on the
metabolic capacity of the soil microflora and the characteristics of
the soil. The position of the 14C label is another
important factor which controls mineralization and residue formation
from metabolized compounds.
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INTRODUCTION |
For two decades formation of
so-called nonextractable bound residues from 14C-labeled
polycyclic aromatic hydrocarbons (PAH) has been observed in
investigations of the bioavailability and biodegradability of these
compounds in soil (13, 20, 22, 24, 25, 30, 40). However, the
formation processes and chemical structures of these residues are still
not understood. Remobilization of the parent PAH compounds from bound
residues after soil bioremediation techniques are used may result in a
continued risk to human health.
Many microorganisms are able to metabolize PAH (9, 17, 53).
Several bacteria mineralize PAH that have up to four aromatic rings and
use them as a source of carbon and energy. Microbial degradation
proceeds by successive cleavage of the aromatic rings. ortho-Hydroxy aromatic acids are formed after degradation of
each ring. These metabolites accumulate in some organisms and are also detected in the environment (15, 21, 23, 34, 40). Moreover, PAH are oxidized to phenolic metabolites by cometabolic processes in
some microorganisms. Nonspecific oxidation reactions catalyzed by
extracellular enzymes of white rot fungi lead to the formation of a
variety of quinones and hydroxylated aromatic compounds. In most cases
these metabolites are not metabolized further by the organisms and may
serve as potential substrates for coupling to the humic soil matrix.
The contributions of several PAH metabolites to the formation of bound
residues have been described previously (40, 42).
Nonextractable residues are formed in soils during application of
pesticides (8, 12, 33, 36). After extraction with organic
solvents, some portions of the active compounds remain in the soil.
These bound residues can be quantified only by using 14C-labeled parent compounds. However, this labeling
technique provides no information about chemical structure. The
residues may consist of the parent compound, of biogenic or chemical
metabolites, or of labeled carbon assimilated by microorganisms after
metabolism of the parent compound. Residues from biomass or highly
degraded compounds have no ecotoxicological relevance and are not
considered bound residues in terms of the International Union of Pure
and Applied Chemistry (IUPAC) definition of pesticides (43).
However, bound residues cannot be distinguished from biogenic residues, since the chemical structures of the residues are not known. The chemical reactivity of an active compound or of a metabolite governs the formation of bound residues, whose levels may range from 7 to 90%
of the quantity applied (3, 8, 12, 33). Many pesticides are
partially degraded, and the metabolites are involved in the formation
of bound residues (19, 26, 52). However, the binding types
of the metabolites are not known in most cases. By using
15N-labeled substances, covalent bonds of metabolites from
phenylamide herbicides to humic substances have been identified by
modern 15N nuclear magnetic resonance spectroscopy
(54). Functional groups, such as hydroxylic, carboxylic,
nitro, amino, or phosphate groups, may contribute to cross-linking
reactions with compounds in the soil organic matrix. Phenolic or
aniline compounds have the greatest tendency to form bound residues
(43).
Generally, microbial degradation of mineral oil compounds and PAH in
soil leads to mineralization accompanied by the formation of bound
residues. The degradation activity increases after organic additives
like compost are added and depends on the presence of the solid soil
matrix (37). However, the carbon mass balances of the parent
compounds and the CO2 produced reveal that there are
considerable losses, which account up to 50% of the carbon applied
(30, 49). The aim of the present work was to trace the
partitioning of 14C from different labeled anthracenes
under various conditions during microbial degradation in soil. The
potential of typical PAH metabolites to react in cross-coupling
reactions was investigated, and mechanisms of residue formation were evaluated.
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MATERIALS AND METHODS |
Chemicals.
Unless indicated otherwise, all chemicals were
purchased from Merck (Darmstadt, Germany). The following radiochemicals
were obtained from Amersham, Braunschweig, Germany:
[9-14C]anthracene (specific activity, 559 MBq/mmol;
radiochemical purity, >96%) and
[1,2,3,4,4a,10a-14C]anthracene (specific activity, 451 MBq/mmol; purity, >98%). [9-14C]anthraquinone (purity,
>95%) was prepared from [9-14C]anthracene after
oxidation and was isolated by using preparative thin-layer
chromatography (TLC).
Soil.
The experiments were carried out with soil samples
taken from the Ah horizon of a Luvisol (organic C content, 1%) from an uncontaminated, rural area near Hamburg, Germany. The soil was sieved
so that the particle size was <2 mm. The compost used for the
experiments was obtained from the Hamburg composting plant (Hamburg,
Germany; organic C content, 12.7%; total N content, 1.4%; biomass
content, 1.4 g of C/kg; C/N ratio, 9.0) and was sieved so that the
particle size was <4 mm. The soil materials used have been described
previously (30, 31) and were used for several experiments
(10, 40, 41). All of the concentrations given in this paper
were based on the dry weight of soil.
Anthracene degradation experiments.
Anthracene degradation
experiments were conducted with 2 kg of soil material in continuously
aerated 3-liter soil bioreactors (30). The 14C
contents in the reactors were measured in the soil and in the waste gas
by measuring the sorption of 14CO2 with NaOH
and the sorption of volatile metabolites with ethylene glycol
monomethyl ether. 14C-labeled anthracene and unlabeled
anthracene were dissolved in ethyl acetate and were mixed with the soil
material by a method described previously (30). The
radioactivity in the soil material was 125 kBq/kg of soil when
[9-14C]- or [1,2,3,4,4a,5a-14C]anthracene
was used, and the total applied anthracene concentration was 100 mg/kg.
Soil and compost were mixed at a ratio of 80:20 (dry weight/dry
weight). The final water content was adjusted to 60% of the water
holding capacity (~84%, dry weight). Similar to anthracene
degradation, degradation of anthraquinone was examined by using 125 kBq
of [9-14C]anthraquinone per kg and a total applied
anthraquinone concentration of 100 mg/kg. Soil samples were taken from
a mixture of three independent soil profiles (~30 g) from the reactor
column, which were obtained by using a glass pipe connected to a vacuum
pump. The contents of the reactors were mixed completely after
sampling. The 14C distribution in soil was examined by
performing sequential extraction procedures and by combustion (see
below). The effects of bacteria or fungi on anthracene degradation and
formation of bound residues from anthracene were investigated in
previously described batch experiments (31) by using a 250-g
soil-compost mixture and [1,2,3,4,4a,5a-14C]anthracene.
The activity of fungi was inhibited by cycloheximide (4 g/kg), and
bacteria were inhibited by a mixture of tetracycline, ampicillin, and
streptomycin (4 g of each per kg of soil). The efficiencies of these
doses were determined by incubating soil particles on several agar media.
Incubation of soil under a 14CO2
atmosphere.
To estimate the contribution of CO2 to the
formation of bound residues during microbial degradation of anthracene,
250-g portions of a soil-compost mixture were incubated in 1.5-liter
vessels with 14CO2 in the absence of light.
Oxygen was provided with a flexible gas bag (capacity, 5 liters), which
was connected to the culture vessel by a canula and a silicon septum.
The quantity of CO2 added was similar to the amount
produced by ~70% mineralization of anthracene in the reactor
experiments. Tubes containing 1.4 mmol of NaHCO3 and 6.2 kBq of [14C]NaHCO3 (~700 mmol of organic C)
were put into each culture vessel. After the vessels were closed,
concentrated H3PO4 was added dropwise to the
tubes by using a syringe with a long canula inserted through the
silicon septum. The acid was added until the solid carbonate was
completely converted to CO2. After 90 days of incubation, the gas atmosphere in the vessels was evacuated by passing two vessels
to absorb the residual 14CO2 with 4 N KOH. The
amount of radioactivity bound to the soil matrix was determined after
the soil was extracted by procedures similar to the procedures used in
the other experiments. A similar experiment was conducted after the
microorganisms in the soil were inactivated in a CHCl3
atmosphere for 24 h. This procedure repressed the respiration in
the soil to values that were less than 0.5% of the values obtained for
native soil. The residue formation by carbonates in the native
soil-compost mixture was analyzed after acidification of 0.5 g of
soil with 5 ml of concentrated H2SO4 in a serum
flask at 80°C. The 100-ml vessel was purged with decarbonated air (2 liters/h), and the released 14CO2 was trapped
for 1 h with Carbosorb (Packard, Frankfurt, Germany). The
incorporation of 14CO2 into the organic soil
matrix was determined by measuring oxidation of the matrix. The
acidified soil suspension was supplemented with 100 mg of
FeSO4 · 7H2O, and a 30%
H2O2 solution was added dropwise until the
total amount added was 20 ml. The solution was boiled for 3 h, and
the evolved CO2 in the exhaust gas was trapped in Carbosorb
until the solution became translucent and slightly yellow. The residues
in the inorganic solution after oxidation were assessed as
14CO2 fixation in clay minerals and silicates.
Formation of humic substance-like macromolecules from PAH
metabolites.
PAH metabolites were polymerized in 1-liter
Erlenmeyer flasks containing 750 ml of H2O and 7.5 ml of
phosphate buffer (1.3 g of KH2PO4 per liter,
2.1 g of Na2HPO4 per liter; pH 7.0) at 28°C in the dark. The reaction was started by adding the following bivalent metal cations (per liter): 325 µg of Mn2+
(MnSO4 · H2O), 40 µg of
Fe2+ (FeSO4 · 7 H2O), and 46 µg of Zn2+ (as ZnSO4 · 7 H2O). The metabolites added were 50 mg of catechol per
liter, 50 mg of 1-hydroxy-2-naphthoic acid per liter, 50 mg of
3-hydroxy-2-naphthoic acid per liter, 10 mg of 1-naphthol per liter,
2.5 mg of 9-hydroxyphenanthrene per liter, 2.5 mg of 9,10-anthraquinone per liter, and 2.5 mg of 9,10-phenanthrenquinone per liter. Naphthol, hydroxyphenanthrene, and the quinones that were hardly soluble in water
were added in acetone solutions. Brown precipitates were observed in
the reaction mixtures after 1 to 2 days. Each suspension was separated
by ultrafiltration with Diaflow ultrafiltration membranes (Amicon,
Witten, Germany) with the following molecular weight exclusion values:
type YMIO, >10,000; type YM3, >3,000; type YMI, >1,000; and type
YC05, >500. The absorption spectra of the fractions were determined
with a Lambda 2 photometer (Perkin-Elmer, Überlingen, Germany).
The amounts of residual monomeric parent substances were determined by
TLC and high-performance liquid chromatography (HPLC).
Analytical procedures.
Three grams of soil was added to a
Hungate tube (Bellco International, Feltham, United Kingdom), and then
3 ml of ethyl acetate was added (10). The tube was closed
and extracted for 30 min by ultrasonication. After centrifugation,
aliquots of the extracts obtained were analyzed. To extract PAH still
bound to the soil matrix after extraction with organic solvents,
alkaline hydrolysis in a methanol-NaOH solution was performed
(10). The amounts of nonextractable bound residues were
calculated after two extractions by determining the difference between
the total radioactivity in the soil and the radioactivity in the
extracts. The accuracy of these calculations was checked for several
samples by combustion of the extracted soil material. The radioactivity
was quantified by
-scintillation counting after 1-ml portions of the
extracts were added to 10-ml portions of a toluene scintillation
cocktail containing 8.25 g of 2,5-diphenyloxazol, 0.25 g of
1,4-bis(5-phenyl-2-oxazolyl)-benzene, and 1,000 ml of toluene. The
activities of the samples obtained from the alkaline hydrolysis
procedure and of NaOH were quantified by using a scintillation cocktail
containing 450 ml of toluene scintillation cocktail, 450 ml of Triton
X-100, and 100 ml of methanol. To separate fulvic acids, humic acids,
and humines, preextracted unhydrolyzed soil samples (3 g) were mixed
with 12 to 13 ml of 0.5 M NaOH (37). After mixing for
15 h, the samples were centrifuged. The precipitates contained the
insoluble humines, and the supernatants contained humic and fulvic
acids. Five milliliters of each supernatant was acidified with
concentrated hydrochloric acid (pH <1) to precipitate the humic acid
fraction. The resulting solution contained the fulvic acid fraction.
The precipitated humic acids were redissolved in 5 ml of 0.5 M NaOH.
The partitioning of the radioactivity into these fractions was
determined by combustion or by liquid scintillation counting. The
standard deviations in these analyses ranged between 5 and 9%.
Total 14C radioactivity was analyzed by combustion of
0.5 g of soil with a model Bio-Oxidizer OX 500 apparatus (Zinsser
Analytik, Frankfurt, Germany). The samples were completely oxidized to
14CO2, which was absorbed with scintillation
cocktail containing 1,250 ml of Quickszint 212 (Zinsser Analytik), 750 ml of ethanolamine, and 750 ml of methanol. The levels of recovery in
the combustion experiments ranged from 97 to 102%. The standard
deviations for triplicate analyses were 3 to 9%. 14C
radioactivity was quantified by
-scintillation counting with a model
LSC 1410 spectrometer (Wallac, Turku, Finland). Triplicate analyses
were performed with external standardization, quenching, and
chemoluminescence correction. The overall standard deviations for
14C recovery ranged from 7 to 10% (combustion of the soil,
3 to 9%; extraction, 1.5 to 4%; and determination of
14CO2, 1.8 to 3%).
PAH were quantified by HPLC by using a high-pressure gradient mixture,
a model AS 360 autosampler, a model PS 322 pump, and a model SFM 25 fluorescence detector (Kontron, Neufarrn, Germany). The PAH were
separated on a type RP 18-PAH column (ET 150/4; NUCLEOSIL 100-5C18 PAH;
5 µm; Macherey and Nagel, Düren, Germany) at 23°C. The column
was first eluted at a flow rate of 1 ml/min with a 70% methanol-water
mixture for 6 min. For the next 19 min a linear gradient ending in
100% methanol was used. After 25 min the column was eluted with 100%
methanol up to 47 min. Fluorescence was detected up to 16.2 min with an
excitation wavelength of 265 nm and an emission wavelength of 350 nm,
up to 28.1 min with an excitation wavelength of 265 nm and an emission
wavelength of 430 nm, and up to 47 min with an excitation wavelength of
295 nm and an emission wavelength of 460 nm. Metabolites of the
[14C]PAH were determined by TLC and by radio-HPLC. Peak-
or time-controlled collection of samples of the HPLC effluent in
scintillation vessels was possible after the detector was connected to
a model SF 2120 sampling unit (Advantec, Dublin, Calif.). TLC analyses
were performed under the following conditions: PAH,
1-hydroxyphenanthrene, 9,10-phenanthrenequinone, and 9,10-anthraquinone
were separated on high-performance TLC Silica Gel G 60F254
(Merck) with toluene; and catechol, 1-naphthol, and hydroxynaphthoic
acids were analyzed on high-performance TLC RP 18F254
(Merck) with methanol-water (70:30 or 50:50, vol/vol).
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RESULTS |
Since preliminary soil experiments showed that CO2 was
formed much more slowly than PAH were depleted, we performed mass
balance experiments in soil bioreactors to examine microbial
degradation of [9-14C]anthracene in soil-compost
mixtures. The compound was degraded by the microflora and
14CO2 was formed after a lag phase of 35 days.
The amount of extractable radioactivity in the soil was 3.9% of the
amount applied, whereas 67.2% of the radioactivity was liberated as
14CO2 after 176 days. CO2 formation
was stable after 128 days (Fig. 1 and
Table 1). The amount of residual
radioactivity in the soil, which was not extractable after the
extraction procedures and alkaline hydrolysis were performed, was
20.7% of the amount applied. No metabolism or increased formation of
bound residues was observed in similar experiments performed with
sterilized soil (31), and almost all of the activity
extracted was represented by anthracene.

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FIG. 1.
Carbon distribution during microbial degradation of
[9-14C]anthracene in a soil-compost mixture (dark lines)
and in native soil (light lines). Symbols: , total soil; ,
mineralization (CO2); , extractable radioactivity.
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TABLE 1.
Distribution of 14C after microbial
degradation of different labeled anthracenes and anthraquinone in
native soil and a soil-compost-mixture after 176 days
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The culture containing native soil and no compost degraded
[9-14C]anthracene much more slowly (Fig. 1).
Degradation started after a lag phase of 75 days with slow formation
of 14CO2. The amount of extractable
radioactivity decreased to a final concentration of 9.5% after 176 days (data not shown). Despite mineralization of 43.8% of the
anthracene, the nonextractable bound residues accounted for 45.4% of
the radioactivity, and the value was twice as high for the soil-compost
mixture (Table 1). The contribution of the parent
[14C]anthracene to the total activity in the extracts
(9.5%) was 2.9% of the amount applied, whereas the contribution was
<1% when compost was added. Most of the radioactivity in the extracts
could not be evaluated further. No specific metabolites were identified by TLC or by HPLC of the ethyl acetate extracts; the background levels
were high, which indicated that the 14C label was
distributed among a large number of compounds (data not shown).
In addition, we examined the metabolism and formation of bound residues
of anthracene with different labels in the soil-compost mixture.
Under similar culture conditions, the metabolism of
[9-14C]anthracene (Fig. 1) was significantly slower than
the metabolism of [1,2,3,4,4a,5a-14C]anthracene (Fig.
2). The formation of CO2 from
[1,2,3,4,4a,5a-14C]anthracene began after a lag
phase of 15 days, compared to a lag phase of 35 days in the case of
[9-14C]anthracene. The mineralization phase
occurred at the same time in both experiments (90 to 100 days).
However, the levels of extractable activity in the experiment performed
with [1,2,3,4,4a,5a-[14C]anthracene decreased rapidly
within 40 days, whereas more than 100 days were needed to reach similar
concentrations in the extracts in the [9-14C]anthracene
experiment. The total level of mineralization of [9-14C]anthracene (67.2%) was slightly higher than the
total level of mineralization of
[1,2,3,4,4a,5a-14C]anthracene (62.4%), whereas the
nonextractable bound residues accounted for 20.7% of the
[9-14C]anthracene and 28.5% of the
[1,2,3,4,4a,5a-14C]anthracene (Table 1). This indicates
that the transformation and carbon partitioning of the A-ring label
were significantly different from the transformation and carbon
partitioning at the C-9 position. A higher level of residues was
observed with elevated metabolism of
[1,2,3,4,4a,5a-14C]anthracene in the soil-compost
mixture.

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FIG. 2.
Carbon distribution during microbial degradation of
[1,2,3,4,4a,10a-14C]anthracene in a soil-compost mixture.
Symbols: , total soil; , mineralization (CO2); ,
extractable radioactivity.
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No microorganisms able to grow on anthracene were detected in native
soil or compost by plate count methods (29). To examine which groups of microorganisms actually metabolized the compounds and
formed residues in soil, the soil-compost mixture was incubated with
[1,2,3,4,4a,5a-14C]anthracene and bacteria or fungi were
selectively inhibited. Bacteria were inhibited by a mixture of
ampicillin, streptomycin, and tetracycline, and fungi were inhibited by
cycloheximide (Table 2). After inhibition
of fungi, slower metabolism and increased formation of bound residues
were observed compared to the uninhibited control. After inhibition of
bacteria, no metabolism occurred. This indicated that bacteria made the
major contribution to the metabolism of anthracene. Nearly all of the
extractable radioactivity in this experiment was represented by
anthracene. Thus, the observed formation of nonextractable residues in
the inhibited cultures had to be due to sorption of the parent
compound, which was the dominant mechanism of residue formation.
Sorption of the parent compound was also observed in the first 15 to 30 days in other soil cultures when there was no inhibition.
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TABLE 2.
Distribution of 14C after microbial
degradation of anthracene in a soil-compost mixture (after 174 days) in
the presence of antibiotics and after incubation under a
14CO2 atmosphere (after 90 days)
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In addition, degradation of 9,10-anthraquinone in the soil-compost
mixture was examined since this compound is the initial oxidation
product formed from anthracene during nonspecific oxidation with
exoenzymes of ligninolytic fungi (11). If metabolism of anthracene and residue formation in soil occur via transformation to
anthraquinone, similar amounts of residues should be obtained with the
two compounds. However, the amount residues formed from [9-14C]anthraquinone (10.1%) was much smaller than the
amount of residues formed from [9-14C]anthracene (20.7%)
or from [1,2,3,4,4a,5a-14C]anthracene (28.5%) (Table 1).
14CO2 was formed from anthraquinone at higher
rates than it was formed from anthracene, and the level of
mineralization with anthraquinone was 80.2%, compared to 67.2% with
[9-14C]anthracene. This indicated that extracellular
enzymes of ligninolytic litter-decaying fungi did not significantly
contribute to anthracene metabolism in the soil.
To investigate the incorporation of 14CO2
derived from mineralization of labeled anthracene as a possible
mechanism of residue formation, the soil-compost mixture was incubated
with 14CO2 in the absence of light. The total
CO2 concentration used (5.6 mmol/kg) was equivalent to
~70% of the mineralized anthracene used in our other degradation
experiments. After 90 days of incubation, most of the
14CO2 applied (95.2%) was found in the matrix
of the soil-compost mixture, and the nonextractable activity accounted
for 85.8% of the activity (Table 2). The absolute amount of residue
activity (21.3 Bq/g) was similar to the amount of residue activity that was observed during biodegradation of anthracene (25.2 Bq/g) (Table 1).
Inhibition of microbial activity by fumigation with CHCl3 (which resulted in respiration that was less than 0.5% of the native
soil respiration) decreased the level of immobilization to 40% of the
applied 14CO2, which indicated that there was a
microbial contribution to the CO2 fixation in the soil.
Only some of the CO2 fixation (31%) in the native soil
mixture was due to the formation of carbonates, whereas 67% of the
CO2 was incorporated into the organic matrix. A minor
amount (<2%) was fixed in the clay or silicates (see Materials and
Methods). However, the total amount of 14CO2
fixed represented only 4.8 mmol of C (~0.17%) for a soil carbon matrix containing about 2,830 mmol of C per kg. Although the mechanism of nonphotosynthetic CO2 fixation is not understood yet,
the results show that CO2 may have contributed
significantly to the formation of residues in the soil experiments
described here.
The nonextractable residues were examined to determine their
partitioning in different fractions of the organic soil matrix. The
radioactivities of the different soil fractions were normalized to the
total residual activity of the soil (100%), and the relative contribution of each fraction was determined (Table
3). Degradation of
[9-14C]anthracene in native soil led to speciation of the
bound activity into fulvic acids (28%), humic acids (33%), and
nonsoluble humines (23%). In the soil-compost mixture the major
activity was found in humines (29%) and humic acids (38%), and minor
activity was found in fulvic acids (18%). The higher level of
mineralization in the soil-compost mixture may indicate that increased
metabolism led to increased humification of the residual
14C. Compared to the degradation of
[9-14C]anthracene, the experiment performed with
14CO2 revealed some striking similarities in
the distribution of radioactivity in the different soil fractions. Only
slightly greater partitioning to humic acids and humates was observed.
This may be an additional indication that fixation of
14CO2 may play a significant role in the
formation of residues. Much greater extractability of the radiolabel
was observed only with inactivated soil material, and this soil
material exhibited a distribution pattern different from the
distribution patterns of the other soil cultures.
At higher pH values, phenolic compounds tend to polymerize to form
macromolecules with humic substance-like characteristics by
autoxidation processes (3, 50). The question is whether oxidized PAH metabolites take part in these reactions under neutral conditions in soil. We incubated the PAH metabolites catechol, 1-hydroxy-2- and 2-hydroxy-3-naphthoic acids, 9-hydroxyphenanthrene, 1-naphthol, 9,10-anthraquinone, and 9,10-phenanthrene-quinone in
phosphate buffer (pH 7). After we added catalytic amounts of bivalent
cations like Fe, Mn, and Zn, which are usually present in soils
(5, 48, 58), brown precipitates were formed in the reaction
mixture within 1 to 2 days. The molecular weights of the macromolecular
products were estimated by separating the products with ultrafiltration
membranes. Increasing brown color was observed in the fractions with
increasing molecular weights greater than 1,000. The main parts of the
products were found in the >10,000-dalton fraction. The dark color was
caused by the formation of macromolecular substances which were soluble
in alkali and precipitated at pH 1. As the molecular sizes increased,
the absorption spectra of the various fractions lost their UV
absorption maxima at 200 to 300 nm, which are characteristic of
aromatic monomers (Fig. 3). The
high-molecular-weight fraction produced nondifferentiated spectra which
are typical of humic acids (58). The results implied that
macromolecules built of PAH metabolites had characteristics of humic
acids.

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FIG. 3.
Spectra of humic acid and fractions of macromolecules
built of microbial PAH metabolites by chemical oxidation in the
presence of bivalent metal cations. MW, molecular weight.
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After 26 days of reaction less than 0.5% of the applied
1-hydroxy-2-naphthoic acid and less than 0.1% of the
2-hydroxy-3-naphthoic acid were extracted from the macromolecular
compounds. Catechol could not be determined, whereas anthraquinone and
phenanthrene-quinone were extracted nearly completely. It is assumed
that quinoid compounds play an important role in radical reactions
during the formation of humic substances (50). However,
these compounds were obviously not included in the reactions. In the
absence of catechol, only naphthoic acids polymerized under the
conditions used. In all cases, the reaction occurred only in the
presence of bivalent metal cations. To investigate the contribution of
macromolecules formed by complexation with Fe or Mn cations, we
examined disintegration after addition of a strong complexing agent.
However, no alteration of the macromolecules was observed after EDTA
was added. Gel chromatographic analyses of the macromolecules
revealed molecular weights of 2,000, which were only slightly less than
the molecular weights of commercially available humic acids
(2,200; Sigma-Aldrich). When the macromolecules were preextracted with
organic solvents, less than 0.9% of the educts were recovered by
hydrolysis or pyrolysis. Moreover, traces of phenanthrene and
naphthalene (about 1 mg/g) were present after pyrolysis.
13C nuclear magnetic resonance analyses revealed, in
addition to the aromatic signals (116, 124, and 126 ppm),
characteristic signals in the carboxylic range (140 to 160 ppm), which
corresponded to 15% of the carbon of the macromolecules. This value
was significantly higher than value obtained for the
parent mixture of monomers (data not shown). Polymerization of
the PAH metabolites was also initiated by laccases and peroxidases in
filtrates of cultures of the white rot fungi Pleurotus
ostreatus Z15 and Trametes villosa 165. However, the
yields of these reactions were significantly smaller due to oxidation
of the substrates. The results indicate that PAH metabolites like
hydroxynaphthoic acids and hydroxylated compounds may take part in
biotic and abiotic formation of humic macromolecules in soil to a
significant extent.
 |
DISCUSSION |
In this work we determined mass balances for 14C
partitioning in soil after complete microbial degradation of
anthracene, and we obtained information about the relevant
processes of formation of bound residues during biodegradation of
this PAH. Only a few complete mass balances for
[14C]PAH biodegradation and residue formation in soil
have been described previously (Table 4).
The levels of anthracene mineralization were significantly lower in
previous studies than in this study. In the present study, the high
levels of mineralization were caused by the addition of compost and by
its specific microflora, as discussed previously (29). The
parent compound anthracene was completely transformed, and the
radioactivity in the extracts was distributed nonspecifically to
various unidentified substances. In most other studies, especially
studies performed with contaminated soils, significant amounts of the
parent compounds were extractable from the soil at the end of the
experiments (6, 13, 14, 28, 35, 39, 57). After microbial
degradation of 14C-labeled PAH, significant portions of the
label could not be extracted from native or contaminated soils and
could not be mobilized even by rigid extraction methods. The amounts of
the residues were usually overestimated, since sequential extraction
methods were used only in some cases (10, 30, 31, 40). Most
of the data that have been published are data for anthracene, and the effects of different conditions on carbon partitioning during microbial degradation can be demonstrated for this compound (Table 4). In the case of
[9-14C]anthracene dissolved in diesel fuel added to
the soil, only a small amount of residue was formed, and no degradation
was observed in native or sterilized soil. After compost was added to
this soil, a large portion of the anthracene was mineralized, and 42% of the applied radioactivity was found in the residues (30, 31). The same soil-compost mixture contained only 21% residues after anthracene was added without diesel fuel, indicating that oil
matrices may increase residue formation in contaminated soils.

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FIG. 4.
Products of microbial degradation of anthracene and
estimated contribution of these products (thick lines) to the formation
of nonextractable residues in the organic soil matrix.
|
|
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|
TABLE 4.
Mineralization and formation of nonextractable residues
during microbial degradation of 14C-labeled PAH in soils
and sediment microcosms
|
|
The amount of organic carbon in soil containing compost is much larger
than the amount of organic carbon in native soil. Thus, it can be
assumed that the organic matrix may act as an additional binding
substrate, as expected based on PAH sorption to humic substances in
aqueous phases. However, we demonstrated that the bound residues formed
after supplementation of the soil with compost resulted in
significantly less formation of bound residues from [9-14C]anthracene and increased mineralization.
Obviously, organic substrates like compost, which was degraded to a
significant extent during incubation with soil (31), have
only a small effect on residue formation and may decrease sequestration
of the parent compounds in soil particles. Thus, the metabolic
potential of the microflora is an important factor controlling the
formation of bound residues during microbial degradation.
Anthraquinone is the primary oxidation product obtained from anthracene
during nonspecific oxidation with exoenzymes of ligninolytic fungi
(11). Analyses of microbial degradation of anthraquinone showed that extracellular enzymes of ligninolytic and litter-decaying fungi were not involved in anthracene transformation. Fungi play a
minor role during mineralization of anthracene in soil, since selective
inhibition of fungi resulted in decreased mineralization and increased
formation of residues. The major activity is the bacterial activity. No
metabolism was observed after inhibition of bacteria, and nearly all of
the radioactivity in the extracts was in the parent anthracene.
Therefore, sorption of the parent compound had to be the main mechanism
of residue formation in this culture. Both cultures containing
antibiotics formed more nonextractable residues than the active
microflora formed. This indicates that greater residue formation by
sorption occurred when metabolism was inhibited. Nonmetabolized PAH may
be incorporated into the soil matrix by diffusion and sorption into
particles (20, 27, 32) or into a xenobiotic matrix like coal
particles (57). However, these mechanisms of residue
formation primarily reduce the bioavailability of the compounds, and
the major amount remains extractable. In general, the possible
mechanisms of residue formation from [14C]PAH depend on
the compounds (parent PAH, metabolites, biomass, or CO2)
and on the binding matrix (organic matrix, inorganic soil matrix, or
xenobiotic matrix). The following three mechanisms for binding of PAH
or metabolites are possible: sorption, physical entrapment, and
covalent bonds. Sorption is considered a reversible process that is
driven by weak interactions (46) and leads to relatively
labile associations of xenobiotics compounds and the organic matrix
(18). However, the forces may be additive and may cause the
adsorption-desorption hysteresis of PAH which is sometimes observed
(27). Physical entrapment may occur if cavities of
macromolecules are closed by altering the macromolecules. Covalent bonds, like ester-, ether-, C-C-, or C-N- bonds, are much more stable
and are linked by chemical reactions. Covalent bonds require specific
reactivity of the compounds involved or activation by enzymes or by
chemical oxidation reactions and result in the loss of the chemical
identities of bound molecules.
Most of the nonextractable bound residues which are formed during
microbial degradation of PAH result from incorporation of PAH
metabolites. When the parent compounds are sequestered, similar residue
formation with the different labeled anthracenes should be expected.
However, elevated mineralization rates were observed with
[1,2,3,4,4a,5a-14C]anthracene instead of
[9-14C]anthracene, and larger amounts were incorporated
into the residues under similar conditions. This can only be explained
by metabolism, since the availabilities of different C positions in the
anthracene molecule are not the same for the anabolic and catabolic
processes of soil microorganisms. Another indication that residues are
formed from metabolites is the fact that large portions of the
radioactivity were extractable before relevant amounts of PAH were
degraded. Therefore, formation of microbial metabolites resulting in
reactive functional groups in the PAH molecules seems to be essential
for decreasing extractability. Oxidation of PAH results in phenolic compounds or aryl radicals, which have high potential for coupling to
the organic soil matrix (3). The extent of bound residue formation depends, therefore, on the metabolic potential of the soil
microflora and the characteristics of the soil. The position of the
14C label is another important factor which controls the
formation of residues from metabolized compounds. The time courses of
bound residue formation in the experiments were based on two main
processes. Immediately after the PAH were added, diffusion and
sequestration of the parent compounds into soil pores occurred
(20, 32). After this microbial degradation of the compounds
was accompanied by incorporation of metabolites into the organic soil matrix.
Only limited data concerning the molecular structures of bound residues
obtained from PAH are available. In our previous soil studies performed
under similar conditions, 0.3% of the PAH applied was extractable
after 200 days. Hydrolysis of the soil organic matter released 1.3% of
the sorbed or entrapped parent compounds, which were mainly associated
with fulvic and humic acids (40). Microbial PAH metabolites
like hydroxynaphthoic acids, 9-fluorenone-1-carboxylic acid,
4-phenanthroic acid, and (in other experiments)
o-phthalic acid were recovered only after hydrolysis of the
soil material. However, the amount obtained represented only 0.5% of
the PAH applied. Portions of the metabolites were proven to be
covalently bound by ester bonds (40). Only traces of
sequestered parent PAH compounds were found in the extracted soil, as
determined by pyrolysis gas chromatography-mass spectrometry
(41). Overall, only a small amount of the bound residues
observed in the experiments could be traced back to PAH or to known
metabolites. Thus, the structures of most of the residues were unknown.
The high level of stability of the residues suggests that the
metabolites were coupled to the organic matrix by ether-, C-C-, or
multivalent bonds. This suggestion supports the hypothesis that
covalently bound metabolites become integral parts of humic matter,
which cannot be further identified (3, 12). Hydroxynaphthoic
acids and several hydroxylated PAH metabolites are able to undergo
oxidative coupling reactions with compounds in natural organic matter
or with themselves and form macromolecules with physical
characteristics of humic acids (such as alkaline solubility,
precipitation by acids, molecular weights, and nonspecific absorption
spectra). These processes may contribute substantially to the formation of bound residues. The formation of macromolecules was initiated by
bivalent metal cations which are common in soils (5, 48, 58). Radical-forming extracellular enzymes of ligninolytic fungi are also thought to be involved in generating such macromolecular networks (2, 4, 5, 47). The high levels of stability of
these macromolecules also suggest that the metabolites are linked by
ether-, C-C-, or multivalent bonds. Some of the nonextractable residues
present after mineralizing degradation of anthracene may also be
explained by 14CO2 fixation, which accounted
for ~0.2% of the soil carbon content. A minor portion of the residue
formed from 14CO2 resulted from fixation of
carbonates, but the major portion was due to carbon incorporation into
the organic soil matrix, which depended on the activity of the soil
microflora. Another indication that CO2 fixation is
relevant is based on the partitioning of the radiolabel in humines and
humic and fulvic acids, which was similar to partitioning in the
residues derived from anthracene. The processes that cause
CO2 fixation are still not known. However, our results
provide clear evidence that the extent of residue formation by certain
PAH metabolites in the humic matrix is smaller than usually presumed.
Based on the data presented above, we suggest a scheme for residue
formation during biodegradation in soil (Fig. 4). Although no detailed mass balances
showing the carbon flow via PAH metabolites or CO2 fixation
in the residue fraction are available, we concluded from the amounts
transformed that both processes significantly contribute to residue
formation. Residue formation by sequestering of the parent compound or
by fixation of metabolites that can be remobilized by hydrolysis does
not play a major role. In addition, residue formation by intermediate incorporation into biomass and subsequent humification of cell compounds is a general mechanism if the carbon is assimilated during
biodegradation. However, no radiolabel was observed in the biomass
after degradation of [9-14C]anthracene in previous soil
experiments (30). This observation may be explained by the
results of experiments performed with pure cultures of
Sphingomonas paucimobilis. Position 9 of
13C-labeled anthracene was not transferred into the
biomass, although the organism was able to grow on anthracene as a sole
source of carbon and energy (unpublished data). Thus, the larger amount of bound residues in the case of
[1,2,3,4,4a,5a-14C]anthracene may account for the
transformation of the A-ring carbon into residues via biomass. Bound
residues derived from highly metabolized PAH do not represent bound
residues and should be considered biogenic residues in the sense of
humification. Biogenic residues are commonly found in natural soil
environments after microbial degradation of natural substances. A total
of 30 to 40% of the 14C from 14C-labeled plant
material remained in the soil after incubation for 1 year, and this
14C contributed to the formation of humic substances
(1, 16, 51).
Without any evidence of carbon transformation from xenobiotic compounds
to natural compounds, the differentiation between bound residues and
biogenic residues or humification products is only a theoretical
concept. However, it can be generally assumed that bound residues are
less toxic, less bioavailable, and less mobile than the free parent
compounds (3, 4, 56). Some authors have proposed that
enhanced formation of nonextractable residues from xenobiotic compounds
should be used as a technique to decrease the toxic potential and
bioavailability at contaminated sites (2, 3, 55). However,
for critical assessment of such techniques further investigations of
residue remobilization under environmental worst-case conditions, of
long-term stability, and of structural assignments are necessary.
 |
ACKNOWLEDGMENTS |
We thank R. Stegmann for providing the soil bioreactors and K. Spaude for excellent technical assistance.
Parts of this work were supported by grant 1480909 from the German
Ministry of Education and Research (BMBF) and by grants from the
Deutsche Forschungsgemeinschaft (DFG) within the interdisciplinary research project "Remediation of contaminated soil" (grant SFB 188, project D6).
 |
FOOTNOTES |
*
Corresponding author. Present address: UFZ Center for
Environmental Research Halle-Leipzig, Permoserstr. 15, 04318 Leipzig, Germany. Phone: (49) 341-235 2351. Fax: (49) 341-235 2492. E-mail: kaestner{at}san.ufz.de.
 |
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Applied and Environmental Microbiology, May 1999, p. 1834-1842, Vol. 65, No. 5
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Copyright © 1999, American Society for Microbiology. All rights reserved.
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