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Applied and Environmental Microbiology, May 1999, p. 1941-1948, Vol. 65, No. 5
0099-2240/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Interactions between Carbon and Nitrogen Metabolism
in Fibrobacter succinogenes S85: a 1H and
13C Nuclear Magnetic Resonance and Enzymatic
Study
Christelle
Matheron,1
Anne-Marie
Delort,1
Genevieve
Gaudet,2,3,*
Tibor
Liptaj,1,
and
Evelyne
Forano2
Laboratoire de Synthèse,
Electrosynthèse et Etude de Systèmes à Interêt
Biologique, UMR 6504-CNRS,1 and Centre
Universitaire des Sciences et Techniques,3
Université Blaise Pascal, 63177 Aubière, and
Laboratoire de Microbiologie, INRA, Centre de Recherches de
Clermont-Ferrand-Theix, 63122 Saint-Genès-Champanelle,2 France
Received 20 October 1998/Accepted 18 February 1999
 |
ABSTRACT |
The effect of the presence of ammonia on
[1-13C]glucose metabolism in the rumen fibrolytic
bacterium Fibrobacter succinogenes S85 was studied by
13C and 1H nuclear magnetic resonance (NMR).
Ammonia halved the level of glycogen storage and increased the rate of
glucose conversion into acetate and succinate 2.2-fold and 1.4-fold,
respectively, reducing the succinate-to-acetate ratio. The
13C enrichment of succinate and acetate was precisely
quantified by 13C-filtered spin-echo difference
1H-NMR spectroscopy. The presence of ammonia did not modify
the 13C enrichment of succinate C-2 (without ammonia,
20.8%, and with ammonia, 21.6%), indicating that the isotopic
dilution of metabolites due to utilization of endogenous glycogen was
not affected. In contrast, the presence of ammonia markedly decreased
the 13C enrichment of acetate C-2 (from 40 to 31%),
reflecting enhanced reversal of the succinate synthesis pathway. The
reversal of glycolysis was unaffected by the presence of ammonia as
shown by 13C-NMR analysis. Study of cell extracts showed
that the main pathways of ammonia assimilation in F. succinogenes were glutamate dehydrogenase and alanine
dehydrogenase. Glutamine synthetase activity was not detected.
Glutamate dehydrogenase was active with both NAD and NADP as cofactors
and was not repressed under ammonia limitation in the culture.
Glutamate-pyruvate and glutamate-oxaloacetate transaminase activities
were evidenced by spectrophotometry and 1H NMR. When cells
were incubated in vivo with [1-13C]glucose, only
13C-labeled aspartate, glutamate, alanine, and valine were
detected. Their labelings were consistent with the proposed amino acid
synthesis pathway and with the reversal of the succinate synthesis pathway.
 |
INTRODUCTION |
Fibrobacter succinogenes
is a major rumen fibrolytic bacterium. It uses cellulose, glucose, and
cellobiose as carbon and energy sources and ammonia as its sole
nitrogen source (21). Ammonia is the prime source for
protein synthesis in the rumen, accounting for the synthesis of 50 to
70% of bacterial nitrogen (13). Most of the studies of
ammonia assimilation in the rumen have dealt with total ruminal
content, and only a few papers have given detailed information on
individual species (18, 23). In particular, the pathways of
ammonia assimilation and amino acid synthesis in F. succinogenes are still unknown, although its carbon metabolism has
been extensively studied (14, 15, 17). Glucose is
metabolized through glycolysis into succinate, acetate, and a little
formate. A part of the carbohydrates metabolized is stored as glycogen. Analysis by 13C and 1H nuclear magnetic
resonance (NMR) was previously used to monitor in vivo the storage and
degradation of glycogen in resting cells of different strains of
F. succinogenes (8, 16), and a futile cycling of
glycogen was shown: glycogen was simultaneously stored and degraded
when bacteria were supplied with an exogenous carbon source.
Furthermore, F. succinogenes was shown to accumulate
glycogen throughout the exponential growth phase even when ammonia was not limiting (8, 16), whereas bacteria usually accumulate glycogen when ammonia (or another factor) limits growth
(19). In addition to the futile glycogen cycle, a reversal
of glycolysis and of the succinate synthesis pathway was found in
F. succinogenes (16). These unusual features
prompted us to investigate the relationship between ammonia
assimilation and glycogen storage and also the effect of the presence
of ammonia on the futile cycles. The enzymes responsible for ammonia
assimilation and amino acid synthesis from intermediates of glucose
metabolism were also sought.
The main pathways of ammonia assimilation were glutamate dehydrogenase
(GLDH) and alanine dehydrogenase (ADH). The results obtained by
13C-NMR and 13C-filtered spin-echo difference
(13C-FSED) 1H-NMR spectroscopy suggest a
modulation of carbon metabolism by ammonia in F. succinogenes S85.
 |
MATERIALS AND METHODS |
Culture conditions.
F. succinogenes S85 (ATCC 19169)
was grown for 15 h on a chemically defined medium (8)
with 3 g of cellobiose per liter.
Preparation and incubation of cells.
For in vivo NMR
experiments, cells were prepared as described by Matheron et al.
(16). The cells harvested in the late log phase were spun
(6,000 × g, 10 min, 4°C) and resuspended in a reduced 50 mM potassium phosphate-0.4%
Na2CO3-0.05% cysteine buffer (pH 7.1). The
cells at a final concentration of 5 mg of protein · ml
1 were incubated with 32 mM
[1-13C]glucose, with or without 13 mM
(NH4)2SO4, depending on the
experiment. The cells were incubated at 37°C either in the
spectrometer (in vivo NMR) or in a water bath and then sampled.
Each experiment was carried out at least three times with three
different cultures.
Preparation of cell extracts.
For 13C-FSED
1H-NMR and 13C-NMR experiments, samples taken
at the end of the incubation were frozen in liquid nitrogen and thawed three times. After being spun (15,000 × g, 10 min,
4°C) to remove the cell debris, the supernatants were analyzed by NMR.
For determination of enzyme activities (spectrophotometry or
1H NMR), cells in late log phase were collected by spinning
(4,500 × g, 12 min, 4°C) and washed anaerobically in
a sterile reduced buffer (50 mM potassium phosphate, 0.4%
Na2CO3, 0.05% cysteine-HCl, 5 mM
MgCl2 [pH 7.1]). The cells were disrupted anaerobically
by sonication with a Branson Sonifier cell disrupter, model B15 (three treatments of 10 s each, 30 s apart), in an ice bath. After
being spun (82,000 × g, 30 min, 5°C) in
CO2-filled centrifuge tubes, supernatants were immediately
used as cell extracts.
NMR spectroscopy.
NMR spectra were recorded on a Bruker MSL
300 spectrometer operating at 300.13 MHz for 1H NMR and
75.4 MHz for 13C NMR. The 2H resonance of
D2O (10%) was used to lock the field and for shimming.
In vivo
13C-NMR experiments were performed at 37°C as
previously described, with a 10-mm-diameter probe (
14). In
vitro
13C-NMR experiments were performed with a
5-mm-diameter probe (60°
pulse, 2-s relaxation delay, 8 kilobytes of
data, 1,000 scans).
The low-power Waltz-16 proton-decoupling program
was used to avoid
sample heating. A pure benzene capillary, centered in
the NMR
tube, was used as an external reference resonating at 128.5 ppm
from tetramethylsilane and to normalize the integrals of
13C-NMR
spectra.
1H-NMR spectra, unless otherwise stated, were acquired with
a
13C-FSED pulse sequence and a 5-mm-diameter inverse probe
(
1H-
13C-
15N) (
16) by the
following formula: preparation

(90°)
H

/2

(180°)
H/(

)
X

/2

(90°)
X 
FID(
1H), where the subscripts
denote the nucleus experiencing the pulse
(
H, proton;
X,
13C),

is the evolution interval,

is
pulse angle, and FID is
free induction decay. The last carbon pulse is
a purging pulse.
Spectra with an

of 0 or 180° were acquired in
subsequent scans
and were stored independently in two blocks of memory.
Extensive
phase cycling was used to compensate for quadrature detection
artifacts (CYCLOPS) and 180° pulse imperfections (EXORCYCLE).
In a
preparation period the solvent resonance was saturated by
the DANTE
pulse train [(

/2

)B
1 = 5,500 Hz; pulse duration, 15
µs; pulse repetition, 250 µs] for a period of 2 s.

was
adjusted
according to the one-bond C,H constant for succinate and
acetate
[

= 1/
1J(C,H) = 7.2 ms]. After 8 dummy scans, 256 scans were accumulated
in 8 kilobytes of memory. The
acquisition time was 1.024 s, the
spectral width was 4,000 Hz, and the
scan repetition time was
3.03
s.
The determination of percentages of
13C enrichment of
succinate and acetate is fully described in the work of Matheron et al.
(
16).
Enzyme activities.
The experimental conditions for the
enzymatic assays are reported in Table 1.
The assays for GLDH (reaction I), glutamine synthetase (GS) (reaction
II), glutamate-pyruvate transaminase (reaction V), and
glutamate-oxaloacetate (OAA) transaminase (reaction VI) activities were
adapted from the work of Erfle et al. (7), except that the
products of reactions II, V, and VI were detected by 1H
NMR. Activity of ADH was assayed in a system similar to that in
reaction I except that pyruvate was used in place of
-ketoglutarate.
Metabolite assays.
Protein concentration was determined by
the Bradford method (3), with bovine serum albumin as the standard.
Succinate, acetate, and glucose were assayed with a Boehringer
kit.
Ammonia was assayed by the phenol-hypochlorite reaction described by
Weatherburn (
24).
Glycogen was quantified by a glucose assay after hydrolysis with
amyloglucosidase as previously described (
16).
Chemicals.
[1-13C]glucose (99% labeled) was
purchased from Eurisotop (Saint Aubin, France). All enzymes and
chemicals were purchased from Sigma or Boehringer.
 |
RESULTS |
Effect of ammonia on glucose metabolism in F. succinogenes S85 cells.
Resting cells of F. succinogenes S85 (5 mg of protein · ml
1) were
incubated with 32 mM [1-13C]glucose at 37°C in the
absence of ammonia or in the presence of 26 mM ammonia. Kinetics of
[1-13C]glucose utilization were monitored in vivo by
13C-NMR spectroscopy. Figure
1A presents a spectrum recorded after 27 min of incubation in the presence of ammonia. As in the absence of
ammonia, disappearance of the two glucose anomer signals,
-[1-13C]glucose (96.4 ppm) and
-[1-13C]glucose (92.6 ppm), was associated with
detection of signals of [2-13C]succinate (34.5 ppm),
[2-13C]acetate (23.7 ppm), [6-13C]glycogen
(61.0 ppm), and [1-13C]glycogen (100.1 ppm); the labeling
at the C-6 position of glycogen results from glycolysis reversal after
isomerization at the triose-phosphate level (8, 16). The
ratio of the integrals of [1-13C] and
[6-13C]glycogen (about 3) was not significantly
affected by the presence of ammonia, indicating that ammonia did not
modulate this reversal.

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FIG. 1.
Proton-decoupled 13C-NMR spectra of 32 mM
[1-13C]glucose utilization by resting cells of F. succinogenes (5 mg of protein · ml 1)
incubated in the presence of 26 mM ammonia. (A) In vivo
13C-NMR spectrum registered after 27 min of incubation. (B)
13C-NMR spectrum of extracts of cells incubated for 35 min.
Peaks: 1, [1-13C]glycogen; 2, -[1-13C]glucose; 3, -[1-13C]glucose;
4, [6-13C]glycogen; 5, [2-13C]aspartate; 6, [3-13C]aspartate; 7, [2-13C]succinate; 8, [2-13C]acetate; 9, [4-13C]valine; 10, [3-13C]alanine; 11, [2-13C]glutamate; 12, [2-13C]alanine, 13, [3-13C]glutamate.
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Additional signals were observed both in the in vivo spectrum (Fig.
1A)
and in the
13C-NMR spectrum (Fig.
1B) of extracts; they
will be discussed
later.
The time course of [1-
13C]glucose utilization and
metabolite production is presented in Fig.
2. In the presence of ammonia,
glucose
consumption was slowed by 34% (Fig.
2A) and
[1-
13C]glycogen storage decreased by 50% (Fig.
2B), with
storage stopping
after 15 min. The same was observed for
[6-
13C]glycogen (not shown). The rate of production
of [2-
13C]succinate was unchanged (Fig.
2C), while that
of [2-
13C]acetate was increased by 30% (Fig.
2D).

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FIG. 2.
Time-dependent changes in signal integrals of
-[1-13C]glucose and -[1-13C]glucose
(A), [1-13C]glycogen (B), [2-13C]succinate
(C), and [2-13C]acetate (D) during utilization of 32 mM
[1-13C]glucose in the presence ( ) or in the absence
( ) of 26 mM ammonia, measured from in vivo 13C-NMR
spectra.
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|
In parallel, glucose and ammonia utilization, succinate and acetate
production, and glycogen content were enzymatically or
chemically
assayed in supernatants or frozen and thawed extracts
of cells
incubated under similar conditions in a water bath at
37°C (Table
2). Glucose consumption calculated after
10 min of
incubation (0.30 µmol · mg of
protein
1 · min
1) was reduced by 33%
(0.20 µmol · mg of protein
1 · min
1) in the presence of 26 mM ammonia. The ammonia
consumption was
60 nmol · mg of protein
1 · min
1. The presence of ammonia had no effect on the
kinetics of succinate
synthesis, while the synthesis of acetate was
increased 1.5-fold.
The accumulation of glycogen was decreased twofold
during the
first 10 min and threefold by the end of the incubation.
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TABLE 2.
Concentration of metabolites produced or substrates
consumed by cells of F. succinogenes in the presence or
absence of ammonia
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The results were analyzed in terms of the yields of metabolites
relative to glucose consumption (Fig.
3).
The addition of
ammonia increased the rates of glucose conversion into
succinate
and acetate 1.4-fold and 2.2-fold, respectively (Fig.
3A and
B),
decreasing the ratio of succinate to acetate from 3.5 to 2.1.
Storage of glycogen was halved (Fig.
3C). For example, the utilization
of 20 mM glucose led to the synthesis of 8.3 mM succinate, 2.6
mM
acetate, and 4.0 mM glycogen (glucose equivalent) in the absence
of
ammonia versus, respectively, 11.9, 5.5, and 1.95 mM in the
presence of
ammonia. Thus, the addition of ammonia modifies the
relative
proportions of the metabolites.

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FIG. 3.
Production of succinate (A), acetate (B), and glycogen
(C) relative to glucose consumption by resting cells incubated in the
presence ( ) or in the absence ( ) of 26 mM ammonia. Metabolite
concentrations were measured by enzymatic assays. Glycogen
concentrations are given as glucose equivalents.
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To determine whether the presence of ammonia influenced the futile
glycogen cycling or the reversal of the succinate synthesis
pathway
previously observed (
16), the succinate and acetate
13C enrichments were quantified at the end of the
incubations by
1H NMR. We used a
13C-FSED pulse
sequence previously developed by us (
16) to improve
the
precision of the quantification (less than 1% error). The
percentage
of enrichment of succinate C-2 was not significantly
changed by the
presence of 26 mM ammonia (without ammonia, 20.8%,
and with ammonia,
21.6% [Table
3]). This is consistent
with the
equivalent amounts of total succinate measured with and
without
ammonia (Table
2) and of [2-
13C]succinate
measured with and without ammonia (Fig.
2). We previously
showed that
the difference between the theoretical and the measured
percentages of
enrichment of succinate C-2 reflects the contribution
of intracellular
unlabeled glycogen to succinate production (
16).
With or
without ammonia, this difference was 3.6 or 4.2%, respectively
(Table
3), indicating that about 16% of the glucose entering
glycolysis comes
from prestored glycogen (see Fig. 6 in the work
of Matheron et al.
[
16]).
The percentage of enrichment of acetate was decreased from 40 to 31%
by the presence of ammonia (Table
3), while the total
amount of acetate
increased in the enzymatic assays (Table
2).
With acetate, both
intracellular unlabeled glycogen degradation
and the reversal of the
succinate synthesis pathway contribute
to the isotopic dilution of C-2
(
16). The contribution due to
the unlabeled glycogen can be
determined from dilution of the
enrichment of C-2 of succinate.
Unlabeled glycogen contributes
in the same proportion to succinate and
acetate synthesis, leading
to 8.4% of the 10% deficit of labeling of
acetate C-2 in the incubation
carried out in the absence of ammonia.
Thus, 1.6% of this deficit
is due to the reversal of the succinate
synthesis pathway. In
the presence of ammonia, unlabeled glycogen
contributes 7.2% to
the deficit of labeling and the reversal of the
succinate synthesis
pathway accounts for 11.8% of the deficit of
labeling (Table
3).
These results indicate that the presence of ammonia
increases
this reversal
sevenfold.
13C-NMR experiments were performed with extracts from cells
incubated with [1-
13C]glucose with or without ammonia
under conditions allowing detection
of carboxylates (not shown). The
signal of acetate C-1 (

= 181.8
ppm) was increased in the presence
of ammonia. This result is
consistent with the increase in the reversal
of the succinate
pathway. We previously explained that because of
scrambling at
the fumarate level, the reversal gives rise to both
[1-
13C]acetate and [2-
13C]acetate
(
16).
Ammonia assimilation and amino acid synthesis. (i) Enzyme
activities.
Enzymes involved in the synthesis of amino acids from
intermediates of carbon metabolism (
-ketoglutarate, pyruvate, OAA, and fumarate), either by direct amination from ammonia or by
transamination, were sought in F. succinogenes sonicated
extracts. Activities of dehydrogenases or transaminases were monitored
by either spectrophotometry or 1H NMR (Table
4).
The two main pathways of ammonia assimilation in bacteria are the
amination of

-ketoglutarate by GLDH (reaction I) and the
synthesis
of glutamine from glutamate by GS (reaction II). The
ammonia
concentration in the culture medium may affect the respective
contributions of the two enzymes to ammonia assimilation (
18,
23). We therefore assayed the activities of the two enzymes
in
F. succinogenes cells cultured with two different ammonia
concentrations:
0.5 and 13 mM. The specific activities of NAD-GLDH were
80 nmol
· mg of protein
1 · min
1 in extracts of cells grown with 13 mM ammonia and
120 nmol ·
mg of protein
1 · min
1 in extracts of cells grown with 0.5 mM ammonia
(Table
4). GLDH
activities were equivalent with NADH or NADPH as the
cofactor
in extracts of cells grown with 13 mM ammonia. Under this
condition,
the reverse reaction was 10 times less efficient and
occurred
only with NADP as the cofactor (Table
4). Our results extend
the previous conclusions of Joyner and Baldwin (
12), who
found
only an NADP-GLDH activity in extracts of
F. succinogenes S85.
The GS (reaction II) activities in extracts incubated with ammonia and
ATP or GTP were investigated by
1H NMR. No resonance
corresponding to the signals of glutamine
was detected on the spectrum
(not
shown).
Activity of ADH (reaction III) was detected in the presence of NADPH
(15 nmol · mg of protein
1 · min
1) (Table
4). The reverse reaction was not
found.
Aspartase (reaction IV) activity in extracts incubated with fumarate
and ammonia was investigated by
1H NMR. Under these
conditions, only malate, resulting from the
activity of fumarase, was
detected on the spectrum (not
shown).
Activities of the reverse reactions of glutamate-pyruvate transaminase
(reaction V) and glutamate-OAA transaminase (reaction
VI), measured by
spectrophotometry, were 17.3 and 36 nmol · mg
of
protein
1 · min
1, respectively (Table
4). Both direct and reverse reactions were
shown by
1H NMR
(Table
4).
The spectra of incubations performed to show transaminations V and VI
in the forward direction are presented in Fig.
4. On
the spectrum in Fig.
4A, obtained
at the end of an incubation
with pyruvate and glutamate (reaction V), a
singlet at 2.37 ppm,
a multiplet at 2.09 ppm, and a triplet at 2.34 ppm
were assigned
to the protons bound to pyruvate C-3 and glutamate C-3
and C-4.
Resonances centered at 1.46 ppm (doublet), 2.44 ppm (triplet),
and at 3.01 ppm (triplet) were assigned, respectively, to protons
borne
by alanine C-3 and

-ketoglutarate C-3 and C-4, the transamination
products. The doublet observed at 1.46 ppm is not symmetric, because
it
overlaps the singlet signal of a proton borne by C-3 of hydrated
pyruvate at 1.48 ppm. The resonances of protons borne by the glutamate
C-2 overlapped those of sugars (not shown).

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FIG. 4.
1H-NMR spectra of extracts incubated for 30 min with 20 mM glutamate and 20 mM pyruvate (A) or 20 mM oxaloacetate
(B). Peaks: 1, -ketoglutarate; 2, pyruvate; 2', hydrated form of
pyruvate; 3, glutamate; 4, alanine; 5, aspartate.
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At the end of the incubation (reaction VI) with OAA and glutamate
(spectrum in Fig.
4B), resonances were assigned to protons
borne by the
carbon atoms of pyruvate, glutamate, and

-ketoglutarate
and also by
aspartate C-3 (doublets centered at 2.79 and 2.68
ppm, corresponding to
the AB part of the ABX system). The resonances
corresponding to OAA
(initial substrate) were not observed on
the spectrum in Fig.
4B owing
to the very fast exchange between
a proton and deuterium from
D
2O (enol form of OAA). An unexpected
doublet centered at
1.46 ppm was assigned to the protons bound
to alanine C-3. This signal
was observed in a control experiment
in which extracts were incubated
only with aspartate (not shown).
Alanine may result from
decarboxylation of aspartate by an aspartate
decarboxylase. Finally,
the signal at 2.37 ppm, assigned to pyruvate,
can be explained by
transamination (reaction V) of the alanine
coming from decarboxylation
of aspartate and reacting with the

-ketoglutarate present in the
incubation
mixture.
(ii) In vivo observations.
In vivo 13C-NMR spectra
of cells incubated with [1-13C]glucose in the presence of
ammonia (Fig. 1A) showed signals that were identified as
[3-13C]aspartate (37.0 ppm),
[2-13C]aspartate (52.8 ppm), [3-13C]alanine
(17.0 ppm), and [4-13C]valine (17.2 and 18.5 ppm). These
resonances increased for the first 10 min and then remained at a
constant level. No other amino acids were detected on the in vivo
13C-NMR spectra, suggesting that their intracellular
concentrations were very low owing to their rapid incorporation into
proteins. Additional signals were detected on spectra of extracts of
the cells at the end of the incubation, recorded under conditions allowing higher sensitivity (Fig. 1B). They were assigned to
[2-13C] and [3-13C]glutamate (55.08 and
27.35 ppm, respectively) and to [2-13C]alanine (51.4 ppm).
Modifications of the ammonia concentration in the incubation mixture
and addition of essential volatile fatty acids (isobutyrate
and
valerate [
5]) did not promote amino acid accumulation
in
the cells. Preincubation of cells for 20 min in the presence of
tetracycline or chloramphenicol (1 mg/ml) did not change the observed
amino acid pattern. No modification was induced even when cells
were
incubated in culture medium instead of
buffer.
The labeling of C-3 of alanine and aspartate and of C-2 of glutamate
was as expected from the metabolism of [1-
13C]glucose via
reactions III and V, reaction VI, and reaction I,
respectively (Fig.
5). The labeling of C-4 of valine is
consistent
with the classical pathway of valine synthesis from two
[3-
13C]pyruvates as building blocks (
9) (Fig.
5). Labeling of C-4
of glutamate was expected, resulting from the
incorporation of
[2-
13C]acetyl coenzyme A and leading to
the formation of

-ketoglutarate.
The signal of the
[4-
13C]glutamate probably overlapped the signal of
[2-
13C]succinate.

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FIG. 5.
Pathway of formation of succinate, acetate, and amino
acids from [1-13C]glucose. EMP, Embden Meyerhof Parnas
pathway. Reaction I, GLDH; reaction III, ADH; reaction V,
glutamate-pyruvate transaminase; reaction VI, glutamate-OAA
transaminase. Symbols: ,
13C enrichment obtained via forward pathway; ,
13C enrichment obtained after reversion of the succinate
synthesis pathway.
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The unexpected labelings of C-3 of glutamate and of C-2 of aspartate
and alanine are explained by the reversal of the succinate
synthesis
pathway through scrambling at the fumarate level leading
to
[2-
13C] and [3-
13C]OAA and to
[2-
13C] and [3-
13C]pyruvate.
[2-
13C]OAA gives rise to [2-
13C]aspartate
(reaction VI). [2-
13C]alanine can result from either
[2-
13C]pyruvate (Fig.
5) or decarboxylation of
[2-
13C]aspartate (see above). The labeling of valine C-2
and C-3, also
expected from the reversal of the succinate pathway (Fig.
5),
was not detected on the
13C-NMR spectrum (Fig.
4).
However, given the low intensities of
the C-4 signals of valine, the
signal-to-noise ratio would be
too low to allow detection of C-2 and
C-3
signals.
 |
DISCUSSION |
Our results show the activity of a reversible GLDH in F. succinogenes S85. In the reaction leading to glutamate synthesis, GLDH activity was measured with NADH or NADPH as the cofactor in
sonicated extracts of cells grown in a medium containing 0.5 or 13 mM ammonia.
We found no GS activity in F. succinogenes S85. The enzyme
may be present in the cells, but its activity may be very low and therefore undetected by 1H NMR. It is also possible that
the synthesis of glutamine in F. succinogenes occurs via
asparagine synthetase, replacing GS in a coupled system similar to that
of GS-glutamine:
-oxoglutarate aminotransferase (GOGAT), as shown
previously for other rumen bacteria (7).
We showed the synthesis of alanine from pyruvate and ammonia (ADH
activity [reaction III]), with NADPH as the cofactor. The reverse
reaction was not detected.
GLDH and ADH thus seem to be the main pathways of direct assimilation
of ammonia in F. succinogenes. These systems are generally considered low-affinity systems for the integration of ammonia, while
the GS-GOGAT couple is the highest-affinity enzyme system (23). In the rumen, GS is thought to play a major role when the ammonia concentration is low while GLDH is thought to be
predominant when the rumen ammonia concentration is high (18,
23). The rumen ammonia concentration varies with diet, from 1 mM
with a low-protein diet to 40 mM, transiently, with a nitrogen-rich
diet (23). However, enzyme activities measured in individual
rumen bacterial species do not always fit this general assumption and suggest that GLDH may be the main pathway of ammonia assimilation. For
example, in Selenomonas ruminantium cultured with low
concentrations of ammonia, GS activity was predominant but GLDH was
still active and never repressed and GOGAT was not overexpressed
(20). In Ruminobacter amylophilus, although
ammonia limitation resulted in repression of GLDH and stimulation of
GS, GOGAT was not detected (11). In Ruminococcus
flavefaciens, GLDH was induced in ammonia-limited cultures
(6), and in Streptococcus bovis, GLDH activity
was much higher than GS activity (10).
In the nonruminal species Bacteroides fragilis, NAD- and
NADP-dependent GLDH activities with high affinities for ammonia
(Km = 0.8 mM) and a negligible GS activity were
found. GLDH activity was not repressed under ammonia limitation
(25). These results recall those obtained with F. succinogenes.
The role of ADH in ammonia assimilation in the rumen is not yet fully
understood, although enriched alanine was the main labeled amino acid
when rumen microbial cells were incubated with
15NH4+ (2). However,
results obtained with pure cultures may differ significantly from
results obtained with rumen content. Assimilation of
15NH4+ by pure culture of the
predominant noncellulolytic bacteria Prevotella bryantii
B14, Selenomonas ruminantium HD4, and
Streptococcus bovis ES1 was shown to be affected by the
addition of amino acids or peptides to the culture medium, but
glutamate and aspartate were always formed de novo to a greater extent
than the other amino acids, including alanine (1).
The two transaminases most commonly found in rumen microorganisms
(23), i.e., glutamate-pyruvate and glutamate-OAA
transaminases, were found in F. succinogenes by both
enzymatic assays and 1H NMR. This last approach is very
easy and straightforward, allowing unambiguous identification of the
reaction products.
In in vivo incubations in the presence of ammonia and
[1-13C]glucose, only a few amino acids were detected by
13C NMR, suggesting a very efficient incorporation of amino
acids into proteins in F. succinogenes cells. The detected
amino acids were aspartate, glutamate, alanine, and valine. Aspartate
results from the activity of glutamate-OAA transaminase (reaction VI), glutamate results from GLDH activity (reaction I) or from
transaminations (reactions V and VI), alanine can be synthesized from
ADH (reaction III) or glutamate-pyruvate transaminase (reaction V)
activity or from decarboxylation of aspartate, and valine can be
synthesized, as in many bacteria, from the condensation of two
pyruvates (9) via
-acetolactate. This intermediate was
previously identified in F. succinogenes extracts
(17).
The most important result in this work concerns the modification of
fluxes of carbon metabolism induced by the presence of ammonia. When
ammonia was added to resting cells metabolizing glucose, the flux to
glycogen synthesis was decreased and those to acetate and succinate
syntheses were increased. We showed that, under these conditions,
NH4+ was consumed and that amino acids and
macromolecules were synthesized, probably in place of glycogen. The
presence of ammonia also modified the ratio of succinate to acetate in
favor of acetate. The increase in the rate of conversion of glucose
into acetate may be explained by the need of ATP for the synthesis of
amino acids, ATP being directly provided by the acetate synthesis
pathway. This increase in acetate production at the expense of
succinate may result from the reversal of the succinate synthesis
pathway (see below).
Although glycogen synthesis was decreased by 50%, the reversal of
glycolysis from triose-phosphate (16) was not modified by
the presence of ammonia, as the ratio of the integrals of
[1-13C] and [6-13C]glycogen (about 3) was
not affected by the presence of ammonia. The storage of
[1-13C]glycogen results from incorporation of
[1-13C]glucose-6-phosphate (G 6P) synthesized either
directly from [1-13C] glucose or after reversal of
glycolysis, whereas the storage of [6-13C]glycogen
results only from reversal of glycolysis. The constancy of the ratio of
[1-13C]glycogen to [6-13C]glycogen
indicates that the flux of G 6P entering the pathway of glycogen
synthesis with or without reversal of glycolysis is not modulated by
ammonia, suggesting a mechanism of regulation of this flux.
The analysis of the percentage of 13C enrichment of
succinate C-2, measured by 13C-FSED 1H NMR,
indicated that the contribution of glycogen to the synthesis of the
metabolites was not modified by the presence of ammonia and therefore
that futile glycogen cycling was still effective under this condition.
With or without ammonia, about 16% of the glucose molecules entering
glycolysis come from prestored glycogen. However, the percentage of
13C enrichment of C-2 of acetate was decreased from 40 to
31%. This result was explained by an increase (sevenfold) in the flux
through the reverse succinate pathway. This reversal was confirmed (i) by the labeling of the carboxylate of acetate and (ii) by the labeling
of the amino acids. The labeling of aspartate C-2 reflects the labeling
of OAA C-2 and thus proves the reversal from fumarate to OAA (Fig. 5).
The labeling of acetate C-1, previously observed in the absence of
ammonia (16), reflects the labeling of pyruvate C-2 (Fig.
5). Pyruvate can be synthesized from OAA via two routes: either
directly through the activity of OAA-decarboxylase or indirectly through the combined activities of phosphoenolpyruvate-carboxykinase and pyruvate kinase. OAA-decarboxylase and
phosphoenolpyruvate-carboxykinase activities could not be measured in
F. succinogenes extracts owing to the very high activity of
malate dehydrogenase (unpublished results). Consequently, we do not yet
know which of these two enzymes is involved in this step.
Such a reversal from OAA to pyruvate was also observed in rabbit kidney
tubule (4). It was due to OAA-decarboxylase activity and was
greatly stimulated by the addition of ammonia to the cells. In these
cells, the addition of NH4Cl also increased glucose
conversion into metabolites (4). These results recall those
obtained with F. succinogenes cells and reflect the
regulation of carbon metabolism by ammonia.
Until now, no information concerning nitrogen metabolism in F. succinogenes has been available. Our work shows some of the enzymes involved in ammonia assimilation and amino acid synthesis in
this bacterium. Furthermore, the use of 13C and
1H NMR enabled us to quantify the modulation of carbon
fluxes by ammonia. Also, we showed that the futile cycles previously
found in F. succinogenes, i.e., reversal of glycolysis,
simultaneous synthesis and degradation of glycogen, and reversal from
fumarate to pyruvate, were still effective in the presence of ammonia, under conditions closer to physiological conditions. It would now be
interesting to determine whether these futile cycles are present under
conditions where succinate does not accumulate, such as in the rumen.
For this purpose, we could apply a similar approach to coincubations of
cells of F. succinogenes and of a succinate-utilizing strain
such as Selenomonas ruminantium (22).
 |
ACKNOWLEDGMENTS |
This work was supported by a grant to C.M. from the Centre
National de la Recherche Scientifique and the Région Auvergne. T.L. was an invited professor at the Université Blaise Pascal of
Clermont-Ferrand.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Laboratoire de
Microbiologie, INRA, Centre de Recherches de Clermont-Ferrand-Theix, 63122 Saint-Genès-Champanelle, France. Phone: 33 (0)4 73 62 42 75. Fax: 33 (0)4 73 62 45 81. E-mail:
gaudet{at}clermont.inra.fr.
Present address: Slovak Technical University, Central Laboratories,
81237 Bratislava, Slovakia.
 |
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