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Applied and Environmental Microbiology, November 2000, p. 4615-4619, Vol. 66, No. 11
School of Biological Sciences, University of
Nebraska, Lincoln, Nebraska 68588-0666
Received 13 March 2000/Accepted 17 August 2000
Helaeomyia petrolei (oil fly) larvae inhabit the
asphalt seeps of Rancho La Brea in Los Angeles, Calif. The culturable
microbial gut contents of larvae collected from the viscous oil were
recently examined, and the majority (9 of 14) of the strains were
identified as Providencia spp. Subsequently, 12 of the
bacterial strains isolated were tested for their resistance or
sensitivity to 23 commonly used antibiotics. All nine strains
classified as Providencia rettgeri exhibited dramatic
resistance to tetracycline, vancomycin, bacitracin, erythromycin,
novobiocin, polymyxin, colistin, and nitrofurantoin. Eight of nine
Providencia strains showed resistance to spectinomycin, six
of nine showed resistance to chloramphenicol, and five of nine showed
resistance to neomycin. All 12 isolates were sensitive to nalidixic
acid, streptomycin, norfloxacin, aztreonam, cipericillin, pipericillin,
and cefotaxime, and all but OF008 (Morganella morganii)
were sensitive to ampicillin and cefoxitin. The oil fly bacteria were
not resistant to multiple antibiotics due to an elevated mutation rate.
For each bacterium, the number of resistant mutants per 108
cells was determined separately on rifampin, nalidixic acid, and
spectinomycin. In each case, the average frequencies of resistant colonies were at least 50-fold lower than those established for known
mutator strain ECOR 48. In addition, the oil fly bacteria do not appear
to excrete antimicrobial agents. When tested, none of the oil fly
bacteria produced detectable zones of inhibition on Pseudomonas
aeruginosa, Escherichia coli, Staphylococcus
aureus, or Candida albicans cultures. Furthermore,
the resistance properties of oil fly bacteria extended to organic
solvents as well as antibiotics. When pre-exposed to 20 µg of
tetracycline per ml, seven of nine oil fly bacteria tolerated overlays
of 100% cyclohexane, six of nine tolerated 10% xylene, benzene, or
toluene (10:90 in cyclohexane), and three of nine (OF007, OF010, and
OF011) tolerated overlays of 50% xylene-50% cyclohexane. The
observed correlation between antibiotic resistance and organic solvent
tolerance is likely explained by an active efflux pump that is
maintained in oil fly bacteria by the constant selective pressure of La
Brea's solvent-rich environment. We suggest that the oil fly bacteria
and their genes for solvent tolerance may provide a microbial reservoir
of antibiotic resistance genes.
Environments containing high
concentrations (10 to 50%, vol/vol) of organic solvents are considered
extreme (2). Bacteria able to tolerate such environments
have recently been recognized as a subgroup of the extremophiles
(2). In this regard, our laboratory has been studying the
microbes found in the larval gut of the oil fly, Helaeomyia
petrolei (9). Thorpe (21) referred to the
oil fly as "one of the chief biological curiosities of the world,"
since its larvae are found exclusively submerged in oil with their
larval guts visibly full of petroleum, tar, or asphalt (9,
21). In a previous paper we quantified the microbial gut contents
of H. petrolei larvae obtained from the asphalt seeps of
Rancho La Brea in Los Angeles, Calif. (9). Aerobic
incubation of Luria-Bertani (LB), MacConkey, and blood agar plates
indicated that each larva contained ca. 2 × 105
heterotrophic bacteria, a value roughly 1,000 times greater than the
number of bacteria detected in free oil without H. petrolei larvae. All of the bacteria isolated were nonsporeformers and gram
negative. Based on representative colony morphologies, 14 isolates were
chosen and then identified by using the Enterotube II and API 20E
systems, as well as fatty acid analysis (9). Nine of the 14 isolates were identified as Providencia rettgeri (9).
Providencia spp. are common agents of nosocomial infections
and are now of significant medical interest (5, 8, 20). As a
group, they are refractory to treatment with commonly administered antibiotics, disinfectants, and topical heavy metal-containing medications (8). Providencia stuartii, which is
closely related to and often mistaken for P. rettgeri
(8), is considered a multiresistant species based on its
resistance to a wide range of antibiotics (5, 20). When the
mechanisms involved in antibiotic resistance were studied, they were
found to be chromosomally encoded (17, 20). In a major
survey of antibiotic susceptibility and resistance in
Providencia spp., Stock and Wiedemann (20)
examined 116 clinical isolates of Providencia (38 P. rettgeri isolates, 35 P. stuartii isolates, 23 Providencia alcalifaciens isolates, and 20 Providencia
rustigianii isolates) to determine their susceptibility or
resistance to 71 antibiotics (20). They found that P. stuartii was the most resistant of the Providencia
spp., P. alcalifaciens and P. rustigianii were the most susceptible, and P. rettgeri strains were in between (20). For example, all
of their clinical isolates of P. rettgeri were naturally
resistant to tetracyclines and fosfomycin (20).
In the present study we examined 12 bacteria isolated from oil
fly larvae (9) to determine their natural susceptibility or
resistance to 23 antibiotics. This study was based on the premise that there is a causal overlap between antibiotic resistance and the
mechanisms needed for bacterial survival in organic solvents. It is
further postulated that because of their relative antiquity Strains and media.
Stocks of oil fly isolates OF001, OF003,
and OF005 through OF014 (9) were maintained on LB agar
supplemented with 2% glucose. Liquid cultures were grown in LB medium
plus 2% glucose at 35°C with shaking (200 rpm). The quality control
organisms used for antibiotic sensitivity tests, Pseudomonas
aeruginosa ATCC 27853, Escherichia coli ATCC 25922, and
Staphylococcus aureus ATCC 25923, were maintained on blood
agar plates. Two mutator analysis controls, ECOR 48 and E. coli K-12 strain W3110, were maintained on LB agar.
Antibiotic susceptibility.
Antibiotic susceptibility tests
were done with BBL Sensi-Disc antimicrobial susceptibility test discs
as described in the manufacturer's (Becton Dickinson) product handout
revised in December 1997. A complete list of the antibiotics tested is
shown in Table 1. LB medium plus 2%
glucose was used as the growth medium, and 1.5% agar was added as
necessary.
0099-2240/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Natural Antibiotic Resistance of Bacteria Isolated
from Larvae of the Oil Fly, Helaeomyia petrolei
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ABSTRACT
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
![]()
INTRODUCTION
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
the asphalt seeps at Rancho La Brea have been in existence for at least
40,000 years (18)
the genes for bacterial survival in organic solvents could have provided microbial reservoirs of antibiotic resistance genes in nonpathogenic bacteria. These reservoirs could act
as donors (4) of antibiotic resistance to pathogenic
bacteria by horizontal transfer (12).
![]()
MATERIALS AND METHODS
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
TABLE 1.
Sensitivity of the oil fly bacteria to
23 antibioticsa
Antimicrobial agent production. Production of an antimicrobial agent by oil fly isolates was tested by preparing lawns of P. aeruginosa ATCC 27853, E. coli ATCC 25922, S. aureus ATCC 25923, or Candida albicans A72 as described above for the susceptibility tests. Oil fly isolates were grown at 30°C in 5 ml of LB medium containing 2% glucose with shaking (200 rpm). After 16.5 h, 1 ml of each culture was centrifuged at room temperature for 2 min at 14,000 rpm in an Eppendorf model 5414 centrifuge. Cell supernatants were decanted and saved, and pellets resuspended in 0.5 ml of 0.85% sodium chloride. Each concentrated cell suspension or supernatant was spotted (20 µl) onto four lawns of potentially susceptible organisms and allowed to soak into the agar. Plates were incubated at 35°C, and zones of inhibition were measured initially after 16 to 18 hours and then again after 48 h.
Mutator percentage analysis. Mutator percentage analysis was performed on the oil fly isolates as described by LeClerc et al. (11). The frequencies with which 108 log-phase bacteria became resistant to rifampin (150 µg/ml), spectinomycin (150 µg/ml), and nalidixic acid (20 µg/ml) were measured after 24 h of incubation and compared to the data obtained for the positive and negative controls, (ECOR 48 and E. coli K-12 strain W3110, respectively). According to LeClerc et al. (11), a strain is considered to be hypermutable if both the following conditions are met: (i) the frequency of mutation is at least 50-fold greater than that of the negative control (E. coli K-12 strain W3110) and (ii) a 50-fold increase in mutation frequency is observed on at least two of three antibiotics, indicating that there is a general mutator, not a mutator specific to just a few genes.
Tetracycline potentiation. The tetracycline potentiation of solvent tolerance was shown by spotting 106 cells (15 µl) from an overnight culture onto LB agar plates containing 2% glucose with or without 20 µg of tetracycline per ml. Glass petri dishes were used. The spots were allowed to soak into the agar for 10 to 15 min, and then the plates were overlaid with organic solvent added to a depth of 2 mm. Five different solvents were employed: (i) 100% cyclohexane, (ii) 10% xylene-90% cyclohexane, (iii) 50% xylene-50% cyclohexane, (iv) 10% benzene-90% cyclohexane, and (v) 10% toluene-90% cyclohexane (all by volume). After 6 h the solvents were removed and the plates were incubated at 30°C overnight. The next day the plates were scored as follows: no growth, six or more isolated single colonies, or confluent growth. Three trials were performed with independent cultures on separate days.
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RESULTS |
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Antibiotic resistance. Twelve of the 14 cultures obtained from oil fly larvae (9), including all 9 of those identified as P. rettgeri, were tested to determine their disc sensitivity or resistance to 23 commonly used antibiotics (Table 1). All 9 of the P. rettgeri strains were highly resistant to tetracycline, vancomycin, bacitracin, erythromycin, novobiocin, polymyxin, rifampin, colistin, and nitrofurantoin, while eight of the nine strains were highly resistant to spectinomycin. In each case, the level of resistance was dramatic; either there were no zones of inhibition around the 6-mm discs or the zones of inhibition were significantly smaller than those defined as indicating resistance in other bacteria (Table 1). The P. rettgeri strains also exhibited variable resistance to chloramphenicol and neomycin. The resistance was variable in that only some of the P. rettgeri strains were resistant and those that were resistant still showed significant zones of inhibition around the antibiotic-containing discs. In contrast, the P. rettgeri strains were highly sensitive to nalidixic acid, streptomycin, norfloxacin, aztreonam, ampicillin, ciprofloxacin, cefoxitin, cefotaxime, and piperacillin and were intermediate or sensitive to kanamycin and tobramycin (Table 1).
Oil fly bacteria as antibiotic producers. Antibiotic-producing microorganisms are often resistant to the antibiotic which they produce because they contain a resistance gene as part of the biosynthetic cluster (19). Therefore, one explanation for our finding that the aerobic bacteria obtained from oil fly larvae are predominantly Providencia and Acinetobacter species (9) is that these bacteria derive a selective advantage by excreting antibiotics that inhibit other microorganisms. Such an occurrence would also explain why our P. rettgeri isolates were highly resistant to many commonly used antibiotics (Table 1). However, this scenario did not prove to be correct. When tested on LB agar containing 2% glucose, none of the 12 oil fly bacterial cell suspensions or their supernatants produced detectable zones of inhibition on lawns of P. aeruginosa, E. coli, S. aureus, or the dimorphic fungus C. albicans (data not shown).
Oil fly bacteria as mutator strains.
Another possible
explanation for the prevalence of antibiotic resistance among the
Providencia strains isolated from oil fly larvae is
that they are mutator strains (11). Mutator strains are known to persist in wild-type bacterial populations. For instance, 1 of the 72 strains of E. coli which make up the ECOR
reference collection (16) is known to be a mutator strain.
ECOR 48 was shown (11) to be both MutS
and
hypermutable. By this reasoning, mutator strains would have been
selected on the basis of their ability to adapt to the organic solvent
stress of the La Brea asphalt seeps and concomitantly the mutator
phenotype would have led to the appearance of antibiotic-resistant Providencia strains. LeClerc et al. (11) detected
MutS
strains of E. coli based on a 50-fold
increase in the spontaneous appearance of mutants resistant to
rifampin, nalidixic acid, and/or spectinomycin. Accordingly, we
analyzed our 12 oil fly bacteria for hypermutability (Table
2) compared to the known positive and negative controls (11), ECOR 48 and E. coli K-12 strain W3110, respectively. The experiments measuring
resistance to nalidixic acid were straightforward in that all of the
oil fly bacteria were initially sensitive to nalidixic acid (Table 1).
Although 11 of the oil fly isolates were resistant to the 5-µg
rifampin discs (Table 1), MIC analysis determined that the
concentration of rifampin used in the mutator analysis (150 µg/ml)
was sufficient to inhibit the growth of these organisms (data not
shown). The situation with spectinomycin, however, was more
complicated. The oil fly isolates that fell in the intermediate
category with regard to sensitivity to spectinomycin (Table 1), as well
as the spectinomycin-sensitive control organism E. coli K-12
strain W3110, were assayed to determine their mutation frequencies. The
remaining strains were already resistant to 100 µg of spectinomycin
per ml and, therefore, could not be tested.
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Tetracycline potentiates solvent tolerance.
The efflux pumps
of gram-negative bacteria expel a remarkably broad range of
antimicrobial compounds, including antibiotics, detergents,
dyes, and organic solvents (22). The linkage between antibiotic resistance and solvent tolerance in P. rettgeri
is shown nicely by comparing the abilities of oil fly bacteria to survive in an overlay consisting of 100% solvent with and without prior exposure to tetracycline (Table 3).
On LB agar plus 2% glucose, four of the nine isolates tested were able
to form colonies after 6 h of exposure to either 100%
cyclohexane or a benzene-cyclohexane (1:9) mixture. Three of the
isolates (OF007, OF010, and OF011) also survived when they were
exposed to xylene-cyclohexane (1:9) and toluene-cyclohexane (1:9)
mixtures (Table 3). However, cell survival was dramatically enhanced by
prior incubation with 20 µg of tetracycline per ml. With tetracycline
present, seven of the nine isolates were able to tolerate 100%
cyclohexane, six tolerated benzene-cyclohexane and toluene-cyclohexane
(both 1:9), and three tolerated xylene-cyclohexane (1:1).
Moreover, the most solvent-tolerant isolates (OF007, OF010, and
OF011) exhibited confluent growth after exposure to overlays containing
10% xylene, benzene, or toluene (Table 3).
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DISCUSSION |
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We examined the antibiotic susceptibility and resistance patterns of 12 gram-negative bacteria obtained from oil fly larvae (9) by using 23 commonly used antibiotics. The strains of P. rettgeri used were highly resistant to tetracycline, vancomycin, bacitracin, erythromycin, novobiocin, polymyxin, rifampin, colistin, nitrofurantoin, and spectinomycin. With regard to lessons which can be learned from the chemical structures of the antibiotics used in this study, it seems clear that (i) the nine strains of P. rettgeri are sensitive to all of the penicillin and cephalosporin derivatives tested; (ii) they are sensitive to antibiotics which target DNA gyrase; (iii) they are resistant to the peptide antibiotics, probably through size exclusion by virtue of being gram negative; and (iv) they are resistant to a diverse collection of comparatively hydrophobic antibiotics (chloramphenicol, erythromycin, nitrofurantoin, novobiocin, rifampin, spectinomycin, and vancomycin), most of which contain aromatic ring systems. In part, this antibiotic resistance pattern is not all that surprising because Providencia spp. are known to be highly resistant to antibiotics (5, 8, 20). However, this conclusion was based on examinations of clinical isolates (5, 20), and one has to assume that clinical isolates have been subjected to antibiotic stress. In contrast, we studied bacteria taken from insect larvae, which are natural inhabitants of the La Brea asphalt seeps in California. Oil fly larvae are carnivores whose chief source of food is other insects or animals trapped in the sticky oil (21). Presumably, these bacteria have never been subjected to antibiotic stress.
Oil fly bacteria have, however, been subjected to the energetic stress inherent in a solvent-rich environment (2). For instance, growth of a solvent-tolerant Pseudomonas putida strain in 6 mM toluene decreased the maximum cell yield by 33% (6). Part of the energy burden is derived from a membrane-associated organic solvent efflux system (10). The importance of this solvent efflux system is evident from its ability to impart a solvent-resistant phenotype to solvent-sensitive strains of P. putida (10). Such efflux systems are involved in extrusion of hydrophobic molecules. Apart from this, they are rather nonspecific in their substrate requirements (14), leading to the expectation that a single efflux system may pump out both organic solvents and antibiotics (22). This expectation is fulfilled in the case of P. putida (7); preculturing this bacterium in toluene made it more resistant to hydrophobic antibiotics (7). In addition, we found that the percentage of P. rettgeri cells which survived exposure to benzene, xylene, toluene, and cyclohexane was increased by preincubation of the bacteria in the presence of 20 µg of tetracycline per ml.
It is tempting to speculate that the survival of P. rettgeri in the La Brea asphalt seeps depends on the ability of the cells to pump out a wide variety of aromatic and polyaromatic hydrocarbons. Although it is not yet known whether organic solvent stress selects for multiple-drug-resistant (MDR) strains in the wild, such selection has been shown to occur in the laboratory, at least for P. aeruginosa (13). Work by Li and Poole (13) suggests that an MDR efflux system in P. aeruginosa is a common mechanism for achieving organic solvent tolerance and antibiotic resistance. A similar correlation has been reported for E. coli (1), and, based on data presented in this paper, it is likely that the same mechanism is at work in our P. rettgeri oil fly isolates. This rationale is strengthened when one considers that the enrichment process at the La Brea asphalt seeps has maintained a constant selective pressure for organisms adapted to organic solvents for over 40,000 years (18).
The evolutionary origins of the genes for antibiotic resistance are not yet known. Bacteria isolated more than 65 years ago, in the preantibiotic age, contained plasmids but lacked the antibiotic resistance genes that we find on those plasmids today (15). Therefore, according to O'Brien et al. (15), the dozens of resistance genes that we now find in various combinations on plasmids of clinical isolates must have either (i) not evolved yet or (ii) been "lurking in more obscure strains," waiting to "emerge from obscure genomes to become deployed on plasmids under the selective pressure of antibacterial usage." We suggest that the oil fly bacteria and their genes for solvent tolerance may be candidates for some of the obscure genes from obscure strains from which current antibiotic resistance genes have evolved.
Regardless of the origins of MDR strains, it is important to understand the impact that solvent contamination of natural environments may have on the development of these strains. Contamination of soils, groundwater, and surface water bodies by petroleum fuel spills is common in industrialized nations (3). Limited resource availability and inadequate toxic waste control (3) increase the likelihood that contamination will occur in our own communities and the likelihood that we will come into close contact with MDR microbes. Rather than focus on artificially selected pure cultures of clinical isolates, we investigated the antibiotic resistance profiles of microorganisms inhabiting a natural system that includes an abundance of potential microbial competitors. The former organisms are subject to the stress inherent to modern antibiotic therapy, while the latter organisms are exposed to asphalt seeps containing high concentrations of organic solvents. Either way, the result remains the same: multiple-antibiotic-resistant microbes emerge. Thus, in nature there is more than one way to become resistant to antibiotics, and information regarding the acquisition of resistance genes may lead to more reasonable ways to combat them.
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ACKNOWLEDGMENTS |
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This research was supported by a grant from the Nebraska Corn Board. T.H. was supported in part by the Dreyfus program, Department of Biochemistry, University of Nebraska, and by the Undergraduate Creative Activity and Research Experience (UCARE) Program, University of Nebraska.
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FOOTNOTES |
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* Corresponding author. Mailing address: School of Biological Sciences, University of Nebraska, Lincoln, NE 68588-0666. Phone: (402) 472-2253. Fax: (402) 472-8722. E-mail: knickerson1{at}unl.edu.
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