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Applied and Environmental Microbiology, March 2000, p. 1243-1248, Vol. 66, No. 3
0099-2240/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Staphylococcal Surface Display of Metal-Binding
Polyhistidyl Peptides
Patrik
Samuelson,1
Henrik
Wernérus,1
Malin
Svedberg,2 and
Stefan
Ståhl1,*
Department of Biotechnology1 and
Department of Analytical Chemistry,2
Kungliga Tekniska Högskolan, S-100 44 Stockholm, Sweden
Received 12 October 1999/Accepted 20 December 1999
 |
ABSTRACT |
Recombinant Staphylococcus xylosus and
Staphylococcus carnosus strains were generated with
surface-exposed chimeric proteins containing polyhistidyl peptides
designed for binding to divalent metal ions. Surface accessibility of
the chimeric surface proteins was demonstrated and the chimeric surface
proteins were found to be functional in terms of metal binding, since
the recombinant staphylococcal cells were shown to have gained
Ni2+- and Cd2+-binding capacity, suggesting
that such bacteria could find use in bioremediation of heavy metals.
This is, to our knowledge, the first time that recombinant,
surface-exposed metal-binding peptides have been expressed on
gram-positive bacteria. Potential environmental or biosensor
applications for such recombinant staphylococci as biosorbents are discussed.
 |
TEXT |
A rapidly emerging research field
involves bacterial surface expression of metal-binding peptides
(16, 17, 36, 37, 40) for potential generation of novel
biosorbents for removal of toxic metals from wastewater. Bacterial
sequestration of toxic metals has previously been investigated using
nonengineered bacteria (23), but recombinant DNA technology
offers the possibility of improving the metal binding capacity of the
bacteria. Such engineered bacteria have in fact been evaluated for
removal of Cd2+ from actual factory wastewater
(2). Periplasmic expression of a Neurospora
crassa metallothionein in Escherichia coli generated cells that were superior to bacteria with cytoplasmic metallothionein localization in terms of metal ion adsorption (29). Surface expression on E. coli cells of yeast or mammalian
metallothioneins resulted in recombinant bacteria with increased
ability to bind Cd2+ ions (37). Surface
expression of hexahistidyl peptides by genetic insertion into the outer
membrane protein LamB generated recombinant E. coli cells
with improved metalloadsorption capacity (36). Histidine
clusters have also been expressed in fimbrial proteins (33),
generating bacteria with improved metal binding. Other metal-binding
peptides have been expressed in the periplasm (30) or at the
cell surface (16, 17, 33) of E. coli, yielding bacteria with enhanced capacity to bind to divalent metal ions.
Attempts to create recombinant bacteria with improved metal-binding
capacity have so far been restricted to E. coli.
Gram-positive surface display systems have been suggested to exhibit
some advantages compared to gram-negative bacteria (21, 38):
(i) translocation through only one membrane is required, and (ii)
gram-positive bacteria have been shown to be more rigid and therefore
less sensitive to shear forces (14, 27) due to the thick
cell wall surrounding the cells, and thus they are potentially more
suitable for field applications such as bioadsorption. For metal
adsorption applications, gram-positive bacteria have the additional
advantage of having inherent metal-binding capacity due to the thick
peptidoglycan layer (23). Two gram-positive bacteria which
have been investigated extensively for various surface display
applications are the nonpathogenic bacteria Staphylococcus
xylosus and Staphylococcus carnosus (12, 24, 31,
32), which are both used traditionally as starter cultures in
meat fermentation applications (11, 18). These staphylococci
have been evaluated as live bacterial vaccine delivery vehicles, having
foreign antigenic determinants of bacterial, viral, or protozoan origin
displayed on their surface (38), but also for the display of
single-chain Fv antibody fragments (9) with potential
diagnostic applications. Moreover, the two staphylococcal species, and
in particular S. carnosus, have been described to have very
low extracellular proteolytic activity (6), which should be
beneficial since heterologously expressed surface proteins could
thereby be stable for extended times postexpression. Here, we have
evaluated the S. xylosus and S. carnosus surface display systems for expression of two different polyhistidyl peptides, His3-Glu-His3 and His6. Targeting
of the encoded gene products to the cell wall and surface accessibility
of the chimeric surface proteins, as well as their functionality in
terms of metal binding, have been investigated.
Expression vectors for display of polyhistidyl peptides on
staphylococci.
The strains and plasmids used in this study are
listed in Table 1. DNA linkers encoding
the two different metal-binding peptides His3-Glu-His3 (19), denoted H1, and
His6, denoted H2, were constructed by annealing
oligonucleotide SP12
(5'-GATCCGGAACACCATCATGAACACCACCATGAC-3') to SP13
(5'-TCGAGTCATGGTGGTGTTCATGATGGTGTTCCG-3') and SP14
(5'-GATCCGGAACACCATCATCACCACCATGACGAC-3') to SP15
(5'-TCG AGTCGTCATGGTGGTGATGATGGTGTTCCG-3'), respectively. The generated linkers were inserted into the
BamHI/SalI-restricted shuttle-vectors
pSEmp18ABPXM (31) and pSPPmABPXM (32),
resulting in expression vectors pSEH1ABPXM, pSEH2ABPXM,
pSPPH1ABPXM, and pSPPH2ABPXM (Fig.
1), respectively. Correct nucleotide
sequences were verified by solid-phase DNA sequencing (13).
Preparation and transformation of protoplasts from S. xylosus and S. carnosus were performed as described by
Götz and coworkers (7, 8). The six recombinant
staphylococci, for simplicity denoted Sx:ABP, Sx:H1ABP, Sx:H2ABP,
Sc:ABP, Sc:H1ABP, and Sc:H2ABP, are schematically depicted in Fig. 1,
with their encoded surface proteins illustrated as anchored to the cell
wall of S. xylosus or S. carnosus, as appropriate. The S. xylosus expression vectors (Fig. 1A to
C) take advantage of the promoter and signal sequence from
Staphylococcus aureus protein A (SpA) (43), while
the S. carnosus vectors (Fig. 1D to F) utilize the promoter,
signal sequence, and propeptide sequence from a Staphylococcus
hyicus lipase gene construct (32). Both vector systems
contain gene fragments from SpA, comprising X, a charged repetitive
region postulated to interact with the peptidoglycan cell wall
(10), and M, a region common for many gram-positive cells
surface-bound proteins and required for cell surface anchoring
(35, 42). The gene encoding an albumin-binding protein
(ABP), derived from streptococcal protein G (26, 32), is
also present in all expression vectors. The ABP region is expressed as
the part of the recombinant receptor closest to the cell wall anchoring
motifs. It has been demonstrated to be useful as a reporter peptide in
a colorimetric assay to analyze surface accessibility of hybrid surface
proteins (32), as an affinity tag for recovery of chimeric
surface proteins (32), and as a spacer protein to increase
the surface accessibility of displayed proteins (38).

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FIG. 1.
Expression cassettes of the different expression vectors
designed for surface displays on S. xylosus and S. carnosus shown with their encoded gene products anchored to the
cell surface. The names of the constructed expression vectors are given
below the expression cassettes, the molecular masses of the encoded
surface proteins are indicated, and the abbreviated names of the
recombinant staphylococci are shown to the right. Note that the
propeptide (PP) from the S. hyicus lipase gene construct is
not processed in S. carnosus but is processed in its
homologous host, S. hyicus (32). This propeptide
has been suggested to be essential for secretion of heterologous gene
fusion products from S. carnosus (4) when using
the lipase signal peptide for secretion. M', the processed and
covalently anchored form of the M sequence of SpA; pSPA,
promoter region from the SpA gene; pLip, S. hyicus promoter region designed for production in S. carnosus (6).
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Recovery and characterization of chimeric surface proteins.
In
order to investigate whether the expressed chimeric surface proteins
(Fig. 1) were successfully produced and targeted to the cell wall, the
recombinant staphylococci were grown to early logarithmic phase and
subjected to lysostaphin treatment to release cell wall-bound material,
as described earlier in detail (32). The chimeric surface
proteins were subsequently recovered by ABP-mediated affinity
purification on human serum albumin (HSA) columns (26, 39).
The affinity-purified chimeric proteins were then subjected to sodium
dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) analysis
followed by Coomassie staining of the gel (Fig.
2). As can be seen in Fig. 2, full-length
proteins could be recovered from the cell wall fractions of the
recombinant staphylococci. The released proteins, and in particular
those recovered from S. carnosus, all migrated as somewhat
larger than their corresponding theoretical molecular weights (see Fig.
1). This phenomenon has also been observed for similar staphylococcal
proteins (1, 9, 32, 41). These results demonstrate that the
hybrid receptors were localized to the cell walls of the recombinant
S. xylosus and S. carnosus cells. Furthermore,
the extracted hybrid surface proteins display serum albumin-binding
capacity, since full-length fusion proteins could be recovered by HSA
affinity chromatography. However, proper surface accessibility and
functionality of the hybrid receptors on intact recombinant
staphylococci remained to be demonstrated.

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FIG. 2.
Characterization of gene products by SDS-PAGE (10 to
20% polyacrylamide) analysis under reducing conditions. Coomassie
brilliant blue was used for staining. The chimeric surface proteins
were extracted from the cell wall of the recombinant staphylococci and
subsequently subjected to single-step ABP-mediated HSA affinity
chromatography. Lane 1, Sx:ABP, lane 2, Sx:H1ABP; lane 3, Sx:H2ABP;
lane 4, Sc:ABP; lane 5, Sc:H1ABP; lane 6, Sc:H2ABP; lane M, marker
proteins with molecular masses (in kilodaltons).
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Surface accessibility of chimeric surface proteins.
The
surface accessibility of the displayed chimeric proteins on whole-cell
staphylococci was analyzed by a previously described colorimetric assay
(32), again by taking advantage of ABP present in the
chimeric surface proteins as a reporter peptide. Recombinant and
wild-type staphylococci were grown to early logarithmic phase, harvested, and then incubated with biotinylated HSA, followed by an
incubation with a streptavidin-alkaline phosphatase conjugate. The
presence of surface-displayed ABP-containing surface proteins was
detected using a chromogenic substrate. All recombinant staphylococci showed a significant positive response, while wild-type S. xylosus and S. carnosus, as expected, were negative in
this assay (data not shown). The chimeric surface proteins were thereby
shown to be targeted and anchored, in accessible forms, to the outer
surface of the recombinant staphylococci. The magnitudes of the
responses were significantly higher for the S. carnosus
constructs (data not shown). These findings are in accordance with
earlier results, since it has been demonstrated that the S. carnosus system displays approximately 10,000 recombinant surface
proteins per bacterial cell while the S. xylosus system
generates bacteria with approximately 3,000 surface-exposed proteins
(1, 31). Furthermore, the levels of surface expression of
chimeric proteins containing the polyhistidyl peptides were found to be
of the same magnitude as those constructs encoded by the parental
vectors (data not shown), suggesting that the surface density was not
reduced by the introduction of the polyhistidyl peptides.
Functional analysis of surface-displayed polyhistidyl
peptides.
To investigate whether the recombinant staphylococci had
obtained an improved ability to bind metal ions, recombinant and wild-type staphylococcal cells were incubated with a nickel-chelating alkaline phosphatase conjugate. This Ni2+-binding assay,
based on a previously described method (36), was performed
essentially in accordance with the colorimetric assay described above.
However, instead of incubating the cells with biotinylated HSA,
QIAexpress Ni-nitrilotriacetic acid (NTA)-alkaline phosphatase
conjugate (Qiagen, Hilden, Germany) was used. One-milliliter aliquots
of cell suspension (A578 = 1), in
phosphate-buffered saline (pH 7.5) supplemented with 0.05% Tween 20 (PBST), were incubated for 60 min at room temperature with
Ni-NTA-alkaline phosphatase conjugate at a dilution of 1:500. The cells
were then washed three times (the two first washes in PBST and the last in substrate buffer) before being resuspended in 1 ml of substrate buffer. Aliquots (100 µl) of each cell type were loaded into a microtiter plate, after which 100 µl of the substrate solution (p-nitrophenyl phosphate) was added. The change in
A405 was monitored for 60 min in an ELISA reader
(Fig. 3). It was demonstrated that the
recombinant S. xylosus cells carrying surface-displayed
polyhistidyl peptides, Sx:H1ABP (Fig. 3, bar 3) and Sx:H2ABP (Fig. 3,
bar 4), showed higher Ni2+-binding capacities than did
wild-type S. xylosus (Fig. 3, bar 1) and Sx:ABP (Fig. 3, bar
2). However, for the S. xylosus cells carrying the
discontinuous polyhistidyl peptide, Sx:H1ABP (Fig. 3, bar 3), the
increase in Ni2+ binding was not statistically significant
compared to Sx:ABP (Fig. 3, bar 2). A similarly improved
Ni2+-binding capacity could be observed for the recombinant
S. carnosus cells with polyhistidyl peptides exposed on
their surface, Sc:H1ABP (Fig. 3, bar 7) and Sc:H2ABP (Fig. 3, bar 8),
compared to wild-type S. carnosus (Fig. 3, bar 5) and Sc:ABP
(Fig. 3, bar 6). The continuous His6 peptide (H2) seemed in
both systems to give a significantly higher metal-binding capacity than
the discontinuous His3-Glu-His3-peptide (H1):
S. xylosus (Fig. 3, bars 3 and 4) and S. carnosus (Fig. 3, bars 7 and 8), respectively. Furthermore, the
results supported the indications from the ABP-based colorimetric assay
(see above), suggesting (i) that the chimeric proteins were
accessible on the staphylococcal cells and (ii) that S. carnosus cells display a significantly greater number of
recombinant proteins at their surfaces.

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FIG. 3.
Histogram representation of results from the whole-cell
Ni2+-binding assay. Wild-type and recombinant S. xylosus or S. carnosus cells were incubated with
nickel-chelated alkaline phosphatase conjugate. Upon addition of
substrate, the color response was monitored in five separate samples
from each construct. Hatched bars indicate the
A405 response for S. xylosus cells:
wild type (bar 1), Sx:ABP (bar 2), Sx:H1ABP (bar 3), and Sx:H2ABP (bar
4). Open bars indicate the A405 response for
S. carnosus cells: wild type (bar 5), Sc:ABP (bar 6),
Sc:H1ABP (bar 7), and Sc:H2ABP (bar 8). Error bars represent standard
deviations.
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Cd2+ binding.
In order to investigate whether the
recombinant staphylococci had gained an increased capability to adsorb
certain divalent heavy metal ions, a Cd2+ bioadsorption
assay was employed (29, 30). Wild-type and recombinant
staphylococci were gown to the same cell densities and tested for the
ability to absorb radioactive 109Cd added to the washed
cells at a concentration just above Cd2+ concentration
acceptable to drinking water (29). Overnight cultures of
recombinant and wild-type staphylococci were diluted to an
A578 of
0.08 in growth medium (containing
chloramphenicol when appropriate) and grown at 37°C to an
A578 of
1. Cell aliquots (10 ml) were
withdrawn, and, after sedimentation of the bacterial cells
(1,900 × g, 10 min), the cell pellets were washed (5 ml of 0.1 M Trizma base-HCl, pH 7.5) and resuspended in 5 ml of the same buffer. A stock solution of 109Cd was prepared
(30) by addition of 0.5 µCi of radioisotopic 109Cd (specific activity, 125 Ci/mmol) (Amersham Pharmacia
Biotech, Uppsala, Sweden) to 5 ml of a 20 µM CdCl2
solution, yielding a final specific activity of 5 Ci/mol. To the cell
suspension was added 50 µl of the 109Cd stock solution,
yielding a final concentration of 0.2 µM. The samples were incubated
with end-over-end mixing for 45 min at room temperature. Cells were
sedimented (1,900 × g, 10 min), and both cell pellets
and supernatants were subjected to radioactivity measurements using a
Packard liquid scintillation counter (Packard Instruments, Meriden,
Conn.), according to Pazirandeh and coworkers (29, 30) and
following the suppliers recommendations. For scintillation counting, 1 ml of cell supernatant was added to 15 ml of Ultima Gold (Packard)
scintillation cocktail. The cell pellets were washed (1 M Trizma
base-HCl, pH 7.0) and resuspended in 1 ml of 1 M Trizma base-HCl before
addition of 15 ml of the scintillation cocktail. Figure
4 shows the residual 109Cd
concentrations, expressed as counts per minute, in supernatants of
wild-type S. xylosus (Fig. 4, bar 1), Sx:ABP (Fig. 4, bar
2), and Sx:H2ABP (Fig. 4, bar 3) as well as for wild-type S. carnosus (Fig. 4, bar 4), Sc:ABP (Fig. 4, bar 5), and Sc:H2ABP
(Fig. 4, bar 6) after incubating the bacterial cells with
109Cd. Each supernatant was analyzed as five separate
samples, and the entire experiment was repeated with reproducible
results. The results demonstrate that the recombinant staphylococci
expressing a continuous hexahistidyl peptide at their surface, Sx:H2ABP
(Fig. 4, bar 3) and Sc:H2ABP (Fig. 4, bar 6), had gained a slightly but
significantly improved ability to adsorb Cd2+ ions (P
values, <0.01 and <0.02, respectively) compared with staphylococci
carrying surface proteins with only the ABP moiety, Sx:ABP (Fig. 4, bar
2) and Sc:ABP (Fig. 4, bar 5), respectively. However, the increase in
ability to adsorb Cd2+ ions by introduction of a
hexahistidyl peptide was only moderate compared to the improved
Ni2+ binding, and this is most likely because hexahistidyl
peptides are not optimal for Cd2+ binding. Alternative
peptides should be considered, as discussed below. Staphylococci
carrying the discontinuous polyhistidyl peptide (Sx:H1ABP and
Sc:H1ABP) showed intermediate efficiency for bioadsorption (data
not shown). A similar pattern was found when analyzing the cell
pellets in the liquid scintillation assay, giving the highest residual
Cd concentrations in the pellets of the staphylococci carrying the H2
peptide (Sx:H2ABP and Sc:H2ABP), the lowest values for the wild-type
bacteria, and intermediate Cd concentrations for the Sx:ABP, Sx:H1ABP,
Sc:ABP, and Sc:H1ABP strains (data not shown).

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FIG. 4.
Histogram representation of results from the
Cd2+ bioadsorption assay. Wild-type and recombinant
S. xylosus or S. carnosus cells were incubated
with radioactive 109Cd, and residual radioactivity in the
cell supernatants, monitored by liquid scintillation, corresponds to
the amount of nonadsorbed Cd2+. Each supernatant was
analyzed as five separate samples. Hatched bars indicate
Cd2+ concentrations for S. xylosus cells: wild
type (bar 1), Sx:ABP (bar 2), and Sx:H2ABP (bar 3). Open bars indicate
Cd2+ concentrations for S. carnosus cells: wild
type (bar 4), Sc:ABP (bar 5), and Sc:H2ABP (bar 6). Error bars
represent standard deviations.
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Concluding remarks.
We have demonstrated how two different
polyhistidyl peptides were expressed in a functional form on the
surface of S. xylosus and S. carnosus. SDS-PAGE
analysis of recombinant surface proteins, affinity purified from cell
wall fractions, verified the cell wall localization of the chimeric
proteins, expressed as full-length gene products. Surface
accessibility of the chimeric surface proteins was demonstrated for the
different recombinant staphylococci by a colorimetric assay based
on the ABP. Functionality of the surface-exposed proteins in terms of
metal ion binding was demonstrated, since recombinant S. xylosus and S. carnosus cells had gained improved nickel-binding capacity by the introduction of the H1 or H2 peptide into their surface proteins. The continuous H2 peptide was found to be
significantly better in Ni2+ binding. When evaluating the
staphylococci for the ability to adsorb a divalent heavy metal ion,
Cd2+, only slightly improved Cd2+ binding could
be demonstrated, suggesting that alternative peptides might need to be
investigated in order to generate staphylococci with improved capacity
to sequester Cd2+ ions.
A number of different metal-binding peptides have been described in the
literature, and, recently, approaches based on combinatorial
peptide
libraries have allowed the selection of peptides with
enhanced
specificity for a certain metal, using bacterial (
3,
33) or
phage (
22,
28) display strategies. Bacterial surface
display
of such peptides could potentially generate tailor-made
recombinant
bacteria with specific metal-binding abilities, which
could thus be
envisioned as devices to create selective bioadsorbents
or biosensors.
Peptides which have been demonstrated to bind metals
of significant
environmental concern, such as cadmium (
16),
chromium
(
3), or mercury (
30), would thus be of obvious
interest
for expression in the staphylococcal surface display systems
described
here. Alternatively, the presented staphylococcal surface
display
systems could potentially be used directly for display of
combinatorial
peptide libraries and subsequent selection through
biopanning
of peptides specific for a certain metal ion. Also, other
protein
scaffolds (
5,
15,
20,
25) could, if subjected to
protein
engineering efforts, be envisioned for surface display in order
to create bacteria with the capacity for specific metal
adsorption.
Taken together, we have demonstrated the possibility of displaying
polyhistidyl peptides in a functional form on the surface
of two
strains of staphylococci, as an initial approach to recruiting
surface-engineered gram-positive bacteria for the generation of
metal-binding bioadsorbents to be used in environmental or biosensor
applications. In order to create staphylococci with specific
recognition
of certain metal ions, an ion-specific peptide or protein
needs
to be engineered, for example, by combinatorial library
approaches.
Nevertheless, this first successful study of how
metal-binding
peptides have been expressed by recombinant means as
surface exposed
on food-grade nonpathogenic staphylococci constitutes
an important
step in this
development.
 |
ACKNOWLEDGMENTS |
We are grateful to Rikard Erlandsson, Mathias Uhlén, Johan
Håkans, Lars-Göran Danielsson, and Per-Åke Nygren for valuable discussions.
This work was financially supported in part by the Swedish National
Board for Technical and Industrial Development (NUTEK) and in part by
the program Cell Factory for Functional Genomics within the Swedish
Foundation for Strategic Research.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Biotechnology, Kungliga Tekniska Högskolan, S-100 44 Stockholm,
Sweden. Phone: 46 8 790 6497. Fax: 46 8 245452. E-mail:
stefans{at}biochem.kth.se.
 |
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Applied and Environmental Microbiology, March 2000, p. 1243-1248, Vol. 66, No. 3
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Copyright © 2000, American Society for Microbiology. All rights reserved.
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