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Applied and Environmental Microbiology, May 2000, p. 2045-2051, Vol. 66, No. 5
0099-2240/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
In Vitro ATP Regeneration from Polyphosphate
and AMP by Polyphosphate:AMP Phosphotransferase and Adenylate
Kinase from Acinetobacter johnsonii 210A
Sol M.
Resnick* and
Alexander J. B.
Zehnder
Microbiology Department, Swiss Federal
Institute for Environmental Science and Technology (EAWAG), and
Swiss Federal Institute of Technology (ETH), CH-8600 Duebendorf,
Switzerland
Received 6 January 2000/Accepted 9 March 2000
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ABSTRACT |
In vitro enzyme-based ATP regeneration systems are important for
improving yields of ATP-dependent enzymatic reactions for preparative
organic synthesis and biocatalysis. Several enzymatic ATP regeneration
systems have been described but have some disadvantages. We report here
on the use of polyphosphate:AMP phosphotransferase (PPT) from
Acinetobacter johnsonii strain 210A in an ATP regeneration system based on the use of polyphosphate (polyP) and AMP as substrates. We have examined the substrate specificity of PPT and demonstrated ATP
regeneration from AMP and polyP using firefly luciferase and hexokinase
as model ATP-requiring enzymes. PPT catalyzes the reaction polyPn + AMP
ADP + polyPn
1. The ADP can be
converted to ATP by adenylate kinase (AdK). Substrate specificity with nucleoside and 2'-deoxynucleoside monophosphates was examined using partially purified PPT by measuring the formation of nucleoside diphosphates with high-pressure liquid chromatography. AMP and 2'-dAMP
were efficiently phosphorylated to ADP and 2'-dADP, respectively. GMP,
UMP, CMP, and IMP were not converted to the corresponding diphosphates
at significant rates. Sufficient AdK and PPT activity in A. johnsonii 210A cell extract allowed demonstration of
polyP-dependent ATP regeneration using a firefly luciferase-based
ATP assay. Bioluminescence from the luciferase reaction, which normally
decays very rapidly, was sustained in the presence of A. johnsonii 210A cell extract, MgCl2,
polyPn=35, and AMP. Similar reaction mixtures containing strain 210A cell extract or partially purified PPT, polyP,
AMP, glucose, and hexokinase formed glucose 6-phosphate. The results
indicate that PPT from A. johnsonii is specific for AMP and
2'-dAMP and catalyzes a key reaction in the cell-free regeneration of
ATP from AMP and polyP. The PPT/AdK system provides an alternative to
existing enzymatic ATP regeneration systems in which
phosphoenolpyruvate and acetylphosphate serve as phosphoryl donors and
has the advantage that AMP and polyP are stabile, inexpensive substrates.
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INTRODUCTION |
Enzyme-catalyzed phosphoryl transfer
reactions (i.e., those which form or cleave P
O bonds) represent a
viable alternative to multistep chemical phosphorylations in
preparative organic synthesis (7, 10, 20). Many useful
phosphorylating enzymes require nucleoside triphosphates as cofactors.
ATP is the most important biological phosphate donor and is a required
cofactor for numerous enzymatic reactions in both anabolic and
catabolic metabolism, specifically in the formation of P
O bonds.
Cofactor provision for ATP-dependent enzymes can be accomplished by
their direct addition in stoichiometric amounts or by the inclusion of
a cofactor regeneration system. Direct cofactor addition is not only
costly but can unfavorably alter reaction equilibrium, lead to an
accumulation of inhibitory cofactor by-products, and complicate
recovery of end products (20). For preparative-scale organic
synthesis, these problems have been overcome by the development of enzymatic systems for ATP regeneration.
Whitesides et al. and others have described several enzymatic systems
for the regeneration of ATP from ADP (4). The two most
common systems are based on acetyl phosphate/acetate kinase (AcP/AcK) and phosphoenolpyruvate/pyruvate kinase (PEP/PK). Both systems involve the transfer of a phosphoryl group from a high-energy donor to ADP but have characteristics (discussed later) that favor particular applications. Both AcK and PK have broad substrate specificities, allowing the regeneration of other nucleoside or 2'-deoxynucleoside triphosphates (i.e., GTP, UTP, CTP, and 2'-dATP) (20). Disadvantages of both systems relate to the stability, expense, or requisite chemical syntheses (for large-scale application) of the high-energy phosphoryl donors and product inhibition, in the
case of PK, by pyruvate. Despite minor drawbacks, these enzymatic ATP
regeneration systems have facilitated the study of numerous kinase and
synthetase reactions and led to improved chemoenzymatic synthesis of
valuable phosphorylated compounds (5, 6, 9, 11, 12, 19, 21).
ATP regeneration from ADP using polyphosphate/polyphosphate
kinase (polyP/PPK) has also been demonstrated (13) and was
recently applied in a practical synthesis of the oligosaccharide,
N-acetyllactosamine (14). The latter work showed
PPK from Escherichia coli to phosphorylate not only ADP but
also other nucleoside diphosphates to their corresponding triphosphates using polyP as a phosphoryl donor. Although PPK is
not yet commercially available, the low cost of production and high
stability of polyP make it an attractive alternative to the phosphoryl
donors in the systems mentioned above (3).
While each system described above recycles ATP from ADP, many
ATP-dependent enzymes generate AMP rather than ADP and some produce
adenine. The regeneration of ATP from AMP can be achieved by including
adenylate kinase (AdK), while ATP regeneration from adenosine
requires inclusion of both adenosine kinase and AdK in the above
regenration systems (7, 11). Thus, efficient systems
for the enzymatic regeneration of ATP from AMP could benefit these scenarios. The focus of the present work was to examine the
potential of polyphosphate:AMP phosphotransferase (PPT) from Acinetobacter johnsonii strain 210A (1) for in
vitro ATP regeneration from polyP and AMP (16). PPT
catalyzes the reaction polyPn + AMP
ADP + polyPn
1, and the ADP can be converted
to ATP by AdK (or PPK) (Fig. 1).
The substrate specificity of PPT with other nucleoside and
2'-deoxynucleoside monophosphates was determined with partially
purified preparations and the ability of PPT/AdK to regenerate ATP from
AMP using polyP as a phosphoryl donor was demonstrated with luciferase
and hexokinase as model ATP-dependent enzymes.

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FIG. 1.
General scheme showing enzymatic ATP regeneration from
AMP and polyP by the PPT/AdK system. Note that AMP released by certain
ATP-dependent enzymes requires the activity of both PPT and AdK to
regenerate ATP.
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MATERIALS AND METHODS |
Strain cultivation and fermentation conditions.
A.
johnsonii strain 210A was grown in the basic medium with trace
metals (BM) described by van Groenestijn (17) with 5.67 g of sodium acetate trihydrate per liter as a carbon source. Sufficient biomass for initial studies was obtained by culturing strain 210A in
batch mode in a 30-liter fermentor vessel containing 25 liters of BM
with butyrate (2.29 g of butyric acid per liter [adjusted to pH 7.0])
and inoculated (3% vol/vol) with an acetate-grown preculture. The
culture was grown at 25°C with agitation at 230 rpm, 15 liters of
air/min (pH 7.0), and a maintained pO2 of >80%. After
22 h of growth, the culture was cooled (10°C), stirred at 120 rpm with 10 liters of air/min, and harvested by centrifugation to give
a 120-g wet-cell weight. In order to identify carbon sources which lead
to both high cell yields and PPT activity, strain 210A was grown in
200-ml batch cultures (30°C, 200 rpm) on BM containing 20 mM acetate,
crotonate, or DL-lactate. Cells were also grown in complex
Luria-Bertani (LB) medium alone and LB medium supplemented with 40 mM
DL-lactate or 0.8 g of potassium phosphate per liter. Large-scale cultivation of strain 210A was in a 1-m3
fermentor containing 700 liters of BM with 75 mM DL-lactate
(pH 7.2) and inoculation with a 24-liter preculture grown for 22 h. The culture was grown at 25°C with agitation at 100 to 150 rpm for
15 h (A546 = 11.2), cooled to 18°C,
and harvested using a Sharples continuous centrifuge. The final cell
yield was approximately 11.5 g (wet weight) per liter. Culture
purity was assessed by plating to rich (LB) medium and by microscopic
examination at each stage of fermentation. Cells were frozen at
80°C until use.
Preparation of cell extracts and a PPT active fraction.
Strain 210A cells were suspended 1:1 (wt/vol) in breakage buffer (50 mM
Tris-HCl, 4 mM EDTA, pH 6.8) containing 0.5 mM Perfabloc (AEBSF;
Boehringer Mannheim) and DNase I (Fluka Chemie AG) at 50 µg/ml. Cells
were disrupted by passage of the suspension twice through a chilled
French pressure cell at 20,000 lb/in2. The cell homogenate
was centrifuged at 18,000 × g for 1 h to remove
cell debris, and the resulting crude extract was either frozen at
70°C or immediately ultracentrifuged at 150,000 × g (4°C, 1.5 h). The soluble fraction, designated the
high-speed supernatant (HSS), was further fractionated. Ammonium
sulfate (AS) precipitation was done by addition of a saturated solution and/or finely ground solid crystalline material to the HSS with stirring on a 4°C ice bath. AS cuts were made at 30, 40, 50, 60, and
75% saturation (percentages assume additive volume), and precipitates were resuspended in 0.5 volume of 0.05 M Tris-HCl (pH 7.5). These solutions were used directly in the experiments described here or
concentrated and desalted using a stirred ultrafiltration cell equipped
with a YM30 regenerated-cellulose membrane (Amicon bioseparations; Millipore Corp., Bedford, Mass.).
Assays.
PPT was measured spectrophotometrically essentially
as described by Bonting et al. (method A) (1), except that
the assay buffer was 50 mM Tris-HCl (pH 7.6). The 1.0-ml assay mixtures contained 8 mM MgCl2, 5 mM glucose, 0.4 mM
NADP+, 2 U of yeast hexokinase (HK), 1 U of glucose
6-phosphate (G6P) dehydrogenase, 1 U of AdK, 0.2 mg of
polyPn = 35, and 1 mM AMP (added to
initiate the reaction). The reduction of NADP+ by G6P
dehydrogenase was monitored at 340 nm (Jasco V-550) at room temperature
(22 ± 2°C). As noted previously, the initial rate of
NADP+ reduction in this coupled-enzyme assay is nonlinear
and usually required at least 5 min to reach linear rates corresponding
to ADP formation (16). Since the assay required 0.5 to 1.0 mg of crude cell extract protein for measurable activity,
more-sensitive luciferase-based assays of PPT activity were also used
to monitor enzyme activity in a microtiter plate (MTP) format.
PPT activity was measured by two methods with firefly luciferase-based
ATP Bioluminescence Assays (CLSII and HSII Kits; Boehringer
Mannheim)
following enzymatic conversion of ADP to ATP. In the
first method
(assay 1), 1.0-ml reaction mixtures contained, in
50 mM Tris-HCl (pH
7.6), 3 mM MgCl
2, 0.2 mg of polyP
n = 35,
cell extract, and 2 mM AMP (added to initiate the reaction).
The
mixtures were incubated at room temperature, and at predetermined
time intervals (10 to 30 min), subsamples (typically 50 µl) were
added to 5 ml of breakage buffer and boiled for 5 min. These solutions
were treated with 2 mM PEP and 1 U of PK per ml for 30 min at
35°C.
The concentration of ATP, which is directly proportional
to the
amount of ADP formed by PPT, was measured in MTP wells
containing 50 µl each of assay sample (or ATP standard) and CLSII
luciferase
reagent using a MicroLumat LB-96P Luminometer (EG&G
Berthold).
The second method (assay 2) was developed to minimize sample
manipulation steps, increase sensitivity, and provide a rapid
in vitro
assay of ATP regeneration activity in real time. This
method takes
advantage of the natural decay kinetics of bioluminescence
in the HSII
ATP Assay Kit (1 and 10 µM ATP standards show >97%
and >93%
relative light unit [RLU] decay by 30 min). Complete
reaction
mixtures (0.1 ml) were set up on ice and contained MgCl
2,
polyP
n = 35, and AMP in Tris-HCl (pH 7.6)
at
the concentrations listed for assay 1 and AdK at 1 U/ml. Activity
was measured immediately in MTP wells as described above, except
that
the HSII ATP Assay Kit luciferase reagent was used. Assay
constituents
were systematically eliminated or serially diluted
to experimentally
determine required
components.
To determine whether AdK or PPK is responsible for converting ADP to
ATP in strain 210A, 0.1-ml reaction mixtures were set
up with ADP as
the substrate using strain 210A crude cell extract,
the HSS, and the AS
50% cut and containing the concentrations
of
polyP
n = 35, MgCl
2, and
Tris-HCl listed
for assay 1. Reactions were set up with and without
polyP to assess
the contributions of AdK and PPK (polyP dependent) to
the formation
of ATP, which was measured over a 3-h period using the
HSII ATP
Assay Kit luciferase
reagent.
Protein concentrations were estimated by the method of Bradford
(
2), using protein dye reagent from Bio-Rad, and are
relative
to the standard, bovine serum
albumin.
HK coupled to the PPT/AdK system for ATP regeneration.
HK
reaction mixtures with crude cell extract contained the following
components (where indicated; see Table 3) in a final volume of 1.0 ml:
2 U of yeast HK, 50 mM glucose, 3 mM MgCl2, 5 mM AMP or
ATP, 0.5 mg of polyPn = 35, 1 U of AdK, and
84 mU of PPT in 50 mM Tris-HCl (pH 7.5). Rates of G6P formation were
measured in 1.0-ml reaction mixtures containing 5 U of HK, 6 mM
MgCl2, 100 mM glucose, 1 U of AdK, 1 mg of
polyPn = 35, 5 mM AMP, and different
concentrations of PPT from a 40 to 60% AS cut (concentrated by
ultrafiltration; 13.6 mg of protein/ml) in 50 mM Tris-HCl (pH 7.5). In
control reaction mixtures the AMP, polyP, and PPT were omitted and 5 mM
ATP was provided with and without AdK. Reaction mixtures were incubated
at 30°C with horizontal shaking (175 rpm). At predetermined
intervals, aliquots of the reaction mixtures were boiled for 5 min to
inactivate enzymes and centrifuged for 10 min (14,000 rpm, Microfuge)
and the supernatants were retained for G6P analysis. G6P concentrations
were measured by monitoring the G6P dehydrogenase-coupled reduction
endpoint of NADP+ at 340 nm with a UV/Vis
spectrophotometer. The 1.0-ml assay mixtures contained 6 mM
MgCl2, 40 mM NADP+, and 0.5 U of G6P
dehydrogenase in Tris-HCl (pH 7.6).
Substrate specificity.
The ability of PPT to phosphorylate
AMP and several related nucleoside phosphates was examined in reaction
mixtures (1.0 ml) containing in Tris-HCl (pH 7.6), 3 mM
MgCl2, 0.4 mg of polyPn = 35, 0.5 mM nucleoside monophosphate (AMP, 2'-dAMP, GMP, CMP, UMP, and IMP),
and 0.23 mg of protein from a 40 to 50% AS cut with PPT activity.
Reactions were also conducted with 1.0 mM AMP and 2'-dAMP. At
predetermined intervals, 0.1-ml subsamples were boiled for 5 min,
diluted 1:10 in the high-pressure liquid chromatography (HPLC) mobile
phase, and filtered (0.45-µm pore size). Sample analysis was
performed on a Gynkotek HPLC system (M480G pump, Gina 50T autosampler,
and UVD340S photodiode array detector; Gynkotek GmbH) equipped with a
Nucleosil 100-5 C18 column (250 by 4.6 mm [inside
diameter]; Macherey-Nagel). An isocratic mobile phase of 0.08 M sodium
dihydrogen phosphate in methanol (77:23, vol/vol) with 5 mM
tetrabutylammonium hydrogen sulfate (pH 6.0) operated at a flow rate of
0.7 ml/min, and compounds were detected at 260 nm. Under these
conditions, the retention times of the nucleoside mono-, di-, or
triphosphates were as follows: AMP, ADP, and ATP, 5.5, 7.2, and 10.4 min; 2'-dAMP, 2'-dADP, and 2'-dATP, 6.5, 8.9, and 12.3 min; GMP and
GDP, 4.4 and 5.6 min; CMP and CDP, 4.2 and 5.3 min; IMP and IDP, 4.4 and 5.5 min; UMP and UDP, 4.4 and 5.7 min. Concentrations of analytes
were determined from standard curves prepared using authentic compounds.
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RESULTS |
Expression of PPT.
To determine suitable conditions for
large-scale cultivation of strain 210A and expression of PPT, the
specific activity in crude cell extracts was measured using the
spectrophotometric assay after growth on different substrates (200-ml
scale). The specific activity of PPT in cells cultivated on butyrate
was 68 nmol/min/mg of protein, which agreed well with the activity
reported previously for butyrate-grown cells of strain 210A
(1). Almost identical PPT activities were observed in cells
grown on crotonate, acetate, DL-lactate, and LB medium
(Table 1). The activity of PPT was
stable, as no difference was observed in LB medium-grown cultures
assayed at 19 and 31 h. The determination of conditions allowing
both high cell yield and PPT activity facilitated studies demonstrating
the utility of PPT as a functional biocatalyst for ATP-recycling
systems and for direct phosphorylation reactions.
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TABLE 1.
Expression of polyP:AMP phosphotransferase in crude
cell extracts prepared from A. johnsonii sp. 210A grown
on different media
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Regeneration of ATP by PPT/AdK.
ATP regeneration was initially
demonstrated using strain 210A cell extract and a commercially
available firefly luciferase-based ATP assay (HSII Kit; Boehringer
Mannheim). Figure 2A shows that bioluminescence, which normally decays very rapidly with ATP standards (>90% RLU decay by 30 min), could be sustained in the presence of
cell extract, MgCl2, AdK, polyP, and AMP (complete
reaction mixture components). Reaction mixtures in which AdK was
omitted also showed high levels of sustained bioluminescence,
indicating that cell extracts were not limited for AdK activity.
Reduced levels of bioluminescence were observed when AMP was omitted, and complete reaction mixtures lacking polyP showed no bioluminescence (Fig. 2A). In the latter case, high levels of sustained luciferase activity were observed immediately following polyP addition at 30 min
(Fig. 2B) and demonstrate the polyP-dependent nature of the PPT-based
ATP regeneration system. Luciferase activity in complete reaction
mixtures was sustained for >24 h (data not shown).

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FIG. 2.
Regeneration of ATP from polyP and AMP as demonstrated
by sustained bioluminescence from firefly luciferase (assay 2). (A)
Effect of assay constituents on ATP regeneration activity. Complete
reaction mixtures contained the following, except where otherwise
indicated: cell extract protein at 0.5 mg/ml, 3 mM
MgCl2, AdK at 1 U/ml, polyP at 0.2 g/liter, and 2 mM
AMP. Symbols: , 1.0 µM ATP; , 10 µM ATP; , complete
reaction mixture; , complete reaction mixture without AMP; ,
complete reaction mixture without AdK; ×, complete reaction mixture
without polyP. (B) Demonstration of the polyP requirement for ATP
regeneration (assay constituents as defined for panel A). Symbols: ,
10 µM ATP; , complete reaction mixture; , complete reaction
mixture without polyP; , complete reaction mixture without
polyP but with polyP at 0.2 g/liter added at 30 min.
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AS precipitation.
AS precipitation was an effective method for
the concentration and recovery of PPT activity from the
150,000 × g HSS. Recovery of PPT activity and protein
in a typical AS precipitation series is shown in Table
2. Based on activity, PPT in the HSS was
recovered in the 50% AS cut with a purification factor of 2 to 5. The
most reproducible precipitation of PPT was achieved when a saturated AS
solution was used to make cuts of up to 60%. When the procedure was
scaled to volumes greater than 100 ml, PPT activity was distributed in
approximately equal amounts in both the 40 to 50% and 50 to 60% AS
cuts (data not shown).
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TABLE 2.
Protein and polyP:AMP phosphotransferase activity
distribution following AS precipitation of strain 210A HSS
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Involvement of AdK or PPK in ATP formation.
To distinguish
between AdK- and PPK-catalyzed formation of ATP, reactions were set up
containing various strain 210A preparations of cell extract (crude,
HSS, 50% AS cut) and ADP, with and without polyPn = 35. Initial rates of luciferase activity, measured as
bioluminescence within 10 min, indicated only slightly higher levels of
ATP formed in the presence of polyP (results not shown). However, by
105 min, the magnitude of bioluminescence (RLU) and the decay rate of
luciferase activity were identical for reaction mixtures with and
without polyP, suggesting that the formation of ATP from ADP was polyP
independent and catalyzed by AdK.
Substrate specificity.
The potential of PPT to phosphorylate
other nucleoside monophosphate substrates was examined using the
40 to 50% AS cut and measuring the formation of nucleoside di-
and triphosphates by ion pair reverse-phase C18 HPLC with
UV detection at 260 nm. Reaction mixtures containing PPT activity from
the 40 to 50% AS cut (0.23 mg of protein/ml) efficiently converted 0.5 mM AMP to ADP (and ATP by AdK activity present in the preparation)
but failed to phosphorylate CMP, UMP, or IMP (Fig.
3). Under identical conditions, GMP and
2'-dAMP were converted to GDP and 2'-dADP, respectively. The rate of
GMP phosphorylation was 4% of that measured for AMP. The
specific activity of PPT in these reaction mixtures (based on AMP
depletion) was 76 nmol/min/mg.

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FIG. 3.
Substrate specificity of PPT. Reaction mixtures
contained different nucleoside monophosphates (AMP, 2'-dAMP, GMP, CMP,
UMP, and IMP) and were incubated with the 50% AS cut (0.23 mg of
protein per ml; see Materials and Methods). The formation of the
corresponding nucleoside di- and triphosphates was monitored by HPLC.
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The kinetics of AMP and 2'-dAMP phosphorylation were examined in
reaction mixtures containing a 40 to 50% AS cut and a 1.0
mM
nucleotide substrate. AMP was rapidly phosphorylated to ADP,
which
underwent subsequent phosphorylation to ATP by the action
of the AdK in
the same preparation (Fig.
4A). ATP
levels continued
to rise (0.5 mM at 120 min) until AMP was
depleted and equilibrium
between ADP and ATP was established
(
16). Under the same conditions,
2'-dAMP was phosphorylated
to 2'-dADP at 46% of the initial rate
measured for AMP phosphorylation
(Fig.
4B). Unlike ADP, however,
2'-dADP was not rapidly phosphorylated
to dATP, suggesting that
2'-dADP is a relatively poor substrate
for AdK (Fig.
4B). This
appears to contradict a previous report of
2'-dADP phosphorylation
by AdK (or PK) (
12).

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FIG. 4.
Course of AMP (A) and 2'-dAMP (B) conversion to the
corresponding nucleoside diphosphates ( ) and triphosphates ( ) by
the PPT/AdK system. Reaction mixtures were as described in the legend
to Fig. 3 but contained 1.0 mM substrate and 0.46 mg of protein of a
50% AS cut per ml.
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HK reactions with ATP formed via PPT/AdK.
The applicability of
the PPT/AdK system for biocatalysis was shown using strain 210A cell
extract with HK as a model ATP-requiring enzyme. G6P was measured in
reaction mixtures containing ATP or cell extract, polyP, and AMP.
Results demonstrated G6P formation by HK with ATP provided from polyP
and AMP by PPT/AdK (Table 3, reaction 2).
Identical reaction mixtures lacking added AdK indicated that sufficient
AdK activity was present in the cell extract to allow ATP recycling.
Elevated G6P could be achieved by adding AdK to facilitate regeneration
of added ATP (Table 3, reaction 4). Generation of ATP from AMP was
shown to be polyP dependent, since only very low concentrations of G6P
were detected when polyP was omitted (Table 3, reaction 5). HK was also
used to examine ATP regeneration from polyP and 5 mM AMP with
different concentrations of PPT protein activity precipitating
between 40 and 60% AS saturation. In reaction mixtures
containing 1.36 mg of protein per ml, the formation of over 16 mM
G6P represented a threefold product excess relative to the added AMP
concentration (Fig. 5). Plotting of the
initial rates of G6P formation versus protein concentration results in
a linear relationship (data not shown) and a calculated product
formation rate of 164 nmol of G6P/min/mg of protein. While G6P
formation was more rapid in the control reaction mixtures provided with
5 mM ATP, product formation was stoichiometric in both the absence and
the presence of AdK, where final measured G6P concentrations were about
5 and 8 mM, respectively (Fig. 5).
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TABLE 3.
HK-catalyzed formation of G6P with and without ATP
regeneration by PPT/AdK from strain 210A cell extract
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FIG. 5.
HK-catalyzed formation of G6P in reaction mixtures with
ATP supplied from 5 mM AMP and polyPn = 35
using AdK with different amounts of PPT protein. PPT concentrations,
represented as total protein from a 40 to 60% AS cut, are 1.36 ( ),
0.68 ( ), 0.34 ( ), and 0.136 ( ) mg/ml. Control reaction
mixtures contained 5 mM ATP (dashed lines) with ( ) and without ( )
AdK.
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DISCUSSION |
The results of the present study provide information on the
expression and substrate specificity of PPT and its potential application for the regeneration of ATP from AMP and polyP. Work conducted with crude extracts and partially purified preparations demonstrated the ability of PPT, when coupled with AdK, to
regenerate ATP and sustain activities of the ATP-requiring
enzymes luciferase and HK. The main advantage of using PPT with a
kinase such as AdK (or PPK) is the ability to use AMP as the initial
acceptor and polyP as the phosphoryl donor. Both substrates for the
system are stable, commercially available, and at least 10-fold less expensive than corresponding substrates of systems based on PEP/PK or
AcP/AcK. The reaction catalyzed by PPT is unidirectional and has an
apparent half-saturation (Km) value of 0.26 mM
for AMP (1), which is within the range of
Km values for ADP measured with PK and AcK (see
below). The Km of 0.8 µM for polyP suggests that the phosphoryl donor is tightly bound to PPT and efficiently used
until it is completely degraded (1).
The PEP/PK system is considered the most efficient
enzymatic ATP regeneration system when a strong, stable
phosphorylating agent is required. The stability of PEP
(half-life, 1,000 h at 25°C, pH 7) and its strength as a
phosphoryl donor make it suitable for slow and thermodynamically
unfavorable phosphorylation reactions (4). PK has a
half-saturation constant (Km) for ADP of 0.1 mM,
which is smaller than that of AcK (Km [MgADP] = 0.4 mM) and allows ATP regeneration at low concentrations of ADP. The
AcP/AcK system is widely used for large-scale ATP regeneration, since AcP can be prepared relatively easily (20). Although AcP is a weaker phosphoryl donor than PEP, the major drawback is its relative
instability in solution (half-life, 21 h at 25°C, pH 7)
(4). Thus, an ATP regeneration system based on PPT and
adenylate (or polyP) kinase is attractive since it uses polyP and AMP
as the initial, stable, low-cost substrates.
Physiological-expression studies using cell extracts prepared after
batch growth of strain 210A on different carbon sources showed that the
specific activity of PPT was in the range of 60 to 70 nmol/min/mg.
These activity levels are consistent with those reported previously for
butyrate-grown batch cultures (1) and slightly higher than
the activities reported for strain 210A under continuous-culture
conditions (15). The results indicating that PPT activity in
strain 210A was unchanged when it was batch cultured on carbon sources
supporting different specific growth rates are in contrast to the
finding that PPT activity is inversely related to growth rate under
continuous-culture conditions (15). The finding that
DL-lactate allowed a high growth rate and expression of PPT
led to its selection as the carbon source for large-scale cultivation
of strain 210A. The use of DL-lactate also eliminated the
odor emission associated with butyrate. On the basis of the conditions
examined, the results suggest that PPT activity in strain 210A was not
inducible to levels higher than those previously measured and that it
was independent of growth rate in batch culture.
In vitro ATP regeneration from AMP and polyP was initially demonstrated
using strain 210A cell extracts and a firefly luciferase ATP assay.
Results showed that bioluminescence from the luciferase reaction, which
normally decays within 30 min for ATP standards (Fig. 2A), could be
sustained for more than 24 h in the presence of strain 210A cell
extract, MgCl2, polyP, and AMP. Sufficient AdK activity was
present in the cell extract to convert ADP to ATP. Since firefly
luciferase releases AMP from ATP, this assay was able to demonstrate
the application of the PPT/AdK system for the regeneration of ATP
exclusively through AMP.
Recent studies using acetate-limited chemostat cultures of A. johnsonii 210A suggested the involvement of PPK in polyP synthesis (18). Therefore, the possibility was considered that PPK
functioning in the reverse direction could be responsible for the
conversion of ADP to ATP in our studies. Assays to delineate the
involvement of AdK or PPK in the formation of ATP indicated that ATP
levels produced in the presence of polyP were only slightly higher than those produced without polyP, a result that is likely due to the PPT
recycling the AMP released by luciferase. The finding that ATP
formation from ADP was not polyP dependent indicated that AdK catalyzed
the conversion of ADP to ATP in strain 210A cell-free preparations
(Fig. 1). Unamended polyP levels in these preparations did not support
PPT activity with AMP as the phosphoryl acceptor.
AS precipitation provided a scalable step for enrichment of PPT from
the 150,000 × g HSS and can be followed by other
chromatographic methods. PPT activity from Corynebacterium
xerosis was similarly recovered between 45 and 75% AS saturation
in a partial purification described previously (8).
Streptomycin sulfate has been used to precipitate PPT from crude cell
extracts with high efficiency (1); however, the procedure is
dependent on the polyP concentration of the cell extract and is not
easily scaled up. The protein precipitating between 40 and 60% AS
saturation reproducibly provided an active PPT fraction suitable for
substrate specificity and ATP regeneration studies.
Analysis of PPT substrate specificity showed that AMP and 2'-dAMP were
the only nucleoside monophosphates accepted for efficient phosphorylation. GMP was also phosphorylated but at much slower rates
(Fig. 3). Relative to that of AMP, the rates of PPT-catalyzed phosphorylation of GMP and 2'-dAMP were 4 and 46%, respectively. Our
results obtained with ribonucleoside monophosphates are consistent with
those reported for a 60-fold-purified preparation of PPT from C. xerosis which also failed to phosphorylate GMP, UMP, CMP, and IMP
(8). The relatively restricted substrate spectrum for PPT
contrasts with that of PPK from E. coli, which accepts ADP, GDP, CDP, and UDP as substrates with kination (phosphorylation) efficiencies ranging from 31 to 52% (14). The substrate
specificity assay results suggest that use of PPT will be restricted to
regeneration of ATP and not other nucleoside phosphates. However, the
finding that PPT phosphorylates 2'-dAMP to 2'-dADP suggests potential utility in the enzymatic preparation of 2'-dADP or 2'-dATP
(12).
HK catalyzed the formation of G6P and was used to demonstrate the
applicability of the PPT/AdK system for ATP regeneration from polyP and
AMP (Table 3 and Fig. 5). HK converts ATP to ADP, which can be recycled
by AdK to ATP and AMP. The continuously formed AMP can be converted to
ADP by PPT, preventing buildup of AMP and completing the
cofactor-recycling process. HK has been used as a model ATP-requiring
biocatalyst to demonstrate the utility of other ATP regeneration
systems (13), some of which have enabled studies of its
versatility (9). Reactions conducted with partially purified
preparations of PPT (40 to 60% AS cut) formed G6P at a rate of 164 nmol/min/mg (Fig. 5), which appears to be a productivity similar to
that of the polyP/PPK system for ATP regeneration from ADP
(13). The utility of the PPT-based ATP regeneration system is apparent from the higher maximum G6P yields compared to
ATP-containing control reaction mixtures (Fig. 5). Since the PPT
preparation contained ammonium ions, which can sequester magnesium ions
from solution (7), partial inhibition of HK, adenylate
kinase, or PPT itself cannot be ruled out.
In conclusion, PPT appears to be a promising biocatalyst, when coupled
with AdK activity, for the regeneration of ATP from AMP and polyP. The
restricted substrate specificity of PPT indicates that its use for
cofactor recycling, when coupled with AdK, may be limited to ATP
(regeneration). The identification of 2'-dAMP as a substrate suggests
the potential utility of PPT as a biocatalyst for direct
phosphorylation reactions. The use of PPT/AdK to supply energy for
luciferase and HK activities demonstrated the ability to recycle
AMP through ADP to ATP. For both activities, ATP regeneration was
strictly dependent on polyP as the phosphoryl donor. The present work provides a basis for the development of PPT as a functional biocatalyst for direct phosphorylation reactions and use in ATP regeneration to enhance the productivity of biotechnologically relevant
ATP-requiring enzymes. Purification of the protein and cloning of the
corresponding gene are the necessary steps for complete
characterization of this interesting enzyme.
 |
ACKNOWLEDGMENTS |
This work was supported in part by a grant from the Swiss
National Science Foundation (Swiss Priority Program in Biotechnology, project 5002-46093).
We thank Andreas Schmid and Hans-Juergen Feiten for assistance with
cultivation and harvesting of strain 210A on a 700-liter scale; Roland
Wohlgemuth (Fluka Chemie, AG) for providing several nucleotides; A. Schmid, R. Wohlgemuth, and Hans-Peter Kohler for helpful
discussions; and Paolo Landini for critical reading of the manuscript.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: The Dow Chemical
Company, 5501 Oberlin Dr., San Diego, CA 92121. Phone: (858) 352-4410. Fax: (858) 352-4450. E-mail: smresnick{at}dow.com.
 |
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Applied and Environmental Microbiology, May 2000, p. 2045-2051, Vol. 66, No. 5
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