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Applied and Environmental Microbiology, June 2000, p. 2565-2571, Vol. 66, No. 6
0099-2240/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Biosynthesis of the Lantibiotic Mersacidin:
Organization of a Type B Lantibiotic Gene Cluster
Karsten
Altena,
André
Guder,
Claudia
Cramer, and
Gabriele
Bierbaum*
Institut für Medizinische Mikrobiologie
und Immunologie der Universität Bonn, D-53105 Bonn, Germany
Received 29 November 1999/Accepted 4 April 2000
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ABSTRACT |
The biosynthetic gene cluster (12.3 kb) of mersacidin, a
lanthionine-containing antimicrobial peptide, is located on the
chromosome of the producer, Bacillus sp. strain HIL
Y-85,54728 in a region that corresponds to 348° on the chromosome of
Bacillus subtilis 168. It consists of 10 open reading
frames and contains, in addition to the previously described mersacidin
structural gene mrsA (G. Bierbaum, H. Brötz, K.-P.
Koller, and H.-G. Sahl, FEMS Microbiol. Lett. 127:121-126, 1995), two
genes, mrsM and mrsD, coding for enzymes
involved in posttranslational modification of the prepeptide; one gene,
mrsT, coding for a transporter with an associated protease domain; and three genes, mrsF, mrsG, and
mrsE, encoding a group B ABC transporter that could be
involved in producer self-protection. Additionally, three regulatory
genes are part of the gene cluster, i.e., mrsR2 and
mrsK2, which encode a two-component regulatory system which
seems to be necessary for the transcription of the mrsFGE
operon, and mrsR1, which encodes a protein with similarity to response regulators. Transcription of mrsA sets in at
early stationary phase (between 8 and 16 h of culture).
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INTRODUCTION |
Mersacidin is a tetracyclic peptide
that is produced by Bacillus sp. strain HIL Y-85,54728
(9). It belongs to the family of lantibiotics, a group of
lanthionine-containing peptides with antimicrobial activity
(46). On the basis of differences in their structures, two
types of lantibiotics have been distinguished, type A and type B
lantibiotics (20). Mersacidin, actagardine, and the
lantibiotics of the cinnamycin type constitute the latter group, which
comprises rigid globular peptides with no net charge or a net negative
charge. In contrast, type A lantibiotics are flexible, elongated
peptides that act by forming pores in the bacterial membrane. Besides
lanthionine, lantibiotics contain a number of rare amino acids, such as
didehydroalanine, didehydrobutyrine, methyllanthionine,
S-aminovinylcysteine, etc. In contrast to classical peptide
antibiotics, lantibiotics are synthesized from precursor genes using
the ribosomal pathway and the rare amino acids are introduced by
posttranslational modification procedures into the lantibiotic
precursor peptides. These so-called prepeptides consist of an
N-terminal leader sequence and the C-terminal propeptide domain that is
modified to be the lantibiotic. Several gene clusters of type A
lantibiotics have been studied so far and found to comprise the
structural gene, the enzymes that catalyze the modification reactions
and accessory factors that confer export from the cell, regulation, and
producer self-protection or immunity, a specific mechanism that
protects the producing strain against the bactericidal action of its
own lantibiotic (for recent reviews, see references 19 and 42). These gene clusters
can be subdivided into two groups. The gene clusters of the strongly
basic peptides, which possess a leader peptide with a conserved FNLD
motif, contain two modification enzymes, LanB and LanC, involved in
dehydration of hydroxy amino acids and thioether formation,
respectively (42). (Lan is used as a collective locus symbol
when homologous genes of different lantibiotic gene clusters are
referred to.) These gene clusters also contain a LanT transporter and
usually a separate LanP that acts as a leader peptidase. In contrast,
the gene clusters of those peptides that carry no net charge or a
single positive charge and are characterized by a leader peptide with a
conserved double glycine cleavage site (GG-type leader peptide) possess a single LanM enzyme which is supposed to catalyze dehydration, as well
as thioether formation, and a LanT transporter with an associated
protease activity (42).
With respect to chemotherapeutic application, mersacidin is the most
promising member of the type B lantibiotics, due to its in vivo
activity against methicillin-resistant Staphylococcus aureus
(8). Like vancomycin, mersacidin acts by binding to lipid
II, the ultimate peptidoglycan precursor, but its target is different
from that of vancomycin, making mersacidin a lead structure of a new
class of antibiotics (5, 7).
Genetic engineering of lantibiotics has been shown to be possible for
several type A lantibiotics (25, 28) but requires the
construction of a dedicated expression system that provides all of the
enzymes and factors necessary to modify and export the lantibiotic
peptide. The possibility of constructing such an expression system for
modified mersacidin molecules with extended antibiotic spectra or
increased efficacy prompted us to explore the mersacidin biosynthetic
gene cluster. Here we present for the first time the complete sequence
of a gene cluster of a type B lantibiotic.
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MATERIALS AND METHODS |
Bacterial strains and growth conditions.
For isolation of
DNA, the mersacidin producer Bacillus sp. strain HIL
Y-85,54728 (9) was grown in 45 ml of tryptic soy broth at
30°C to an optical density at 600 nm of 1. For mersacidin production
experiments, a synthetic medium (2) was employed. Antibacterial activity was determined in an agar diffusion assay with
Micrococcus luteus ATCC 4698 as the indicator strain.
Quantitation of mersacidin by reversed-phase high-pressure liquid
chromatography was performed as described previously (2).
Escherichia coli 71-18, E. coli BHM 71-18 mutS (51), Bacillus subtilis W23
(3), and Staphylococcus carnosus TM 300 (45) were used as cloning hosts and cultivated in the
presence of the appropriate antibiotics on tryptic soy agar, in tryptic
soy broth, or in Luria-Bertani medium. B. subtilis W23 was
checked for the presence of the mersacidin biosynthetic gene cluster by
PCR using primers 1 (see below) and 3 (5'-TATAAATCAAATTTAACAAATACATTCAG-3'), which anneals to the four last codons of mrsA; however, mrsA could not
be detected. E. coli strains were transformed by
electroporation, and staphylococci and bacilli were subjected to
protoplast transformation (15, 16). Determination of MICs
was performed by a microtiter plate assay with half-concentrated
Mueller-Hinton broth.
Isolation of chromosomal DNA and cloning techniques.
Chromosomal DNA from Bacillus sp. strain HIL Y-85,54728 was
purified using Genomic-Tips 500/G in accordance with the instructions of the manufacturer (Qiagen, Hilden, Germany). All genetic
manipulations were performed as described previously (43) or
in accordance with the recommendations of the supplier (Roche,
Mannheim, Germany). After determination of the sequences downstream and
upstream of mrsA (2) on pMER1 (see Fig. 1A),
restriction digests of chromosomal DNA were hybridized with 18- to
22-bp digoxigenin-labeled oligonucleotides that had been derived from
pMER1. Those fragments that gave a positive hybridization signal were
cut out from the agarose gels, eluted with a BIOTRAP (Schleicher & Schüll, Dassel, Germany), and ligated into pUC18+
(49). All of the sequencing clones of the gene cluster that were generated by this and subsequent chromosome walking steps, as well
as the inserts of plasmids that were constructed to probe the
transcription of mrsFGE, are shown in Fig. 1A and C. pKRFGE2 contained an additional 0.73-kb EcoRI-HindIII
fragment covering the C terminus of mrsE which, however, is
located downstream of mrsK2 so that mrsE is not
reconstituted in this plasmid.
DNA sequencing and sequence analysis.
E. coli plasmid
DNA was purified by the method of Felichiello and Chinali
(13). A total of 14,190 bp of double-stranded DNA was
sequenced on both strands by a primer-walking strategy using synthetic
oligonucleotides labeled with the A.L.F.express dATP labeling mixture,
an A.L.F.express sequencer, and A.L.F.express AutoRead sequencing kits
(Pharmacia Biotech, Uppsala, Sweden) (22, 44). The PCGene
program package (version C 6.01; IntelliGenetics, Inc., Mountain View,
Calif.) was employed for DNA and protein analysis. The FASTA software
was used for protein similarity searches and identification of known
protein sequence patterns (34).
Northern analysis.
The isolation of total RNA from
staphylococci was performed employing the QIAGEN RNeasy total RNA kit
as described previously (32). For Bacillus
preparations, the cells were lysed for 15 min at 37°C after addition
of 2 mg of lysozyme per ml and 7 µl of RNase block RNase inhibitor
(Stratagene, La Jolla, Calif.) per ml. The following steps were
performed in accordance with the instructions of the manufacturers. A
60-µl volume of the eluates was precipitated with LiCl and ethanol
and resuspended in 7 µl of demineralized water. The total RNA was
then denatured with formaldehyde and separated on 1.2% agarose gels
(6.475% formaldehyde) with 1× MOPS (morpholinepropanesulfonic acid)
as the running buffer (43). Transfer of the RNA to the nylon
membrane was performed by capillary blotting within 18 h.
Inactivation of mrsA by allelic exchange.
A
resistance cassette was constructed using the 0.6-kb EcoRV
fragment covering the 3' end of mrsE and 179 bp of the
mrsE mrsA intergenic region, the erythromycin resistance
gene of pUC19E (23), and a 0.7-kb fragment covering the last
three codons of mrsA, the intergenic region, and the 5' end
of mrsR1. This cassette was cloned into the PvuII
site of the temperature-sensitive vector pTVO (corresponding to pBD95
(17) but carrying the pE194Ts origin of replication) in
S. carnosus TM 300. The resulting plasmid was transformed
into the producer strain at 30°C, and clones that had integrated the
plasmid were selected by a temperature shift to 42°C. Clones that had
performed the double crossover were selected after 48 h of growth
in the presence of 25 mg of erythromycin per liter. The integration was
checked by PCR employing primers 1 (5'-GGGTATATGCGGTATAAACTTATG-3') and 2 (5'-GTTTCCCCAATGATTTACCCTC-3'), which amplify the DNA
fragment between bp 4818 and 5415 that contains mrsA.
Nucleotide sequence accession number.
The nucleotide
sequence presented in this report has been submitted to the EMBL
database under accession number AJ250862.
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RESULTS |
Organization of the mersacidin biosynthesis gene cluster.
The
cloning strategy of the mersacidin gene cluster is shown in Fig.
1A. A total of 14.2 kb was sequenced
comprising the complete mersacidin biosynthesis gene cluster and
neighboring regions. The gene cluster covered 12.3 kb and contained 10 putative open reading frames, 3 of which were located on the opposite
strand of mrsA, the structural gene of the mersacidin
prepeptide (2) (Fig. 1B). All open reading frames were
preceded by putative ribosome-binding sites and were initiated by
either an ATG or a TTG start codon.

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FIG. 1.
Mersacidin biosynthetic gene cluster. (A) Inserts of
sequencing clones. (B) Organization of the gene cluster. The arrows
indicate relative directions of transcription. (C) Inserts of plasmids
constructed for transcription experiments with mrsFGE.
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Regulation.
MrsR2 codes for a typical response regulator
protein of 240 amino acids and a theoretical molecular mass of 27.6 kDa. It displays the highest sequence similarity to the YvrH protein of
B. subtilis (47.9% identity) (26). MrsR2 belongs
to the subfamily of OmpR-like response regulators, which also includes
the response regulators of the nisin and subtilin gene clusters
(21, 47). The conserved Asp residues (positions 12, 13, 14, and 57) of the N terminus and the Lys-Pro-Phe motif (positions 105 to
107) are present. The start codon of the following downstream open
reading frame, mrsK2, overlaps the stop codon of
mrsR2. MrsK2 is a 477-amino-acid protein (theoretical
molecular mass, 55.6 kDa) with the typical features of a sensor kinase
which acts as a sensor for environmental signals. The N terminus
contains two hydrophobic membrane-spanning regions which are
interrupted by a 90-amino-acid hydrophilic stretch that is probably the
extracellular sensor domain. MrsK2 shows sequence similarity to the
YvrG protein of B. subtilis (30.1% overall identity)
(26) and ScnK of the streptococcin A-FF22 gene cluster
(24.3% overall identity) (29). The sequence similarity of
MrsK2 to the histidine kinases of the nisin and subtilin gene clusters,
NisK (12) and SpaK (21), is restricted to the
hydrophilic intracellular C-terminal part, which contains the conserved
His residue (position 253), where autophosphorylation is thought to take place; the catalytic Asp residue (position 372); and two Gly-rich
motifs that are supposed to be the ATP-binding site.
A further open reading frame,
mrsR1, encodes a putative
response regulator protein of 213 amino acids (24.2 kDa) and is located
95 bp downstream of
mrsA. Sequence analysis identified MrsR1
as
a response regulator protein, but the sequence similarity of MrsR1
to other response regulator proteins is significantly lower than
that
of MrsR2. The phosphate acceptor site Asp (position 53) is
present;
however, the conserved Asp residues in the N terminus
of the protein
and the Lys residue of the conserved Lys-Pro-Phe
motif are missing.
Therefore, it is doubtful that MrsR1 can change
its conformation in
response to phosphorylation, since this effect
is mediated by the Lys
residue. The C-terminal DNA-binding motif
of the OmpR subfamily is
present in MrsR1. EpiQ is the single
regulatory protein of the
epidermin gene cluster, and the C terminus
of EpiQ displays homology to
PhoB and OmpR, whereas the N terminus
of EpiQ does not show homology to
response regulator proteins
of this family. Nevertheless, it has been
demonstrated that EpiQ
binds to one of the inverted repeats upstream of
epiA and is indispensable
for production of epidermin
(
35). However, there is no significant
similarity between
the N termini of MrsR1 and EpiQ. Alignment
of MrsR1 with MutR
(
37), which is yet another single regulatory
protein in a
lantibiotic gene cluster, did not show any
similarity.
Immunity.
At 242 bp upstream of the start codon of
mrsR2 in reverse orientation, another open reading frame,
mrsF, codes for a protein with similarity to the ATP-binding
domain of an ABC transporter and is, in turn, followed by two open
reading frames coding for membrane domains: the start codon of
mrsG is located 10 bp downstream of the stop codon of
mrsF, and the start codon of mrsE follows 16 bp
downstream of mrsG. MrsF is a 303-amino-acid (33.8-kDa) protein that shows sequence similarity to the bacitracin transport protein of Bacillus licheniformis (45.1% identity)
(36) and several LanF proteins, such as LctF (41.8%
identity) (41) and MutF (40.9% identity) (37)
from the lacticin and mutacin II gene clusters. All of the residues
that are involved in the ATP-binding boxes are conserved in MrsF. The
membrane domains MrsE (247 amino acids, 27.4 kDa) and MrsG (244 amino
acids, 27.1 kDa) display only a little similarity to their counterparts
in other lantibiotic gene clusters, but hydropathy plots predict the
formation of six membrane-spanning helices in each protein.
Modifying enzymes.
The mersacidin gene cluster contains two
modification enzymes. An open reading frame, mrsD, that is
located 53 bp downstream of mrsR1 in reverse orientation
with respect to mrsA encodes a 194-amino-acid (21.7-kDa)
protein with strong sequence similarity (31.4% identity) to MutD from
the mutacin III gene cluster (38) and EpiD (25.9%
identity), which is an oxidative decarboxylase in the epidermin gene
cluster (Fig. 2). EpiD is a
181-amino-acid enzyme which is responsible for the biosynthesis of the
C-terminal S-[(Z)-2-aminovinyl]-D-cysteine
residue of epidermin (27). Mersacidin contains a C-terminal
S-[(Z)-2-aminovinyl]-3-methyl-D-cysteine residue, and MrsD is supposed to catalyze the analogous reaction.

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FIG. 2.
Comparison of the sequences of MrsD, MutD, and EpiD from
the mutacin III and epidermin biosynthesis gene clusters (1,
38). The asterisks indicate identical residues, and residues with
high and low degrees of conservation are indicated by colons and dots,
respectively.
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The open reading frame
mrsM starts 212 bp upstream of
mrsD on the opposite strand and encodes a putative
1,062-amino-acid
(121-kDa) protein that exhibits sequence similarity to
several
LanM proteins, for example, CylM (26.2% identity)
(
14) and LctM
(22.8% identity) (
40). Sequence
alignments show 13 conserved
regions within the proteins, 6 of which
were identified in the
N terminus, including the new motives N5 and N6
(Fig.
3). The
LanM proteins are supposed
to catalyze dehydration and thioether
formation of the lantibiotic
prepeptides.

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FIG. 3.
Conserved motifs of the N termini of the LanM proteins.
The asterisks indicate identical residues, and residues with high and
low degrees of conservation are indicated by colons and dots,
respectively.
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Transport function and processing.
At 51 bp downstream of the
stop codon of mrsM, there is an open reading frame encoding
a putative 730-amino-acid (83.1-kDa) protein that shows sequence
similarity to the dual-function transporters found in the gene clusters
of GG-type lantibiotics, for example, CylB (29.0% identity
[14]). These proteins are involved in export of the
modified lantibiotic from the cell, as well as processing of the leader
peptide (18). The N-terminal 130 amino acids of MrsT display
sequence similarity to the cysteine protease domains of these proteins,
and the conserved Cys residue that was shown to be active in the LagD
transporter (18) is also present in MrsT. The C-terminal 600 amino acids show similarity to LanT transporters, and a hydropathy plot
predicts six hydrophobic membrane-spanning domains.
Localization of the gene cluster.
At 292 bp downstream of
mrsT, the stop codon of another open reading frame was
found. A search of the B. subtilis data bank revealed that
the protein encoded by this open reading frame shows nearly 100%
similarity to ioIJ of the myoinositol dehydrogenase gene cluster. In B. subtilis 168, this gene lies
adjacent to yxdJ and yxdK, which encode a
two-component regulatory system with an unknown function
(52). In Bacillus sp. strain HIL Y-85,54728, open
reading frames with sequences nearly identical to those of yxdJ and yxdK were found 149 bp downstream of
mrsK2, indicating that the mersacidin gene cluster is
inserted between ioIJ and yxdJ at 348° on the
chromosome of the producer strain. The nucleotide sequence that frames
the mersacidin gene cluster in Bacillus sp. strain HIL
Y-85,54728 differs from the noncoding region of approximately 100 bp
located between ioIJ and yxdJ in B. subtilis 168 and contains two different indirect repeats. The
overall GC content of the gene cluster, 34.2%, is lower than that of
the chromosome of B. subtilis 168, with 43.5% GC
(26).
Transcription of mrsA.
At 283 bp downstream of the stop
codon of mrsE, the structural gene for mersacidin,
mrsA, is located, which encodes the 68-amino-acid prepeptide
of mersacidin (2). Only one 270-bp transcript corresponding to mrsA, which appeared between 8 and 16 h of
cultivation and which was still present after 32 h, was detected
in Northern blots (Fig. 4). Eight base
pairs downstream of mrsA, a stem-loop structure (
G,
85.7 kJ/mol) is located that could act as a rho-independent transcription terminator. In order to investigate whether mersacidin is
the only antibacterial substance excreted by the producer strain, mrsA was exchanged for an erythromycin resistance cassette
by double homologous recombination in Bacillus sp. strain
HIL Y-85,54728 Rec1. The integration was confirmed by PCR, which
yielded a 1,410-bp product; the 597-bp product of the wild-type strain
was not detected. The strain did not hybridize with a probe against
mrsA in Southern and Northern blots, and after 64 h of
cultivation in production medium, no mersacidin could be detected in
the high-pressure liquid chromatography fractions of the supernatant by
assay of the antibacterial activity. Producer self-protection against
mersacidin was not affected in this clone. In spite of the
mrsA knockout, we detected some antibacterial activity in
the supernatant, indicating that the producer strain is indeed able to
synthesize several antibiotic substances (Fig.
5). One of these compounds could be a
surfactin-like antibiotic, since we also cloned and sequenced a region
with high similarity to the Srf1 subunit of the surfactin synthetase
(data not shown).

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FIG. 4.
Northern blot analysis of the time course of
mrsA transcription. Lanes: 1, size standard (the values to
the left are sizes in kilobases); 2, 8 h of cultivation; 3, 16 h of cultivation; 4, 24 h of cultivation; 5, 32 h of
cultivation.
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FIG. 5.
Time course of production of antibacterial activity
(diameter of inhibition zone against M. luteus, in
centimeters ( ) and growth ( ) of the wild-type producer strain (A)
and Bacillus sp. strain HIL Y-85,54728 Rec1
(mrsA::Erm) (B).
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Transcription of putative immunity genes.
Transcription
analyses of mrsFGE in the wild-type producer strain
employing probes specific for mrsF, mrsG, and
mrsE showed that all three genes are transcribed from an
operon and yield a 2.5- to 2.6-kb RNA (Fig.
6), which corresponds well to the
theoretical length of the mrsFGE operon (2,470 bp).
mrsFGE was then cloned into the E. coli-Staphylococcus shuttle vector pCU1 (1), giving pCC2 (Fig. 1C), and transformed into S. carnosus TM 300 and
B. subtilis W23. Transcription analysis showed that the
genes were not transcribed and no increase in resistance against
mersacidin could be demonstrated in either strain. Attempts to clone a
plasmid harboring mrsK2R2 mrsFGE failed because this
construct was not stably maintained in either E. coli or
S. carnosus TM300. A clone containing mrsK2R2
mrsFG
E (pKRFGE2, Fig. 1C) was easily obtained, but the plasmid
did not confer self-protection, since mrsE is disrupted.
Nevertheless, transcription analysis showed that in the presence of the
putative regulatory genes, mrsFG
E was transcribed in
B. subtilis W23 (Fig. 6). This transcript is a little
shorter than that detected in the wild-type strain and is terminated
within the vector sequence. These results demonstrate that MrsR2 and MrsK2 play a role in the regulation of transcription of the putative immunity genes.

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FIG. 6.
Northern blot analysis of the transcription of
mrsFGE employing an mrsF probe. Lanes: 1, size
standard (the values to the left are sizes in kilobases); 2, wild-type
producer Bacillus sp. strain HIL Y-85,54728; 3, B. subtilis W23 harboring pCC2; 4, B. subtilis W23
harboring pKRFGE2.
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DISCUSSION |
The mersacidin biosynthetic gene cluster is inserted into the
chromosome of the producer strain close to the origin of replication, at 348°, and forms a distinct region that differs significantly in GC
content. AT-rich islands in the genome of B. subtilis 168 are often formed by prophages, remnants of prophages or transposons (26). However, sequencing of the ends of the mersacidin gene cluster did not give any indication of the presence of a prophage or
association with a transposon, although transposase or integrase genes
have often been found in the vicinity of lantibiotic gene clusters,
e.g., in the nisin (39) and lacticin 481 (41)
gene clusters. The gene cluster of mersacidin was the first gene
cluster of a type B lantibiotic to be sequenced. Compared to type A
lantibiotic gene clusters, it shows the characteristic features of a
gene cluster belonging to a GG-type leader peptide lantibiotic,
containing a LanM modification enzyme and a chimeric LanT transporter
with an associated protease domain (42). These results were
unexpected because, at first sight, the leader peptide of mersacidin
seems to differ from the GG-type leader peptides (2). It
does not display sequence similarity upon alignment with a typical
GG-type leader peptide, and there is no GG, GA, or GS double-glycine
sequence in positions
2 and
1 of the leader peptide, which is the
typical cleavage site of the protease domain of LanT. However, upon
closer inspection, these apparent inconsistencies can be at least
partly reconciled. The mersacidin prepeptide contains Ala residues at positions
1 and
2. Recently, another lantibiotic, staphylococcin C55
, that displays an AA cleavage site in combination with a chimeric LanT protein has been described (30). On the other hand, a GA sequence is present in the leader peptide of mersacidin at
positions
8 and
7; thus, double processing, as reported for the
cytolysin peptides by CylB and CylA, might be possible for mersacidin
(4). In contrast to the cytolysin gene cluster, no dedicated
serine protease is encoded in the mersacidin biosynthesis gene cluster.
However, Bacillus is a prominent producer of a number of
extracellular proteases and the subtilin gene cluster in B. subtilis 6633 does not contain a protease gene as well, indicating that subtilin and mersacidin may be processed by host enzymes. In Fig.
7, we have aligned a part of the leader
peptide of mersacidin with all of the lantibiotic GG-type leader
peptides described so far, the staphylococcin C55
, lacticin 3147 A1,
and lactocin S leaders, assuming the GA at positions
8 and
7 to be
the cleavage site of MrsT. The GG-type leader peptides show a conserved
motif that starts with a hydrophobic residue at position
15:
F/L/I-E(Q/D/N)-E-V(L)-S(T/K). The same motif is present in
staphylococcin C55
and lacticin 3147 A1 leaders starting at position
16 and even displayed by lactocin S (LDELS at positions
24 to
20). With the exception of the Ser at position
14 and the Lys at
position
5, the FSELK motif of the mersacidin prepeptide and the
following sequence of amino acid residues show similarity to the listed
leader peptides, although there is no marked similarity of the
mrsA leader peptide to one specific peptide of the GG type.
In conclusion, the mersacidin leader peptide carries fewer charged
amino acids and is longer than GG-type leader peptides (2);
nevertheless, some similarity to the conserved motifs of the GG-type
leader peptides can be discerned if the GA at positions
8 and
7 is
assumed to be the processing site. It has been demonstrated for nisin
that the leader peptide is involved in the modification reactions or in
targeting of the peptide to the modification and/or export complex.
Perhaps the conserved motif of the above leaders fulfills a similar
function by targeting the prepeptides to the LanM-LanT
modification-and-export machine (48). On the other hand, the
conserved sequence and the conserved biosynthesis machinery may simply
indicate an evolutionary interrelationship between mersacidin and the
GG-type leader peptide subgroup of type A lantibiotics. However, if
such an interrelationship exists, the classification into type A and B
lantibiotics, that was introduced on the basis of structural data
(before the lantibiotics of the GG-type leader peptide had been
described) and mode-of-action data, will have to be reconsidered and
the sequence of biosynthetic gene clusters of other type B
lantibiotics, e.g., cinnamycin, would be most interesting. In addition,
not only the architecture of the gene cluster but also the modes of
action of some type A lantibiotics and mersacidin are not as different
as assumed previously. This fact is demonstrated by the putative
immunity genes found in the mersacidin gene cluster and recent results obtained with epidermin and nisin. Unlike type A lantibiotics, mersacidin does not form pores but inhibits transglycosylation by
binding to the ultimate cell wall precursor lipid II
[undecaprenyl-pyrophosphoryl-MurNAc(pentapeptide)-GlcNAc] (5,
7). In spite of this, a LanEFG transporter is present in the gene
cluster, which is also found in the gene clusters of, e.g., nisin and
epidermin. The immunity transporter EpiFEG prevents binding of
epidermin to the membrane, and consequently, fewer pores are formed
(31). However, it is possible that LanEFG specifically
prevents lantibiotic binding to or interaction with lipid II.
Mersacidin acts by binding to lipid II, and recent studies have shown
that the presence of lipid II facilitates pore formation by epidermin
and nisin, which utilize the cell wall precursor as a docking molecule
in the bacterial membrane (6). The producer strain of the
antibiotic bacitracin, which acts by binding to undecaprenylpyrophosphate and prevents recyclization of the carrier to
undecaprenylphosphate, is protected by an ABC transporter with sequence
similarity to MrsF (36).

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FIG. 7.
Alignment of the C-terminal part of the leader sequences
of lantibiotic prepeptides harboring a GG-type cleavage site with an
internal fragment of the mersacidin prepeptide. Amino acid residues
that are not conserved are in lowercase, whereas residues that are
conserved in five or more leader peptides are in uppercase and boxed
(11, 30, 33, 40, 42, 50).
|
|
The exchange of mrsA for an erythromycin resistance cassette
resulted in the loss of mersacidin production, but antibacterial activity was still excreted, indicating that mersacidin is only one of
the antibacterial substances that are produced by the strain. This is
not unusual for Bacillus strains; wild-type
Bacillus isolates produce several antibiotic substances,
such as surfactin, fengycin, difficidin, and sublancin, and sequencing
of the B. subtilis 168 genome has shown that nearly 4% of
the chromosome is devoted to coding for large multienzymes involved in
antibiotic biosynthesis (26). The production of mersacidin
was growth phase dependent. Transcription of mrsA started at
the onset of early stationary phase, between 8 and 16 h of
cultivation, corresponding well to the detection of mersacidin in the
supernatant after 14 to 15 h. This correlation does not apply to
all lantibiotics; mutacin II is expressed independently of the growth
phase but produced only at the end of the exponential phase
(37). Only a short, monocistronic 0.27-kb transcript
representing mrsA was detected by Northern blotting. The
stem-loop structure that is located downstream of mrsA might
function as a transcriptional terminator or barrier to exonucleolytic
degradation. In many lantibiotic gene clusters, similar structures are
located downstream of the prelantibiotic genes and serve to limit the
expression of the biosynthetic enzymes (42).
The mersacidin gene cluster is the first lantibiotic gene cluster to
contain two open reading frames that display homology to regulatory
proteins. A similar combination involving one histidine kinase and two
response regulator proteins was identified in the bacteriocin gene
cluster of Lactobacillus plantarum C11 (10). Three lantibiotic gene clusters, those of nisin, subtilin, and streptococcin A-FF22, are regulated by a two-component regulatory system consisting of a sensor kinase and a response regulator (12,
21, 29). For nisin, the signal that activates transcription of
the gene cluster has been elucidated; here, the lantibiotic itself
regulates its biosynthesis and immunity genes (24).
Mersacidin is apparently not the signaling molecule for transcription
of the putative immunity genes; in B. subtilis W23,
transcription of mrsFGE was initiated only in the presence
of the two-component regulatory system formed by MrsR2 and MrsK2.
B. subtilis W23 does not produce mersacidin, since it does
not harbor the mersacidin biosynthetic gene cluster, and the
lantibiotic had not been added to the culture in this particular
experiment. The nature of the signal molecule, the regulation of
mersacidin biosynthesis, and the interplay of MrsR1 with MrsR2 and
MrsK2 will be the subjects of future research, and the understanding of
these processes will be particularly important in the area of
mersacidin biotechnology.
 |
ACKNOWLEDGMENTS |
This work was supported by grants from the Deutsche
Forschungsgemeinschaft (Bi 504/1-2 and Bi 504/1-3) and through the
BONFOR program of the Medizinische Einrichtungen, University of Bonn.
We gratefully acknowledge C. Szekat for expert technical assistance, I. Wiedemann for contributions to the growth curves, and T. Schmitter for
contributions to the Northern blots and thank Aventis Pharma AG,
Frankfurt am Main, Germany, for making the mersacidin producer strain available.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Institut
für Medizinische Mikrobiologie und Immunologie der
Universität Bonn, Sigmund-Freud-Str. 25, D-53105 Bonn, Germany.
Phone: 49-228-287-9103. Fax: 49-228-287-4808. E-mail:
bierbaum{at}mibi03.meb.uni-bonn.de.
Present address: Abt. Biotechnik, Pharma-Zentrale GmbH, D-58313
Herdecke, Germany.
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