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Applied and Environmental Microbiology, June 2000, p. 2658-2663, Vol. 66, No. 6
Institute of Genetic Ecology, Tohoku
University, Katahira, Aoba-ku, Sendai,
980-8577,1 Plant Biotechnology
Institute, Ibaraki Agricultural Center, Ago, Iwama, Nishi-Ibaraki,
319-0292,2 Department of Plant
Physiology, National Institute of Agrobiological Resources,
Tsukuba, Ibaraki, 305-8602;3 and
School of Agriculture, Ibaraki University, Ami, Ibaraki,
300-0393,4 Japan
Received 13 September 1999/Accepted 22 March 2000
Application of 1-aminoocyclopropane-1-carboxylic acid, an ethylene
precursor, decreased nodulation of Macroptilium
atropurpureum by Bradyrhizobium elkanii. B. elkanii
produces rhizobitoxine, an ethylene synthesis inhibitor. Elimination of
rhizobitoxine production in B. elkanii increased ethylene
evolution and decreased nodulation and competitiveness on M. atropurpureum. These results suggest that rhizobitoxine enhances
nodulation and competitiveness of B. elkanii on M. atropurpureum.
The symbiotic interactions between a
legume and (brady)rhizobia result in a unique, nitrogen-fixing
plant organ, the nodule. Recent studies have shown that the
phytohormone ethylene inhibits nodule formation in some legumes
(8, 9, 16, 24, 25). Application of
1-aminoocyclopropane-1-carboxylic acid (ACC), a precursor of ethylene,
inhibits nodulation in Medicago truncatula (24).
Rhizobitoxine
[2-amino-4-(2-amino-3-hydropropoxy)-trans-but-3-enoic
acid] is an ethylene synthesis inhibitor that is produced by the
legume symbiont Bradyrhizobium elkanii (15, 17-19, 22, 39). It is thought that production of this compound enhances nodulation of the host legume because of its inhibitory effect on
ethylene synthesis. However, some reports have shown that there is not
a significant difference in nodule number between plants inoculated
with B. elkanii USDA61 and plants inoculated with
rhizobitoxine-deficient mutants during nodulation of Glycine
max, Glycine soja, Vigna unguiculata, and
Macroptilium atropurpureum (26, 39). Recently, Duodu et al. observed a significant difference in nodule number between
plants inoculated with isogenic variants of USDA61 during nodulation of
Vigna radiata (7). Although these findings do not
seem to be consistent with the hypothesis that rhizobitoxine has a
positive effect on nodulation, the inconsistency can be explained by
differences in the ethylene sensitivity of nodulation among leguminous
species; nodulation of G. max is generally not sensitive to
ethylene (10, 31, 38), while nodulation of V. radiata is sensitive (7). The inconsistency could also
result from differences in the abilities of the strains used in the
experiments to produce rhizobitoxine; strain USDA61 is a weak producer
of rhizobitoxine (39).
In addition to G. max, the leguminous plant M. atropurpureum is a nodulating host for B. elkanii and
Bradyrhizobium japonicum (12, 15). Although the
effect of ethylene on nodulation has been studied in many leguminous
host plants so far, the effect of ethylene in M. atropurpureum is not known. B. elkanii was found to be
more competitive than B. japonicum for nodulation of
M. atropurpureum in a multistrain environment when a field
soil was inoculated with a mixture of several strains isolated from the field soil (21). In general, B. elkanii
accumulates rhizobitoxine in cultures and in nodules, while B. japonicum does not (5, 15, 18, 19). These results led
us to investigate the role of rhizobitoxine production on the
nodulation and competitiveness of B. elkanii on M. atropurpureum by using a B. elkanii strain that
produces high levels of rhizobitoxine, B. elkanii USDA94.
Siratro (M. atropurpureum Urb. cv. Siratro) seeds were
obtained from Yukijirushi Shubyo Co. (Hokkaido, Japan). The seeds were surface sterilized with 70% ethanol for 5 min and then with 3% hydrogen peroxide for 1 min; they were washed 10 times at 1-min intervals with sterile distilled water after each treatment. The surface-sterilized seeds were sown in sterile plastic growth pouches that were watered with a nitrogen-free plant nutrient solution (1) and incubated at 25°C for 2 days in the dark. Two days after sowing, the germinated young seedlings in the pouches were transferred to a chamber and grown by using the following cycle: 14 h of light at 28°C and 10 h of darkness at 23°C.
The bacterial strains and plasmids used in this study are listed in
Table 1. Bradyrhizobium
strains were maintained in HM medium (4) containing 0.1%
arabinose and 0.025% yeast extract or in Tris-YMRT (20).
Escherichia coli strains were maintained in Luria-Bertani
medium (29). Before inoculation, Bradyrhizobium strains were cultured in HM medium containing 0.1% arabinose and 0.025% yeast extract at 30°C for 6 days. The cells were collected by
centrifugation and washed twice with sterile water, and the concentration was adjusted to 107 cells · ml
0099-2240/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Rhizobitoxine Production by Bradyrhizobium
elkanii Enhances Nodulation and Competitiveness on
Macroptilium atropurpureum
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1 by direct counting with a Thoma hemocytometer. One
milliliter of the bacterial suspension was inoculated onto 2-day-old
seedlings in sterile growth pouches.
TABLE 1.
Bacterial strains and plasmids used in this study
To see if production of ethylene in M. atropurpureum inhibits nodule formation by B. elkanii, siratro seedlings were inoculated with USDA94 in the presence and in the absence of ACC (Sigma-Aldrich Japan, Tokyo, Japan). It is thought that applying ACC to plants increases the ethylene level because this compound is a precursor of ethylene. ACC Powder was diluted in nitrogen-free plant nutrient solutions to final concentrations of 1 and 10 µM. The nutrient solutions containing ACC were added to plant roots just after inoculation and every day during plant growth. Siratro seedlings that received a nitrogen-free nutrient solution that did not contain ACC were used as controls. For a time course study of nodulation, nodules were counted by counting the visible nodules with diameters greater than 0.2 mm and large globular nodules with diameters greater than 1 mm. Student's t test was used to assess the statistical significance of differences in nodule number at a confidence level of 0.05.
Ethylene synthesis was measured by the method of Suganuma et al.
(34). After the nutrient solution was removed with paper towels, plant roots were incubated in a 5-ml glass container at 30°C
for 2 h (three to five plants per container). The ethylene concentration in the container was measured by using a model GC-7A gas
chromatograph (Shimadzu, Tokyo, Japan) equipped with a flame ionization
detector and a Porapak Q column (2.2 mm by 2 m; Waters Associates
Inc.). We calculated the rate of ethylene synthesis by using the
concentrations obtained. As determined in the absence of ACC, the rate
of ethylene synthesis in siratro roots 3 days after inoculation with
USDA94 (0.79 pmol of ethylene · plant
1 · h
1) was less than the rate of ethylene synthesis in
uninoculated control roots (5.46 pmol of ethylene · plant
1 · h
1). These results suggest
that inoculation with B. elkanii suppressed ethylene
synthesis in the M. atropurpureum roots, and they are consistent with previous findings that rhizobitoxine application inhibits ethylene synthesis and the enzymatic activity of ACC synthase
in the ethylene synthesis pathway in other plants (23, 40).
When 1 µM ACC was applied to USDA94-inoculated siratro roots just
after inoculation and during plant growth, the ethylene synthesis rate
increased from 0.79 pmol of ethylene · plant
1
· h
1 (no ACC) to 3.29 (1 µM ACC) or 3.75 (10 µM
ACC) pmol of ethylene · plant
1 · h
1 within 3 days after inoculation. These results
indicate that ACC treatment increased ethylene synthesis in M. atropurpureum roots inoculated with rhizobitoxine-producing
B. elkanii. Using 1 µM ACC, we assessed the effect of
ethylene on nodulation of M. atropurpureum inoculated with
B. elkanii. The number of nodules formed in the presence of
ACC 8 days after inoculation and later were significantly less than the
numbers of nodules formed in the absence of ACC (Fig.
1). This finding suggests that in
M. atropurpureum ethylene-induced inhibition of nodulation
is similar to inhibition of nodulation in Pisum sativum
(8, 16), Trifolium repens (8),
Medicago sativa (25), Vicia sativa
(9), M. truncatula (24), and V. radiata (7).
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B. elkanii USDA61 is a weak producer of rhizobitoxine
(39), so a strain that produces high levels of
rhizobitoxine, B. elkanii USDA94, was used to construct a
rhizobitoxine-deficient mutant. The rtxA gene reportedly is
responsible for rhizobitoxine production by B. elkanii
USDA61 (27). This gene encodes two regions similar to a rat
serine:pyruvate aminotransferase and a yeast
O-acetylhomoserine sulfhydrolase (27, 28). The
rhizobitoxine-deficient mutant was constructed by homologous DNA
recombination by using the homologous rtxA gene DNA from
USDA94 and a kanamycin resistance gene. To obtain a DNA fragment
homologous to the rtxA gene, we designed two primers (5'-TAG
AAT TCT CCA ACG AGT GAC AGT ATG CGA-3' and 5'-CTA ACT GAA CAG CCT CAT
AAC G-3') and used them for PCR amplification of total DNA of B. elkanii USDA94 with the following temperature program: 94°C for
2 min, followed by 40 cycles consisting of 94°C for 1 min, 55°C for
1 min, and 72°C for 3 min. The PCR products were cloned into pCR2.1
(Invitrogen, San Diego, Calif.). The DNA sequences of the clones were
determined by using a model 373A DNA sequencer (Perkin-Elmer Japan,
Chiba, Japan). One of the clones obtained contained a 2,948-bp insert
whose sequence was 99.6% identical to the DNA sequence of the
rtxA gene of USDA61. This plasmid was designated
pCR7-2950.8. Plasmid pCR7-2950.8 was digested with EcoRI,
and a 2.9-kb EcoRI fragment was cloned into pUC18. The
plasmid obtained was designated pUC7-2950.1. Plasmid pUC7-2950.1 was
digested with XhoI, and a 1.6-kb fragment containing the
aminoglycoside 3'-phosphotransferase (aph) gene from
pUC4-KIXX (Amersham-Pharmacia Biotech, Uppsala, Sweden) was inserted.
The resulting plasmid was designated
pUC7-2950::KIXX.15. Plasmid
pUC7-2950::KIXX.15 was digested with EcoRI. A
4.6-kb EcoRI fragment from
pUC7-2950::KIXX.15 was ligated into pSUP202
(33). The resulting plasmid was designated pSUPrtx::KIXX.7 (Fig. 2A). The
restriction map of the region around rtxA in USDA94 is shown
in Fig. 2B. These cloning experiments were performed by using E. coli JM109.
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Plasmid pSUPrtx::KIXX.7 was used to transform E. coli S17-1
-pir (37) for conjugative
transfer to Bradyrhizobium cells. The transformant was grown
at 37°C overnight in Luria-Bertani medium containing 50 mg of
kanamycin per liter, 50 mg of ampicillin per liter, and 20 mg of
tetracycline per liter. B. elkanii USDA94 was grown in HM
medium at 30°C for 6 days. Cells of the E. coli transformant and B. elkanii USDA94 were collected, washed
with sterile 0.8% NaCl, and resuspended in sterile 0.8% NaCl
containing 0.01% Tween 20. The suspension was applied to a sterile
filter and incubated at 30°C overnight. The cells on the filter were suspended in sterile water, spread onto HM medium containing 150 mg of
kanamycin per liter and 50 mg of polymyxin B per liter, and incubated
at 30°C. Kanamycin- and polymyxin B-resistant colonies were selected
and maintained in HM medium containing 150 mg of kanamycin per liter
and were used for Southern analysis. The probes used in the Southern
analysis were the 3.0-kb EcoRI rtxA homologue fragment from pCR7-2950.8, the EcoRI-digested pSUP202
plasmid vector (length, 7.8 kb), the 1.6-kb XhoI
kanamycin-resistant aph gene of pUC4KIXX, and the 1.2-kb
BamHI fragment of p
HD7 containing Bradyrhizobium insertion element RS
(11, 14)
for DNA fingerprinting. One of the appropriate strains, a
kanamycin-resistant mutant that was designated RTS2 and was obtained
from USDA94, was used in this study. Rhizobitoxine concentrations in
cultures were determined as described by Yasuta et al. (40).
Southern analyses of RTS2 performed with the pSUP202 plasmid vector,
the aph gene fragment of pUC4KIXX, and RS
probes revealed that the mutant produced unique signals characteristic of both the
plasmid vector and the aph gene and produced the same signal pattern as the parent strain when the RS
probe was used (data not
shown). The mutant contained a DNA insertion with a kanamycin resistance cassette downstream of the rtxA gene in the
genomic DNA (Fig. 2C). The DNA insertion might have occurred through a single crossover recombination event involving the USDA94 genome and
the introduced plasmid pSUPrtx::KIXX.7 in the downstream
region of rtxA. The rhizobitoxine concentrations in the
mutant RTS2 and wild-type strain USDA94 cultures were compared. The
limit of the detection was 0.01 µM rhizobitoxine. No rhizobitoxine
was detected in the mutant RTS2 culture (concentration, <0.01 µM),
whereas the rhizobitoxine concentration in the wild-type strain USDA94 culture was 17.5 µM. Inoculation with mutant RTS2 did not induce foliar chlorosis in G. max cv. Lee (data not shown), a
finding similar to a previous finding for a rhizobitoxine mutant of
B. elkanii USDA61 (26). Because the
single-crossover mutant RTS2 did not produce rhizobitoxine, at least
one additional gene (downstream of rtxA and in the same
operon) may be required for rhizobitoxine production.
Using isogenic variants of rhizobitoxine-deficient mutant RTS2 and
wild-type strain USDA94, we assessed the effect of rhizobitoxine production by B. elkanii on ethylene synthesis in M. atropurpureum. Ethylene synthesis in plant roots was measured as
described above by examining plants on days 6 and 23 after inoculation.
On days 6 and 23 after inoculation in the absence of ACC, the rates of ethylene synthesis in siratro roots inoculated with USDA94 were less
than the rates of ethylene synthesis in uninoculated control roots
(Fig. 3). When siratro was inoculated
with RTS2, the ethylene synthesis rate was greater than the rate of
synthesis in roots inoculated with USDA94 and equivalent to the rate of
synthesis in uninoculated roots. The lack of rhizobitoxine production
by B. elkanii USDA94 resulted in a loss of ethylene
synthesis suppression in siratro, indicating that rhizobitoxine
production by B. elkanii suppressed ethylene synthesis in
M. atropurpureum. When we examined siratro roots inoculated
with USDA94 in the absence of ACC, the ethylene synthesis rate was
3.24 ± 0.68 pmol/h/plant on day 6 after inoculation, while on day
23 after inoculation ethylene synthesis was not detectable, suggesting
that more rhizobitoxine accumulated over time in the presence of
B. elkanii. Rhizobitoxine is produced in nodules and is
transported to the roots and shoots (17, 39). Because the
number of nodules on day 23 after inoculation with USDA94 was about 13 times more than the number of nodules on day 6 after inoculation (data
not shown), the increase in nodule number should have resulted in a
higher concentration of rhizobitoxine in plants inoculated with
B. elkanii.
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The effect of rhizobitoxine-deficient strain RTS2 on nodulation of
siratro was also examined. When we compared inoculation with mutant
RTS2 and inoculation with wild-type strain USDA94, we found no
difference in the percentages of nodulated plants that had the first
visible nodules (Fig. 4A). The same trend
was observed for the percentages of nodulated plants having the first large nodules (data not shown). These results suggest that a lack of
rhizobitoxine production in B. elkanii does not result in a delay in nodulation of M. atropurpureum, which is consistent
with the findings of Ruan and Peters (26), who used B. elkanii USDA61 and isogenic rhizobitoxine mutants. A lack of
rhizobitoxine production did not affect emergence of the first nodules,
but the numbers of nodules were significantly different over time after
inoculation when the isogenic variants of USDA94 were used (Fig. 4B).
When the numbers of nodules were compared, the numbers of visible
nodules on siratro roots after inoculation with the different isogenic variants were not different before day 6 after inoculation. From 8 days
after inoculation, however, the numbers of visible nodules on siratro
roots inoculated with RTS2 were less than the numbers of visible
nodules on roots USDA94. Fewer nodules after inoculation with RTS2 were
also observed when the numbers of large nodules were compared (data not
shown). These results suggest that rhizobitoxine production by B. elkanii enhances nodulation of M. atropurpureum. A
similar effect of rhizobitoxine production was described by Duodu et
al. (7), who examined ethylene-sensitive nodulation of
V. radiata. The reason(s) for the delayed effect of
rhizobitoxine production on the number of siratro nodules is not clear.
One possible explanation is that a higher concentration of
rhizobitoxine in plants is necessary before there is a visible effect
on nodulation. This seems logical because there was no difference in
the time of appearance of the first nodules when inoculation with the
rhizobitoxine mutant and inoculation with the wild type were compared
(Fig. 4A). The conclusion that rhizobitoxine production by B. elkanii enhances nodulation of M. atropurpureum seems
to contradict the data obtained with the isogenic variants of USDA61
(26). The latter data might have resulted from differences
in the ability to produce rhizobitoxine; Xiong and Fuhrmann
(39) reported that USDA94 produced more rhizobitoxine than
USDA61 produced in plants.
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To investigate competitiveness for nodulation in the wild-type and
rhizobitoxine-deficient strains, mTn5SSgusA20
(37) was used to label B. elkanii and B. japonicum strains. Recently, gusA-marked transposons,
including mTn5SSgusA20, have been developed
(37), and using these transposons has some advantages over
other techniques (2, 3, 6, 13, 30, 36). The gusA
marking system results in marked (Brady)rhizobium
cells with competitive ability indistinguishable from the competitive
ability of the parent cells; this makes screening for the competitive
ability of strains of interest simple and rapid (32).
Bradyrhizobium strains marked with gusA by using
mTn5SSgusA20 were constructed as described by
Yuhashi et al. (41). In this study, 3 weeks after
coinoculation nodules whose diameters were greater than 1 mm were
harvested and used in a GUS assay performed as described by Yuhashi et
al. (41). Each of the harvested nodules was cut in half with
a razor blade. The hemispheric nodule segments were immersed in a GUS assay solution (50 mg of
5-bromo-4-chloro-3-indolyl-
-D-glucuronic acid [X-Gluc]
per liter, 2 g of sodium dodecyl sulfate per liter, 20% methanol,
20 mM sodium phosphate buffer [pH 7.0]), subjected to a vacuum for 15 min, and incubated at 30°C overnight. Samples were fixed with 0.5%
glutaraldehyde-0.2 M sodium cacodylate (pH 7.2) for 1 h, washed
twice with distilled water, and observed with a stereoscopic
microscope. When uniform GUS activity was observed in the infected
region of a nodule, the nodule was considered occupied only by a
gusA-marked strain. When there was no GUS activity in the
infected region of a nodule, we assumed that the nodule was formed only
by the unmarked strain. When GUS activity was observed as a spattered
pattern in the infected region of a nodule, the nodule was considered
cooccupied by both strains. In the case of cooccupation, each strain
was scored as if it occupied one-half of a nodule in order to calculate
nodule occupancy values. The chi-square test was used to assess the
statistical significance of differences in the numbers of occupied
nodules at a confidence level of 0.05.
The gusA-marked strains B. elkanii MA941 and
B. japonicum MA106 were obtained. When MA941 was
coinoculated with parent strain USDA94 onto siratro (cell ratio, 1:1),
the nodule occupancy value for the marked strain was almost the same as
the value for the parent (47.4% USDA94 and 52.6% MA941) (Fig.
5A). Similar results were obtained when
B. japonicum MA106 and USDA110 were coinoculated (47.5%
USDA110 and 52.5% MA106) (Fig. 5B). These findings indicate that the
competitive ability of the gusA-marked strains was
indistinguishable from that of the parent strain.
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When rhizobitoxine production-deficient mutant RTS2 was coinoculated with MA941 (a gusA-marked USDA94 derivative) onto siratro roots, the nodule occupancy values for RTS2 and MA941 were 11.6 and 88.4%, respectively (Fig. 5A). Compared to the results obtained after coinoculation of USDA94 and MA941, the loss of rhizobitoxine production by USDA94 resulted in lower nodulation competitiveness in siratro roots. This suggests that rhizobitoxine production enhances the competitiveness of B. elkanii during nodulation of M. atropurpureum. As summarized by Triplett and Sadowsky (35), previous research has indicated that several phenotypes of (Brady) rhizobium strains play significant roles in nodulation competitiveness; these phenotypes include antibiosis, cell surface characteristics, motility, speed of nodulation, and symbiotic effectiveness. Among the phenotypes involved in nodulation competitiveness, rhizobitoxine production is unique because it suppresses ethylene synthesis in inoculated plants.
When B. elkanii MA941 and B. japonicum USDA110 were coinoculated onto siratro roots, the nodule occupancy values were 91.5 and 8.5%, respectively (Fig. 5B). Similar results were obtained when B. elkanii USDA94 and B. japonicum MA106 were coinoculated (91.2% USDA94 and 8.8% MA106) (Fig. 5B). In our preliminary studies, similar results were also obtained when gusA-marked strains of B. elkanii USDA76 and USDA31 were used in coinoculation experiments involving USDA110 (data not shown). These results suggest that B. elkanii exhibits greater competitiveness than B. japonicum in M. atropurpureum roots. This is consistent with the observation of Minamisawa et al. that the nodule occupancy value for B. elkanii was greater than the nodule occupancy value for B. japonicum when siratro was inoculated with a field soil and a mixture of several strains isolated from the field soil (21).
When we examined competitive nodulation by using the rhizobitoxine production-deficient mutant B. elkanii RTS2 and B. japonicum MA106 (a gusA-marked USDA110 derivative), the nodule occupancy values were 61.9% RTS2 and 38.1% MA106 (Fig. 5B). Compared with the results obtained in experiments performed with the parent strains (91.5% MA941 and 8.5% USDA110; 91.2% USDA94 and 8.8% MA106) the competitiveness of RTS2 with USDA110 was less than the competitiveness of wild-type strain USDA94. These results suggest that a lack of rhizobitoxine production affects the competitiveness of B. elkanii and B. japonicum during M. atropurpureum nodulation. During M. atropurpureum nodulation, rhizobitoxine production by B. elkanii is one of the factors that contribute to high occupancy values for the species that are in competition with Bradyrhizobium field strains.
In leguminous plants in which ethylene-induced inhibition of nodulation
occurs, rhizobitoxine production is an effective strategy for enhancing
competitive nodulation. However, the mechanism that results in a higher
occupancy value for a rhizobitoxine producer is still unclear. In our
preliminary analysis, the rate of ethylene evolution in siratro roots
that were coinoculated with B. japonicum USDA110 and
B. elkanii USDA94
NOD (42) lacking
nodD1D2KABC genes was significantly
lower than the rate of ethylene evolution in siratro roots inoculated
with USDA110 alone but similar to the rate of ethylene evolution in
siratro roots inoculated with USDA94 (3 and 6 days after inoculation)
(data not shown). Lower rates of ethylene synthesis could be expected
in whole roots in a multistrain environment containing
rhizobitoxine-producing rhizobia and non-rhizobitoxine-producing rhizobia. One possible explanation for a higher occupancy value for a
rhizobitoxine producer in a multistrain environment is the local effect
of the rhizobitoxine produced at infection sites of the producer.
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ACKNOWLEDGMENTS |
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This work was supported in part by grants to K.M. from the Ministry of Education, Science, and Culture of Japan (grant 11556012) and the Joint Research Program of the Institute of Genetic Ecology, Tohoku University (grant 981002). K.Y. acknowledges a research fellowship from the Japan Society for the Promotion of Science for Young Scientists.
We thank W. Barraquio (University of Philippines, Quezon City, Philippines) for helpful comments on the manuscript.
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FOOTNOTES |
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* Corresponding author. Mailing address: Institute of Genetic Ecology, Tohoku University, Katahira, Aoba-ku, Sendai, 980-8577, Japan. Phone: 81-22-217-5687. Fax: 81-22-263-9845. E-mail: kiwamu{at}ige.tohoku.ac.jp.
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