Next Article 
Applied and Environmental Microbiology, July 2000, p. 2695-2702, Vol. 66, No. 7
0099-2240/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Effect of Model Sorptive Phases on Phenanthrene Biodegradation:
Different Enrichment Conditions Influence Bioavailability and Selection
of Phenanthrene-Degrading Isolates
Robert J.
Grosser,1,
Michael
Friedrich,2,
David M.
Ward,1,2 and
William P.
Inskeep1,*
Department of Land Resources and Environmental Sciences,
Montana State University, Bozeman, Montana
59717-0312,1 and Department of
Microbiology, Montana State University, Bozeman, Montana
59717-35202
Received 18 October 1999/Accepted 31 March 2000
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ABSTRACT |
The sorption of organic contaminants by natural organic matter
(NOM) often limits substrate bioavailability and is an important factor
affecting microbial degradation rates in soils and sediments. We
hypothesized that reduced substrate bioavailability might influence which microbial assemblages are responsible for contaminant degradation under enrichment culture conditions. Our primary goal was to
characterize enrichments in which different model organic solid phases
were used to establish a range of phenanthrene bioavailabilities for soil microorganisms. Phenanthrene sorption coefficients (expressed as
log KD values) ranged from 3.0 liters
kg
1 for Amberlite carboxylic acid cation-exchange resin
(AMB) to 3.5 liters kg
1 for Biobeads polyacrylic resin
(SM7) and 4.2 liters kg
1 for Biobeads divinyl benzene
resin (SM2). Enrichment cultures were established for control (no
sorptive phase), sand, AMB, SM7, and SM2 treatments by using two
contaminated soils (from Dover, Ohio, and Libby, Mont.) as the initial
inocula. The effects of sorption by model phases on the degradation of
phenanthrene were evaluated for numerous transfers in order to obtain
stable microbial assemblages representative of sorptive and nonsorptive
enrichment cultures and to eliminate the effects of the NOM present in
the initial inoculum. Phenanthrene degradation rates were similar for
each soil inoculum and ranged from 4 to 5 µmol day
1 for
control and sand treatments to approximately 0.4 µmol
day
1 in the presence of the SM7 sorptive phase. The rates
of phenanthrene degradation in the highly sorptive SM2 enrichment
culture were insignificant; consequently, stable microbial populations
could not be obtained. Bacterial isolates obtained from serial
dilutions of enrichment culture samples exhibited significant
differences in rates of phenanthrene degradation performed in the
presence of SM7, suggesting that enrichments performed in the presence of a sorptive phase selected for different microbial assemblages than
control treatments containing solid phase phenanthrene.
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INTRODUCTION |
Sorption of nonpolar contaminants by
natural organic matter (NOM) is often characterized by a rapid step
involving association with labile domains near the particle surface,
followed by a slower step controlled by diffusion through intraparticle
pores to hydrophobic regions (nonlabile domains) within the solid phase
matrix (3, 17, 27). Retarded intraparticle diffusion of
sorbed molecules results in significant desorption hysteresis (3,
7, 27) and is thought to be the rate-limiting step for
biodegradation in soils and sediments. Many studies performed during
the last decade support the hypothesis that rates of desorption or mass transfer from sorbed domains control rates of contaminant
biodegradation (3, 5, 17, 27). Several studies support the
conclusion that contaminants partitioned in the NOM phase are not
directly available for degradation by microorganisms (4-6, 8, 13, 33). However, this general conclusion should be tempered by recent evidence that there is significant diversity in the abilities of
microorganisms to degrade contaminants partitioned in or sorbed by NOM
(4, 11, 31).
For example, two naphthalene-degrading isolates have been shown to
exhibit significant variation in rates of degradation of sorbed
naphthalene (11). One bacterial isolate,
Alcaligenes sp. strain NP-Alk, did not enhance desorption of
bound naphthalene, whereas Pseudomonas putida ATCC 17484 promoted naphthalene desorption and may have utilized bound
naphthalene. Additional studies using naphthalene sorbed to XAD-2
(cross-linked polystyrene), a modified 2:1 layer silicate clay, and
Tenax (2,6-diphenyl-p-phenylene oxide) confirmed that the
P. putida strain had a greater ability to mineralize sorbed
naphthalene than Alcaligenes sp. strain NP-Alk (6,
11). The possible physiological explanations for such diversity
include variations in attachment to NOM surfaces (12, 16,
24), production of biosurfactants (14, 25), motility,
rates of membrane transport, and the metabolic pathways used to
mineralize phenanthrene (30). Although the majority of
studies showing variations in responses to sorbed substrates have been
done with cultivated microorganisms, they suggest that
microenvironmental gradients in contaminant bioavailability play a role
in the selection of specialized contaminant-degrading microorganisms.
Many phenotypically different polycyclic aromatic hydrocarbon
(PAH)-degrading isolates have been cultured in the laboratory by using
classical enrichment approaches (2, 9, 18, 30) where the
contaminant was provided as the sole carbon source, often in
crystalline form at concentrations greater than the aqueous solubility
limit. However, given the importance of sorption in controlling PAH
bioavailability, it is questionable whether microbial isolates
cultivated by using this approach are important in soil and sediment
environments. Enrichment strategies in which contaminants are sorbed to
organic solid phases may provide a more relevant selection environment
and may eventually lead to a better understanding of what
microorganisms and microbial processes are involved in the degradation
of contaminants present primarily as a sorbed phase.
Model organic phases have been used in several recent studies to
evaluate the effects of sorption and mass transfer rates on the
microbial degradation of organic contaminants. Scow and Alexander
(28) showed that the degradation of phenol and glutamate by
a Pseudomonas sp. was controlled by diffusion from
interparticle pore spaces in clay and polyacrylamide gel exclusion
beads. Harms and Zehnder (13) used porous Teflon beads to
study the degradation of sorbed 3-chlorodibenzofuran by a
Sphingomonas sp. and found that attached cells degraded the
bound chemical more rapidly than could be accounted for by the rates of
desorption into the aqueous phase. Calvillo and Alexander
(4) used polyacrylic porous resins to study the microbial
degradation of sorbed biphenyl and found that biphenyl sorbed on
polyacrylic beads was mineralized at a rate higher than the rate of
abiotic desorption. However, until the recent work by Tang et al.
(31), model solid phases had not been employed to
cultivate microorganisms specifically adapted to
low-bioavailability environments. In the study by Tang et al., a
bacterium isolated by enrichment on phenanthrene sorbed to polyacrylic porous resin degraded sorbed phenanthrene more rapidly than did an
isolate cultivated by using the traditional approach of providing contaminants in soluble or crystalline form. Although that study did
not focus on microbial community structure, the results demonstrate the
importance of enrichment strategies designed to more closely simulate
the conditions in soil and/or sediment environments.
In this paper, we describe the use of model solid phases in enrichment
experiments designed to evaluate degradation of a representative PAH
(phenanthrene) and microbial selection for a range of contaminant bioavailabilities. In this study, we (i) determined the
sorption-desorption characteristics of model solid phases used in
enrichment cultures, (ii) evaluated the effects of phenanthrene
sorption to model solid phases on the degradation kinetics in
enrichment cultures by using two contaminated soils as initial inocula,
and (iii) found that bacterial isolates enriched under reduced
phenanthrene bioavailability conditions exhibit higher rates of
phenanthrene degradation in a sorptive environment than isolates
enriched in the presence of solid phase phenanthrene. In the
accompanying paper (6a), we present the results of molecular
analyses in which we examined the nature of microbial communities and
isolates enriched under these conditions in order to corroborate that
sorption-limited bioavailability plays an important role in the
selection of contaminant-degrading microorganisms.
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MATERIALS AND METHODS |
Soils.
Two soils from geographically distant sites were used
as inocula for batch enrichments. One soil was obtained from an
abandoned coal gasification site in Dover, Ohio, and the other was
obtained from a wood treatment facility in Libby, Mont. (Table
1). Both soils exhibited significant
levels of total petroleum hydrocarbons and PAHs (determined by
Environmental Protection Agency methods 8440 and 8275A, respectively
[22, 29]), suggesting that prior enrichment of
PAH-degrading microorganisms had occurred. The potential of these soils
to mineralize phenanthrene was verified by performing serum bottle
radiorespirometry as described by Knaebel and Vestal (20).
The soils were wetted to approximate field capacity by using sterile
deionized distilled water (dH2O), and then 0.1-ml aliquots
of [9-14C]phenanthrene (total
[9-14C]phenanthrene added = 0.007 mg kg
1)
dissolved in acetone were added, followed by brief mixing. The [9-14C]phenanthrene (>98% pure) was obtained from Sigma
Chemical Co. (St. Louis, Mo.) and had a specific activity of 59.5 mCi
mmol
1. Evolution of 14CO2, which
was trapped on paper wicks saturated with 0.5 M NaOH and quantified by
liquid scintillation counting, showed that indigenous microbial
populations were capable of degrading approximately 45% of the freshly
added phenanthrene (Table 1). Consequently, the soils contained active
phenanthrene-degrading microbial populations.
Model organic phases.
Model solid phases (Table
2) with different polarities, C/O ratios,
and surface functional groups were selected to provide a range of
phenanthrene sorption in enrichment cultures. The geometric surface
areas of the solids were calculated based on mean particle size and
ranged from 0.01 to 0.05 m2 g
1. The
surface area of the nonporous polymethylmethacrylate (PMMA) beads
determined by using BET-N2(g) isotherms (15) was
10-fold greater than the geometric surface area, indicating moderate
surface roughness. The other solids used (Amberlite IRC-50 [AMB],
Biobeads SM7, and Biobeads SM2) are porous resins that have
considerably larger total surface areas. The surface area of AMB
determined by using BET-N2(g) isotherms while the solid was
in the dry state may not reflect contributions from the internal
surface area. Regardless, the internal surfaces of AMB, SM7, and SM2
are not accessible to microorganisms because the pore diameters are
<0.01 µm. The AMB weak cation-exchange phase with carboxylic acid
functionality was chosen as a model phase to represent the importance
of carboxylic acid functional groups in humic substances.
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TABLE 2.
Properties of model solid phases used in enrichment
environments to obtain a range of phenanthrene bioavailabilities
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Sorption isotherms describing the extent of phenanthrene sorbed to each
model solid phase were determined with 25-ml glass
centrifuge tubes
containing 0.5 g of solid and a 7.5-ml total
volume containing
phenanthrene at initial concentrations of 0.01,
0.05, 0.1, 0.5, and 1.0 mg liter
1. The background solution (pH 7.0) contained the
following dissolved
ions at concentrations intended to represent the
concentrations
of constituents typically found in soil solutions
(
1): Ca (4
mM), Mg (2 mM), Na (2.5 mM), K (0.5 mM),
NH
4 (2.5 mM), Fe (0.02
mM), SO
4 (5 mM),
NO
3 (3.5 mM), PO
4 (0.005 mM), and Cl (4 mM).
This minimal salts solution (designated SSE) had an ionic strength
of
approximately 0.029 M and was identical to the solution used
in the
desorption and degradation experiments described below.
All treatments
were performed in triplicate, and all preparations
contained sufficient
[9-
14C]phenanthrene for analysis of supernatants by
scintillation counting.
An equilibration time of 48 h was chosen
based on preliminary
kinetic experiments demonstrating constancy of the
aqueous-phase
phenanthrene concentration within several hours. The
amount of
phenanthrene sorbed was calculated by determining the
difference
between the initial and equilibrium concentrations of
aqueous-phase
[
14C]phenanthrene.
All desorption experiments and the subsequent degradation experiments
described below were conducted by using model solid
phases preloaded
with phenanthrene. Approximately 30 g of each
solid was washed
with dH
2O three times to remove fine particles
and dried
overnight at 50°C. Each solid was preequilibrated for
12 h in
dH
2O-methanol (1:1, vol/vol), and then the suspensions
were
spiked approximately 30 times at 15-min intervals with 50-µl
acetone
aliquots, each containing 5.0 mg of phenanthrene plus
0.022 µCi of
[9-
14C]phenanthrene. Phenanthrene additions were made
sequentially
to ensure that phenanthrene concentrations remained below
the
solubility limit during sorption to model solid phases. The
suspensions
were then shaken overnight, after which the solid phases
were
washed with dH
2O. All supernatants were analyzed for
aqueous-phase
[
14C]phenanthrene by scintillation
counting. The solids were then
dried at 50°C for 12 h, and
triplicate subsamples were combusted
with a Harvey biological oxidizer
to quantify and confirm the
amount of sorbed phenanthrene. Mass balance
calculations based
on direct determination of sorbed phenanthrene
contents were in
agreement with the amounts of phenanthrene added to
the solids.
The sorbed phenanthrene concentrations achieved with this
protocol
were approximately 2.5 mg g
1 for AMB and 5.0 mg
g
1 for SM2 and
SM7.
The extent of phenanthrene desorption in the absence of microbial
activity was determined by using preloaded solid phases
in three
different solvent systems: SSE, dH
2O-methanol (1:1,
vol/vol),
and 1% Tween 80 (a surfactant known to enhance the apparent
solubility
of phenanthrene at concentrations above the critical micelle
concentration)
(
21). Triplicate 0.25-g samples of preloaded
solid phases were
added to 25-ml glass test tubes, followed by addition
of 10 ml
of each solvent phase. The tubes were shaken on a
reciprocating
shaker for 28 days; on six sampling dates, the
supernatant was
removed and replaced with fresh solution. All
supernatants were
analyzed for [
14C]phenanthrene by
scintillation counting, and the cumulative release
of phenanthrene was
plotted as the percentage of phenanthrene
desorbed as a function of
time.
Phenanthrene degradation in the presence of model solid
phases.
Initial degradation experiments were conducted by using
several phenanthrene-degrading isolates obtained from previous work in
our laboratories. The purpose of this initial screening was to verify
reduction in phenanthrene bioavailability in the presence of model
solid phases and to demonstrate potential differences in the ability of
microbial isolates to degrade phenanthrene in different sorptive
environments. Individual isolates were obtained from several
contaminated soils by using enrichment techniques (9) and
phenanthrene spray-over plates (19). The additional soils
utilized for bacterial isolation are not described in detail here but
were either from abandoned coal gasification sites (Dover, Ohio) or
creosote-contaminated sites that had previous hydrocarbon contamination
(Gulf Breeze, Fla.). Phenanthrene degradation by nearly 30 isolates was
confirmed by serum bottle radiorespirometry (20). Each
isolate was grown in liquid culture (SSE) for 1 to 2 weeks by using
solid phase phenanthrene as the sole C source. All cultures were
brought to a constant optical density at 500 nm of 0.1 absorbance unit,
and then 10-ml portions were inoculated into serum bottles in the
absence (control) and presence of AMB, SM7, or SM2 solid phase
containing sorbed [14C]phenanthrene. The initial cell
densities, based on correlation of optical densities with CFU, ranged
from 2 × 107 to 9 × 107 CFU
ml
1.
Enrichment culture using model sorptive phases.
The primary
objectives of enrichment experiments were to determine the effects of
phenanthrene sorption on phenanthrene bioavailability, as shown by
reduced degradation rates, and to select for stable microbial
populations that were potentially adapted to low-bioavailability environments. Duplicate batch enrichment cultures were initiated by
using 1 g of soil (from Dover, Ohio, or Libby, Mont.) as inocula in
250-ml culture flasks containing 100 ml of SSE either in the presence
or in the absence of model sorptive phases; this was followed by
incubation at 25 ± 2°C with continuous aeration on an
oscillating shaker (130 rpm). The amount of sorptive phase added to
each enrichment culture (2 g of AMB, 1 g of SM2, or 1 g of
SM7) was determined based on a target equivalent mass of 5.0 mg of
phenanthrene (4.7 mg of C) per flask containing 0.022 µCi of
[14C]phenanthrene. Controls without sorptive phases
also contained 5.0 mg of phenanthrene per flask, which was added as an
acetone solution; when the acetone evaporated, the solid phase
phenanthrene precipitated (water solubility of phenanthrene = 1.8 mg liter
1 [22]). Phenanthrene
degradation was monitored by frequent analysis (every 2 days) of
14CO2, expressed as the percentage of added
[14C]phenanthrene evolved over time. A 10-ml aliquot of
each enrichment suspension (containing both solid and aqueous phases)
was transferred to an identical fresh enrichment vessel just as the
rate of phenanthrene degradation approached zero. The enrichment
cultures were maintained for 5 to 12 transfers to determine the
consistency of phenanthrene degradation rates and the stabilities of
microbial populations selected under such conditions and to reduce any
confounding effects of NOM or DNA added with the initial soil inoculum.
At each transfer time, subsamples were removed and used to isolate
phenanthrene-degrading microorganisms. Additional subsamples were
frozen at
70°C for use in molecular analyses of microbial
communities (6a).
Isolation of phenanthrene-degrading bacteria.
Samples from
enrichment cultures were used to isolate pure cultures of
microorganisms, which were characterized for their abilities to degrade
phenanthrene. Samples were taken from all enrichment cultures that were
actively degrading phenanthrene, 10-fold serial dilutions in sterile
0.85% NaCl were prepared, and 100-µl portions of each dilution were
spread on SSE plates or on yeast extract-peptone-glucose (YEPG) medium
(1, 9). In some cases, AMB and SM7 beads were harvested by
centrifugation, washed with SSE, and then treated in a sterile tissue
homogenizer with SSE at the maximum speed. Dilutions of the
supernatants were spread on agar plates so that bacteria attached to
the bead surfaces could potentially form colonies on the agar medium.
Phenanthrene was sprayed onto the agar plate surfaces, resulting in an
opaque layer (19). Morphologically distinct colonies that
were obtained with higher dilutions and formed clearing zones were
considered potential phenanthrene-mineralizing organisms and were
purified further by passages on either YEPG or SSE agar plates. The
purity of >40 strains was checked microscopically and by molecular
analysis by using denaturing gradient gel electrophoresis (DGGE)
(6a). Bacterial isolates growing either on SSE agar plates
or on YEPG agar plates were examined for their ability to degrade
[14C]phenanthrene by using serum bottle radiorespirometry
as described above. The phenanthrene-degrading isolates were associated
primarily with three DGGE bands that were the predominant bands
produced by the different enrichment cultures (6a).
Phenanthrene degradation rates in the presence and in the absence of
sorptive phases were evaluated in greater detail with three isolates
that produced the dominant DGGE bands observed with SM7 enrichment
(isolate SM7.6.1), control (isolate C4.7), and sand enrichment (isolate S2.1) cultures. Each isolate was pregrown in SSE by using solid-phase phenanthrene as the sole C source for 1 to 2 weeks. The optical density
at 500 nm of each culture was adjusted to a constant value of 0.12 absorbance unit, and then 10-ml portions were inoculated into 250-ml
culture flasks containing 90 ml of fresh SSE and 5 mg of phenanthrene
(0.022 µCi of [14C]phenanthrene) as described above for
control and sand, AMB, and SM7 enrichment cultures. The initial cell
densities, based on correlation of optical density values with numbers
of CFU, ranged from 1 × 107 to 2 × 107 CFU ml
1. Triplicate flasks kept under
constant aeration were monitored for evolution of
14CO2, which was used as a measure of
phenanthrene degradation over time.
 |
RESULTS |
Model solid-phase properties: sorption and desorption.
Sorption isotherms describing the partitioning of phenanthrene
for each model solid phase were highly linear over a range of
equilibrium phenanthrene concentrations (Fig.
1) and were used to calculate sorption
coefficients (log KD), which ranged from 2.3 liters kg
1 for PMMA to 4.2 liters kg
1 for
the nonpolar SM2 phase (Table 2). The log KD
values for soils vary depending on the organic C content but often
range from 2.5 to 3.5 liters kg
1 (23).
The sand used in these experiments showed no appreciable sorption of
phenanthrene (data not shown) and provided a nonsorptive control
surface for microbial attachment. The results of sorption experiments
suggest that the model solid phases which we used were suitable for
achieving a range of phenanthrene bioavailability in enrichment
experiments designed to select for microorganisms specifically adapted
to low-bioavailability conditions. Preliminary experiments using PMMA
as a model sorptive phase showed little reduction in phenanthrene
degradation rate relative to controls when solid-phase phenanthrene was
used. These results were consistent with the fact that the nonporous
PMMA solid used in these experiments exhibited a lower
KD value than other model sorptive phases and the fact that the majority of phenanthrene bound by PMMA was not subject to significant limitations in mass transfer to degrading microorganisms, perhaps due to the lack of microporosity. Consequently, for the purpose of focusing on sorptive phases exhibiting reduced phenanthrene bioavailability, PMMA was not used in any further experiments described here.

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FIG. 1.
Isotherms showing the sorption of phenanthrene by model
organic solids, including PMMA, AMB (a porous weak cation exchanger
with COOH functionality), SM7 (porous acrylic ester beads), and SM2
(porous divinyl benzene beads). The isotherm slopes correspond to
calculated log KD values of 2.3, 3.0, 3.5, and
4.2 liters kg 1 for PMMA, AMB, SM7, and SM2, respectively.
Error bars indicate standard deviations for both x and
y axis variables; where error bars are absent, they fall
within the symbols.
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Desorption of phenanthrene from preloaded solid phases was measured by
using repeated extraction steps over a 28-day period
with SSE, a 1%
Tween 80 solution, or dH
2O-methanol (1:1). The
purpose of
these experiments was to evaluate the extent to which
phenanthrene
desorbed in the absence of microbial growth over
a time period similar
to that used in the enrichment experiments.
When SSE was used, less
than 10% of the sorbed phenanthrene desorbed
from AMB and less than
3% desorbed from the more nonpolar SM7
and SM2 phases (Fig.
2). The amount of phenanthrene desorbed
after
five extractions with SSE would not support the extent of
phenanthrene
degradation observed in enrichment experiments (see
below). Significantly
larger amounts of phenanthrene were desorbed from
AMB in the presence
of 1% Tween 80, indicating that surfactant
micelles were capable
of solubilizing a fraction of the sorbed
phenanthrene (Fig.
2).
However, the cumulative amount of phenanthrene
desorbed from SM7
and SM2 was still less than 10 to 12% of the total
amount of sorbed
phenanthrene. Finally, 100% of AMB-sorbed
phenanthrene was desorbed
with the dH
2O-methanol (1:1)
solution, while only 10 and 25% of
the phenanthrene were desorbed from
SM2 and SM7 solid phases,
respectively (Fig.
2). With each extracting
solution, the amount
of phenanthrene desorbed generally increased as
the polarity of
the solid phase increased (AMB > SM7 > SM2). The results of the
desorption experiments are consistent with the
expected relationships
between sorption coefficients and desorption
kinetic parameters
of nonpolar organic compounds (
3), and
they also show the range
of phenanthrene bioavailability for the solid
phases used.

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FIG. 2.
Cumulative desorption of phenanthrene from preloaded
model solids in three different extracting solutions: SSE, 1% Tween
80, and dH2O-methanol (1:1, vol/vol). The value for each
time point represents desorption into fresh extracting solution. Error
bars represent standard deviations; where error bars are absent, they
fall within the symbols.
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Phenanthrene degradation: initial characterization of
enrichment conditions.
The phenanthrene degradation experiments
conducted with known phenanthrene-degrading bacterial isolates produced
two important results. First, the maximum phenanthrene
degradation rates and extents of degradation for nearly all of the
isolates decreased in the following order: control
sand > AMB > SM7 > SM2. The degradation rates were highest in
control vessels containing no sorptive phase and were nearly zero in
the presence of SM2 (Fig. 3). This order
is consistent with the results of sorption and desorption experiments,
in which phenanthrene sorption rates increased and desorption rates
decreased as the nonpolarity of the sorptive phase increased.

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FIG. 3.
Phenanthrene degradation in the absence (control) and
presence of sorbing solid phases by two bacterial isolates (GB.35,
DC.61) obtained from soils by using phenanthrene spray-over plates.
Control, no sorbed-phase phenanthrene present; AMB, phenanthrene sorbed
to AMB; SM7, phenanthrene sorbed to SM7; SM2, phenanthrene sorbed to
SM2.
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Second, individual isolates exhibited significant variation in their
ability to degrade phenanthrene sorbed to solid phases.
Of nearly 30 phenanthrene-degrading isolates examined, several
mineralized less than
10% of the added phenanthrene when it was
presorbed to SM7 and AMB. An
example of this behavior was observed
with an isolate (GB.35) obtained
from a creosote-contaminated
soil (Gulf Breeze, Fla.), where
phenanthrene degradation was negligible
in the presence of AMB,
SM7, or SM2 (Fig.
3). Other phenanthrene-degrading
microbial isolates
(e.g., DC.61 from Dover, Ohio) exhibited different
capabilities for
degrading phenanthrene sorbed to AMB and SM7,
as shown in Fig.
3.
However, all isolates screened degraded little
or none (<5%) of the
phenanthrene sorbed to SM2, the most nonpolar
phase used in our
experiments. These results suggest that by employing
different solid
phases with different polarities, it may be possible
to structure
enrichment conditions to select for contaminant-degrading
microorganisms with different capabilities for degrading a sorbed
contaminant and to isolate microorganisms specifically adapted
to
low-bioavailability
conditions.
Phenanthrene degradation in enrichment cultures.
We performed
enrichment experiments to simultaneously evaluate phenanthrene
degradation kinetics and microbial community structure for a range of
phenanthrene bioavailabilities. Our primary goal was to identify
microorganisms selected in the enrichment cultures by using both
cultivation-dependent and cultivation-independent methods
(6a). Consequently, repeated transfers to fresh media were
made in an effort to (i) minimize carryover of DNA and NOM associated
with the initial soil inoculum and (ii) develop steady-state microbial
assemblages exhibiting consistent phenanthrene degradation kinetics
over time. Phenanthrene degradation rates in initial enrichment
cultures (1% Dover soil inoculum) followed trends similar to those
observed in individual microbial isolate experiments, where rates of
degradation were inversely correlated with the phenanthrene sorption
coefficients of the solids used in the enrichment cultures (Fig.
4). After subsequent transfers into fresh
enrichment media, the preparations continued to exhibit consistent
trends in degradation rates as a function of phenanthrene
bioavailability (i.e., the order of the degradation rates was as
follows: control
sand > AMB > SM7). Lag phases of
2 to 10 days were observed in the initial enrichment cultures
containing AMB and SM7 when the Dover soil was used, but lag phases
were generally nonexistent after subsequent transfers (Fig. 4),
suggesting that these enrichment cultures selected for stable
phenanthrene-degrading microbial assemblages. In the SM2
enrichment cultures, less than 5% of the phenanthrene added was
degraded during the initial enrichment period, and less than 1% was
degraded after subsequent transfers. These enrichment culture
experiments were not continued due to insufficient phenanthrene
degradation and due to a lack of sufficient biomass to permit molecular
analysis of microbial populations.

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FIG. 4.
Degradation of phenanthrene obtained with a Dover soil
inoculum in batch enrichment cultures grown in the absence (control)
and in the presence of sand, AMB, SM7, and SM2 sorptive phases. Results
are shown for selected transfers and indicate the development of
consistent patterns for the phenanthrene degradation rate as a function
of time and as a function of solid-phase polarity. Error bars represent
one standard deviation.
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The effects of sorptive phases on phenanthrene degradation rates when
Libby soil was used were consistent with the results
obtained with
Dover soil. Initially, the phenanthrene degradation
rates were higher
in SM7 than in AMB enrichment cultures (Fig.
5). An apparent lag phase extending 8 days into the first transfer
was observed prior to rapid degradation of
phenanthrene in the
AMB enrichment culture. Although subsequent
transfers continued
to show short lag phases for AMB enrichment
cultures, by the fourth
transfer the phenanthrene degradation rates
were consistently
following the order control

sand > AMB > SM7, which was similar
to the order observed with the Dover
soil. Maximum phenanthrene
degradation rates averaged for several
transfers (zero to four
transfers) revealed consistent and
statistically significantly
different trends for enrichment conditions
for both the Dover
and Libby soils (Table
3).

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FIG. 5.
Degradation of phenanthrene obtained with a Libby soil
inoculum in batch enrichment cultures grown in the absence (control)
and presence of different phenanthrene sorptive phases. Results are
shown for selected transfers and indicate the development of consistent
patterns for the phenanthrene degradation rate as a function of time
and as a function of solid-phase polarity. Error bars represent one
standard deviation.
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|
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TABLE 3.
Maximum phenanthrene degradation rates in enrichment
cultures inoculated with two contaminated soils (from Dover, Ohio,
and Libby, Mont.), in which a constant mass of phenanthrene was
present either in the absence of sorptive phases (control and sand) or
in the presence of sorptive phases (AMB, SM7, and SM2)
|
|
Phenanthrene degradation by isolates obtained from enrichment
cultures with different bioavailabilities.
More than 40 phenanthrene-degrading bacterial isolates were cultivated from the
model enrichment cultures in an effort to identify important species
present in all treatments. A subset of these isolates representing two
of the primary populations associated with control and SM7 enrichment
cultures (6a) was used to test the hypothesis that organisms
selected under sorptive conditions (such as SM7 cultures) may differ in
the ability to degrade sorbed-phase phenanthrene from organisms
isolated under nonsorptive conditions. A comparison of representative
isolates obtained from control (strain C4.7), sand (strain S2.1), and
SM7 (strain SM7.6.1) enrichment cultures (Fig.
6) showed that isolates obtained from
nonsorptive enrichment cultures degraded phenanthrene more slowly in
the presence of SM7 than did isolates obtained from SM7 enrichment
cultures. The maximum phenanthrene degradation rates in control
enrichment cultures containing solid-phase phenanthrene were 8.8 µmol
day
1 for isolate C4.7, 3.2 µmol day
1 for
isolate S2.1, and 2.4 µmol day
1 for isolate SM7.6.1
(Fig. 6). These results show that isolates SM7.6.1 and S2.1 exhibited
slower growth kinetics in the absence of AMB or SM7 than isolate C4.7.
In the presence of the SM7 sorptive phase, the maximum phenanthrene
degradation rates declined for all isolates. However, the reductions in
degradation rates caused by reduced phenanthrene bioavailability
varied considerably among isolates. This was best illustrated by
normalizing for each isolate the maximum phenanthrene degradation rate
in the presence of SM7 to that in the control environment. When this
was done, the comparison should have factored out simple
differences in microbial growth rates among isolates when no
constraints on phenanthrene bioavailability were present.
Sorption of phenanthrene to SM7 reduced the degradation rate by a
factor of 2 for isolate SM7.6.1. In contrast, the sorptive phase
reduced the rates of phenanthrene degradation approximately 10- to
15-fold for isolates C4.7 and S2.1. These results indicate that
sorption of phenanthrene by organic phases constitutes an important
environmental constraint for certain microorganisms, providing a basis
for possible selection of different species in heterogeneous soil and
sediment microenvironments. Although we have not examined the
underlying mechanisms responsible for the differences among the
isolates, we hypothesize that isolates such as SM7.6.1 are better
adapted to sorptive environments than isolates C4.7 and S2.1.

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FIG. 6.
Phenanthrene degradation in the absence (control) and
presence of sand, AMB, and SM7 solid phases by Dover soil isolates
obtained from either SM7 (SM7.6.1), control (C4.7), or sand (S2.1)
enrichment cultures. Error bars represent one standard deviation.
|
|
 |
DISCUSSION |
Past research focusing on the effects of sorption on degradation
of organic contaminants has generally been conducted by using microorganisms isolated under nonsorptive enrichment conditions (4, 10, 11, 26, 30, 33). It has often been concluded that a
sorbed contaminant is not directly available for microbial degradation
and that desorption into the aqueous phase is necessary for microbial
uptake and subsequent degradation. It is thought that in such
situations the contaminant desorption rate is the rate-limiting step
for microbial degradation. However, recent work suggests that
microorganisms vary in their abilities to degrade substrates bound to
NOM or nonpolar solid phases (4, 10, 31). Consequently,
conclusions concerning rates of microbial utilization of a sorbed
substrate are likely dependent on the specific microbial isolate.
Moreover, enrichments using sorptive phases to select for
microorganisms specifically adapted to low-bioavailability conditions
may be useful for identifying species that are important in soil and
sediment environments and for elucidating mechanisms important for
accessing sorbed-phase contaminants.
In the present work, we have shown that phenanthrene-degrading
microbial isolates obtained by using canonical enrichment approaches (i.e., phenanthrene spray-over plates [19]) vary in
their abilities to degrade phenanthrene sorbed by organic solid phases
intended to simulate NOM. Some isolates obtained by using nonsorbed
phenanthrene as the sole carbon source did not degrade appreciable
amounts of phenanthrene sorbed to AMB (a weak cation-exchange phase
with carboxylic acid functionality) or SM7 (acrylic ester
functionality). For isolates capable of degrading phenanthrene in the
presence of sorbing phases, degradation rates were generally inversely related to phenanthrene sorption. These results are consistent with
those reported by others (4, 11, 13, 33) showing that
sorption of nonpolar compounds to model solid phases reduced the
degradation rates. Recently, Tang et al. (31) utilized
sorptive environments to select microorganisms with enhanced abilities to mineralize sorbed PAHs.
In this paper and the accompanying paper (6a) we describe
enrichment experiments designed to evaluate the relationships among
phenanthrene sorption, phenanthrene degradation, and microbial selection. Phenanthrene degradation rates were monitored under four
different enrichment conditions for numerous transfers following initial inoculation with two hydrocarbon-contaminated soils. Microbial populations selected in these enrichment cultures exhibited
consistent patterns of phenanthrene degradation kinetics after several
transfers to fresh media. An inverse relationship between the
phenanthrene degradation rate and phenanthrene sorption to model
solid phases was observed in enrichment cultures prepared with both
contaminated soils (Fig. 4 and 5). In contrast to the degradation rates
in the presence of SM2, the degradation rates in the presence of AMB
and SM7 were much higher than would have been predicted from the rates
of phenanthrene desorption in the absence of microorganisms (compare
the percentage desorbed as shown in Fig. 2 to the amount mineralized as
shown in Fig. 4 and 5). Weissenfels et al. (33) observed no
degradation of anthracene sorbed on a resin similar to SM2 (XAD-2) by
an acclimated mixed bacterial culture known to degrade several PAHs.
Potential mechanisms of microbially facilitated desorption in SM7 and
AMB environments include solubilization of the contaminant via
production of biosurfactants and development of steep concentration
gradients between the solid phase and interfacial phenanthrene
(10, 12, 13, 32). It has also been suggested that
microorganisms capable of attachment exhibit higher rates of
degradation of a sorbed substrate (10, 12, 13). An
examination of selected solid phases by scanning electron microscopy
confirmed the presence of attached microorganisms in both AMB and SM7
enrichment cultures, suggesting that at least one member of each
enriched culture was present on bead surfaces. However, further work
will be necessary to evaluate the mechanisms responsible for the
different degradation behaviors of isolates obtained from enrichment
cultures in the presence and in the absence of sorptive phases and to
determine whether other factors, such as surface characteristics of the solid phases, may play a role in the selection of
phenanthrene-degrading microorganisms.
A subset of microbial isolates obtained from the enrichment cultures
was used in experiments to compare the rates of phenanthrene degradation by individual isolates for the same range of phenanthrene bioavailabilities. We observed that one of the primary isolate types
(6a) that originated from the SM7 enrichment cultures (SM7.6.1) degraded phenanthrene more rapidly in the presence of SM7
than isolates obtained from control enrichment cultures
containing no sorptive phase (C4.7, S2.1). Our results are
consistent with those of Tang et al. (31) showing that
sorption of phenanthrene has an important effect on selection of
microbial species with greater adaptation to low-bioavailability
environments. In addition, our work shows that the range of
phenanthrene bioavailabilities obtained by using solid phases with
different sorptive properties provides a useful approach for
determining the effects of contaminant sorption on microbial selection
and for cultivating and characterizing microorganisms that may have
more relevance in natural environments. Furthermore, in the
accompanying paper (6a) we describe molecular analyses that
were used to corroborate the finding that different microbial
assemblages were obtained from enrichment cultures with different
degrees of phenanthrene sorption.
 |
ACKNOWLEDGMENTS |
We appreciate support from the Army Corps of Engineers Waterways
Experiment Station (contract DACA39-95-K-0003), the National Science
Foundation (grant DEB-9729857), the German Research Community (DFG),
the Max Planck Society, and the Montana Agricultural Experiment Station
(projects 104398 and 911296).
We thank Ron Doughten for assistance with the sorption isotherm
experiments, Kim Anderson for technical support, and Eric Kern, Greg
Colores, and anonymous reviewers for constructive comments.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Land Resources and Environmental Sciences, Montana State University, P.O. Box 173120, Bozeman, MT 59717-0312. Phone: (406) 994-7060. Fax:
(406) 994-3933. E-mail: binskeep{at}montana.edu.
Present address: NRMRL, US EPA, Cincinnati, OH 45268.
Present address: Max-Planck-Institut für Terrestrische
Mikrobiologie, D-35043 Marburg, Germany.
 |
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