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Applied and Environmental Microbiology, July 2000, p. 2783-2790, Vol. 66, No. 7
0099-2240/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Fate of Nitrate Acquired by the Tubeworm
Riftia pachyptila
Peter R.
Girguis,1,*
Raymond W.
Lee,2
Nicole
Desaulniers,1
James J.
Childress,1
Mark
Pospesel,3
Horst
Felbeck,3 and
Franck
Zal4
Marine Science Institute, University of
California at Santa Barbara, Santa Barbara, California
931061; School of Biological Sciences,
Washington State University, Pullman, Washington
99164-42362; Scripps Institution of
Oceanography, University of California at San Diego, La Jolla,
California 92093-02023; and Station
Biologique de Roscoff, 29682 Roscoff Cedex, France4
Received 18 January 2000/Accepted 11 April 2000
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ABSTRACT |
The hydrothermal vent tubeworm Riftia pachyptila lacks
a mouth and gut and lives in association with intracellular,
sulfide-oxidizing chemoautotrophic bacteria. Growth of this tubeworm
requires an exogenous source of nitrogen for biosynthesis, and, as
determined in previous studies, environmental ammonia and free amino
acids appear to be unlikely sources of nitrogen. Nitrate, however, is present in situ (K. Johnson, J. Childress, R. Hessler, C. Sakamoto-Arnold, and C. Beehler, Deep-Sea Res. 35:1723-1744, 1988), is
taken up by the host, and can be chemically reduced by the symbionts
(U. Hentschel and H. Felbeck, Nature 366:338-340, 1993). Here we
report that at an in situ concentration of 40 µM, nitrate is acquired by R. pachyptila at a rate of 3.54 µmol g
1
h
1, while elimination of nitrite and elimination of
ammonia occur at much lower rates (0.017 and 0.21 µmol
g
1 h
1, respectively). We also observed
reduction of nitrite (and accordingly nitrate) to ammonia in the
trophosome tissue. When R. pachyptila tubeworms are exposed
to constant in situ conditions for 60 h, there is a difference
between the amount of nitrogen acquired via nitrate uptake and the
amount of nitrogen lost via nitrite and ammonia elimination, which
indicates that there is a nitrogen "sink." Our results demonstrate
that storage of nitrate does not account for the observed
stoichiometric differences in the amounts of nitrogen. Nitrate uptake
was not correlated with sulfide or inorganic carbon flux, suggesting
that nitrate is probably not an important oxidant in metabolism of the
symbionts. Accordingly, we describe a nitrogen flux model for this
association, in which the product of symbiont nitrate reduction,
ammonia, is the primary source of nitrogen for the host and the
symbionts and fulfills the association's nitrogen needs via
incorporation of ammonia into amino acids.
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INTRODUCTION |
Riftia pachyptila, a
hydrothermal vent tubeworm, is a conspicuous member of the hydrothermal
vent communities found along the East Pacific Rise, the Guaymas Basin,
and the Southern East Pacific Rise (33). This mouthless,
gutless vestimentiferan worm received much attention when researchers
found that it has chemoautotrophic bacterial symbionts in its trunk (in
an organ referred to as the trophosome) (2, 8a). The
symbionts were determined to be carbon-fixing, sulfide-oxidizing
chemoautotrophs (10) that are present at densities up to
3.7 × 109 cells g of trophosome
1
(2, 29). The symbionts are far from the external milieu, and
the metabolites required to sustain sulfide-driven carbon fixation must
be provided via the host. R. pachyptila thrives at the
interface of vent and bottom-water mixing; thus, its plume (gill) has
variable contact with both the cold bottom water and the warmer vent
effluent, and the organism has simultaneous access to both reduced and
oxidized metabolites (4).
In previous studies workers have focused on the suite of biochemical
and physiological adaptations that result in acquisition, storage, and
elimination of the reduced and oxidized substrates and end products of
carbon fixation and sulfide oxidation (1, 13, 14). However,
for growth to occur there must be an exogenous source of nitrogen for
biosynthesis, and the absence of a digestive tract in the worm
precludes the possibility of particulate ingestion (18).
Accordingly, nitrogen must be obtained through absorption from the
environment. The in situ concentrations of free amino acids at
hydrothermal vent sites along the East Pacific Rise are extremely low
(<200 pM) (17), and the results of
15N
stable isotope studies of R. pachyptila tissues have
indicated that the source of nitrogen for the tubeworm-bacterium
association is not organic (30). In addition, the ammonia
concentrations at sites along the East Pacific Rise are low (3 µM)
(17), although the ammonia concentrations in the Guaymas
Basin can be as high as 15 mM in the sediments around the tubeworms
(34). Shipboard studies of intact associations have
suggested that R. pachyptila collected from sites along the
East Pacific Rise does not take up ammonia in detectable quantities
(21). Nitrate, however, occurs in the cold bottom water at
in situ concentrations of ca. 40 µM (17), and preliminary
studies have suggested that nitrate may be taken up by intact
associations (21). R. pachyptila, like all
heterotrophic metazoans, is not capable of metabolizing nitrate.
Reduction of nitrate by bacteria, however, is common among the
chemoautotrophs, such as the filamentous sulfur bacteria (27). In one previous study of isolated R. pachyptila symbionts, the workers demonstrated that nitrate was
reduced to nitrite (16). The authors posited that nitrate
reduction by the symbionts is a means of sustaining the oxidative
requirements of the symbionts during periods of environmental
hypoxia. They found no evidence that ammonia was formed during
reduction of nitrate, and the possibility that this process could
provide a substantial source of reduced nitrogen for the association
was not considered. However, in another study the researchers found
activities of ammonia assimilatory enzymes in the symbionts of R. pachyptila (22), suggesting that assimilation of
ammonia may be the predominant source of nitrogen for symbiont biosynthesis.
No one has quantified the rates of nitrogenous metabolite flux or the
rates of flux for other major metabolites by an intact association
previously. This is due in large part to the difficulty of maintaining
live hydrothermal vent fauna in the laboratory. Our high-pressure
respirometry system, which is the result of years of development
(20), allows us to maintain animals and to simultaneously
measure metabolite flux in pressurized flow-through aquaria. This
system also allows us to determine that tubeworms are in
"autotrophic" balance (i.e., that they take up inorganic metabolites and eliminate proton equivalents). This system differs from
the systems used in previous studies, in which the worms were
maintained at atmospheric pressure or at in situ pressures in aquaria
filled with surface seawater containing dissolved gases and compounds
at concentrations that were not typical of the concentrations found in
situ and thus did not support autotrophy.
In this study, we investigated nitrate uptake by intact R. pachyptila during exposure to external nitrate concentrations
ranging from 0 to 550 µM. During our experiments, we paid particular
attention to the rate and duration of nitrate uptake at in situ nitrate concentrations, as well as the concomitant rates of nitrogenous metabolite loss to the environment. We also examined the relationship among nitrate uptake, carbon uptake, and oxygen uptake when different external nitrate regimens were used. In addition, we investigated whether formation of ammonia was the result of nitrite (and accordingly nitrate) reduction in trophosome tissue.
In a previous study of nitrate reduction by the symbionts
(16), the authors demonstrated that the symbionts were able
to utilize nitrate, but they did not elucidate the role of nitrate reduction in respiration (dissimilatory nitrate reduction) and biosynthesis (assimilatory nitrate reduction). In this study, we
examined the stoichiometry of nitrate reduction and, by comparing the
concomitant rates of oxygen uptake and sulfide uptake, also examined
the potential role of nitrate reduction in respiration. We posit that
reduction of nitrate, which may be assimilatory or dissimilatory, leads
to the formation of ammonia, which is assimilated into amino acids by
the symbionts and, potentially, by the host.
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MATERIALS AND METHODS |
Animal collection and maintenance.
Tubeworms were collected
from hydrothermal vent sites along the East Pacific Rise (12°48'N,
103°56'W and 9°50'N, 104°18'W) at a depth of about 2,600 m
during expeditions in April 1996, November 1997, and November 1998. Worms were collected daily, brought from depth in a thermally insulated
container (25), and immediately placed into flow-through,
high-pressure respirometer aquaria (20). Unless otherwise
stated, all experiments were conducted in high-pressure aquaria at
12°C and 27.5 kPa. Recent modifications to the high-pressure
respirometry system include (i) the development of 316 stainless
steel-reinforced acrylic sleeves, which permit prolonged operation at
pressures up to 34 kPa, (ii) a gas extractor (fabricated of
polysulfone) for "stripping" dissolved gases from the aquarium
effluents into a helium stream for analysis by membrane inlet mass
spectroscopy, and (iii) a LabView-based computer program for data
acquisition and system control.
In the experiment in which we examined the relationship between nitrate
uptake and environmental oxygen tension (see below), we used worms
which had been collected 2 days previously and had been kept in
"maintenance" aquaria (14). Worms in these aquaria were
maintained under in situ vent conditions (total concentration of all
ionic species of inorganic carbon [
CO2], 5 to 6 mM;
total concentration of all ionic species of sulfide
[
H2S], 250 to 600 µM; O2 concentration,
100 to 400 µM; NO3
concentration, 40 µM;
temperature, 12°C; pressure, 27.5 kPa). The
CO2,
H2S, and O2 uptake values for these worms
and for freshly caught worms did not differ (P = 0.578, P = 0.351, and P = 0.376, respectively, as
determined by Mann-Whitney tests; number of worms in each group, 4).
Determination of flux rates by intact associations.
In all
of the experiments in which we examined flux rates in intact
associations, one to three tubeworms weighing between 5 and 15 g
each were placed into two of the high-pressure respirometry system
aquaria. A third vessel, which served as a control, did not contain
tubeworms. To simulate the conditions found in situ, filtered seawater
(pore size, 0.2 µm) was pumped with a metering pump (Cole-Parmer,
Inc.) into an acrylic gas equilibration column and bubbled with
CO2, H2S, O2, and N2 or
He to obtain in situ concentrations. Mass flow controllers (Sierra
Instruments, Inc.) were used to regulate the gas flow into the
equilibration column. The seawater pH was maintained between 6.2 and
6.5 with a proportional pH controller (Prominent Industries, Inc.) that
controlled two metering pumps that pumped 1 M NaOH and 1 M HCl. A 5 mM
sodium nitrate solution (sodium nitrate dissolved in filtered seawater [pore size, 0.2 µm]) was also pumped into the equilibration column with a metering pump (Prominent Industries, Inc.) at various rates, which resulted in specific seawater nitrate concentrations between 0 and 550 µM (the seawater used was obtained from the surface and did
not contain nitrate at concentrations within the limits of our method
of detection [ca. 500 nM]). The resulting seawater was pumped from
the equilibration column into each aquarium by using three
high-pressure pumps (Hastelloy C diaphragms and check valves; 316 stainless steel pump heads; Lewa America, Inc.). The temperatures in
the aquaria were maintained at 15°C by immersing the aquaria in a
circulating water bath. The pressure in the aquaria was maintained at
27.5 kPa (4,000 lb/in2) by using pneumatically charged or
spring-loaded backpressure valves (Circle Seal, Inc.). Changes in the
dissolved gas concentrations in the vessel effluents were analyzed with
a residual gas analyzer-mass spectrometer (Hiden Analytical Inc.).
Changes in the seawater nitrate and nitrite concentrations were
analyzed by performing a spectrophotometric analysis of discrete water
samples (17, 23). Seawater urate (uric acid) concentrations
were determined by a quantitative enzymatic assay (11).
Seawater ammonium concentrations were determined by performing a flow
injection analysis with discrete water samples (35). Before
experiments were performed, all tubeworms were maintained in
respirometer aquaria under in situ conditions until autotrophy was
established. This typically required between 12 and 24 h. An
autotrophic worm was defined as a worm which exhibited net inorganic
carbon, oxygen, and sulfide uptake from the environment, as well as net
elimination of proton equivalents into the environment.
To determine the nitrogenous metabolite flux rates of
R. pachyptila, three worms collected during the April 1996 expedition
(designated the HOT 96 expedition) were placed into two of the
pressurized aquaria and maintained until they exhibited autotrophy.
Sodium nitrate was added to the incurrent aquarium seawater via
the
equilibration column at various rates over several hours in
order to
obtain a series of final seawater nitrate concentrations
between 0 and
550 µM. Worms were kept at each incremental step
until their
inorganic carbon, oxygen, sulfide, and proton flux
rates stabilized,
typically 10 to 12 h. Other than the variation
in the external
nitrate concentrations, the worms were kept under
constant in situ
conditions for the duration of the experiment
(

CO
2, 5 mM;

H
2S, 250 µM; O
2 concentration, 150 µM; pH 5.6; temperature,
12°C; pressure, 27.5 kPa). Water samples
were collected from all
three aquaria at least hourly and used for
nitrate, nitrite and
ammonia
analyses.
To examine the relationship between nitrate uptake and oxygen uptake,
four worms collected during the November 1997 expedition
(designated
the HOT 97 expedition) were placed in two of the pressurized
aquaria
and maintained until they exhibited autotrophy. The worms
were exposed
to 50 µM nitrate and 95 µM dissolved oxygen for 30
h.
Subsequently, the worms were exposed to 150 µM nitrate and
95 µM
dissolved oxygen for 36 h. The flow of oxygen to the equilibration
column was then turned off, and the concentrations of dissolved
oxygen
in the aquaria decreased to less than 3 µM (below the limit
of
detection by gas chromatography [
3]). Samples of the
aquarium
effluents were taken from all three aquaria and used for
nitrate,
nitrite, and ammonia
analyses.
To examine the relationship among nitrate uptake, carbon dioxide
uptake, sulfide uptake, and oxygen uptake, three worms collected
during
the November 1998 expedition (designated the LARVE 98 expedition)
were
placed in two of the pressurized aquaria and maintained in
nitrate-free
seawater for 2 days. The surface seawater did not
contain nitrate at
concentrations within the limit of detection
(ca. 500 nM). The
concentrations of all other compounds were maintained
at in situ
values. Nitrate was then added to the incurrent seawater
in order to
obtain a nitrate concentration of 100 µM in the aquaria.
The worms
were maintained under these conditions for 3 days, during
which the
dissolved gas and nitrate concentrations were varied
incrementally one
at a time. The seawater dissolved gas concentrations
were measured, and
samples of aquarium effluents were taken from
all three aquaria and
used for nitrate, nitrite, and ammonia
analyses.
To examine the relationship between nitrate uptake and inorganic carbon
uptake, four worms collected during the November 1997
expedition (the
HOT 97 expedition) were placed in two of the pressurized
aquaria and
maintained in the presence of three different nitrate
concentrations
(56, 154, and 640 µM) for 4 days. The concentrations
of all other
compounds were maintained at in situ values. The
dissolved gas
concentrations were measured, and samples of aquarium
effluents were
taken and used for nitrate and ammonia
analyses.
At the end of each experiment, the worms were removed from the aquaria,
quickly separated from their tubes, and weighed with
a
motion-compensated balance (
5). All rates and other
parameters
were expressed in terms of wet weight. The tubeworms were
then
dissected, and tissue samples were promptly frozen in liquid
nitrogen
for later analysis. In most cases, the empty worm tubes were
returned
to the pressure vessel and subjected to the same experimental
conditions to determine what fraction, if any, of the observed
flux
rates could be attributed to bacterial growth or other phenomena
associated with the
tubes.
Determination of trophosome nitrogenous metabolite concentrations
in vessel-maintained worms.
To examine the changes in tissue
nitrogenous metabolite concentrations, 11 R. pachyptila
tubeworms collected during the April 1996 expedition (the HOT 96 expedition) were kept in seawater that contained no nitrate for 2 days
(all other conditions were in situ conditions; i.e.,
CO2, 5 mM;
H2S, 250 µM; O2
concentration, 150 µM; pH 5.6; temperature, 12°C; pressure, 27.5 kPa). Six worms were removed for analysis. The nitrate was added to a
final concentration of 53 µM, and the remaining worms were maintained
under the conditions described above for an additional 2 days.
Trophosome samples obtained from vessel-maintained worms were quickly
dissected and analyzed on the ship or were frozen in liquid nitrogen
for later analysis. The trophosome samples used for nitrate analyses
were prepared by homogenizing the tissue by using a Dounce ground-glass
homogenizer and M9 bacterial medium (31). The nitrate
concentrations in the trophosome samples were determined by performing
a bacterial bioassay in which reduction of nitrate (in the trophosome
homogenate) to nitrite by Escherichia coli was coupled to
spectrophotometric determination of nitrite concentrations
(28). The trophosome samples used for ammonia analysis were
prepared by homogenizing the tissue in a ground-glass homogenizer with
an equal volume of methanol, centrifuging the homogenate at
11,000 × g to remove the particulates, and diluting
the preparation 1:1 with deionized water. The homogenate was then
analyzed by performing a flow injection analysis (35). The
trophosome samples used for urate analysis were prepared by
homogenizing the tissue in a ground-glass homogenizer by using 2 parts
of 1 M perchloric acid for each 1 part of tissue, neutralizing the
homogenate with an equal volume of 2.5 mM potassium bicarbonate, and
centrifuging the preparation at 11,000 × g to remove
the precipitate. The supernatant was analyzed by performing a
quantitative enzymatic analysis of the uric acid content
(11).
Determination of nitrogenous metabolite production in excised
trophosomes.
To determine the product of nitrite reduction, we
examined the simultaneous disappearance of nitrite and production of
ammonia by performing assays in which we used excised trophosome tissue extracts obtained from R. pachyptila collected during the
November 1997 expedition (the HOT 97 expedition). Extracts were
prepared as follows. A trophosome from R. pachyptila was
homogenized with a Dounce ground-glass homogenizer by using 5 volumes
of ice-cold 100 mM Tris buffer-2.5 mM MgCl2-1 mM
mercaptoethanol (pH 7.5), and the extract was sonicated on ice and
centrifuged for 10 min at 11,000 × g. Supernatants
from such extracts were used in subsequent assays. A 50-µl portion of
supernatant was added to a 1-ml (final volume) reaction mixture
containing 100 mM phosphate, 0.2 or 5 mM sodium nitrite, and 0.2 mM
benzyl viologen (an artificial electron donor) at pH 7.4 and 25°C.
The reaction was initiated by reducing benzyl viologen by adding sodium
dithionite to a final concentration of 2 mM. Nitrite concentrations
were determined spectrophotometrically after sulfanilamide and
naphthylethylenediamine (12) were added. Ammonia
concentrations were measured by performing a flow injection analysis
(35).
 |
RESULTS |
Rates of metabolite flux.
Data obtained from our HOT 96 expedition experiments showed that nitrate uptake by R. pachyptila was strongly correlated with the seawater nitrate
content during exposure to nitrate concentrations between 50 and 500 µM (Fig. 1A) (R2 = 0.903; P < 0.0001). The correlation between the seawater
nitrate concentration and nitrate uptake remained linear for seawater nitrate concentrations up to 550 µM. During exposure to nitrate concentrations resembling in situ concentrations (e.g., 50 µM nitrate), the average rate of nitrate uptake by R. pachyptila was 3.54 ± 0.403 µmol g
1
h
1 (number of seawater samples, 19).

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FIG. 1.
(A) Nitrate uptake by R. pachyptila as a
function of the external nitrate concentration. (B) Nitrite and ammonia
excretion as a function of nitrate uptake by R. pachyptila.
All rates are expressed in terms of wet weight.
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Nitrate uptake resulted in the concomitant appearance of nitrite and
ammonia in the experimental vessel effluents compared
to the control
vessel effluents (Fig.
1B). The appearance of nitrite
and ammonia in
the experimental vessels was attributed to nitrate
reduction by the
symbionts of
R. pachyptila; this appearance of
nitrite and
ammonia in the vessel seawater is referred to below
as nitrite loss and
ammonia loss by the tubeworm. At environmentally
relevant seawater
nitrate concentrations, nitrite loss and ammonia
loss occurred at rates
of 0.017 and 0.21 µmol g
1 h
1,
respectively (Fig.
1B). The rate of nitrite loss by
R. pachyptila was always low and was not correlated with nitrate
uptake (
R2 = 0.016;
P = 0.813) (Fig.
1B), while the rate of ammonia loss
was correlated with nitrate uptake
(
R2 = 0.758;
P < 0.0001) (Fig.
1B).
The rates of nitrite loss and
ammonia loss by
R. pachyptila
were typically 2 and 1 orders of
magnitude, respectively, less than the
rates of nitrate uptake
by
R. pachyptila (Fig.
1B). In two
experiments performed during
our HOT 97 and HOT 98 expeditions,
R. pachyptila tubeworms were
maintained in the presence of
50 µM nitrate seawater concentrations
for more than 60 h. During
that time, nitrate uptake by
R. pachyptila remained high
while nitrite and ammonia loss by
R. pachyptila remained low. In addition, the levels of dinitrogen in the experimental
vessels were not significantly different than the level in the
control
(
P = 0.802, as determined by the Student
t test).
Data obtained during the HOT 97 expedition showed that, during exposure
for 30 h, increasing the seawater nitrate concentration
from 50 to
150 µM did not result in a significant increase in
the average rate
of nitrate uptake by
R. pachyptila (it increased
from
3.56 ± 0.66 to 3.95 ± 0.54 µmol g
1
h
1) (Fig.
2). Reducing the
seawater dissolved oxygen concentration
to an undetectable level
resulted in a significant reduction in
the rate of nitrate uptake by
R. pachyptila, to an average value
of 0.77 ± 0.29 µmol g
1 h
1 (Fig.
2).

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FIG. 2.
Nitrate uptake by R. pachyptila when three
different oxygen-nitrate regimens were used. The incurrent
[NO3] and [O2] values are the
concentrations of nitrate and oxygen, respectively, in the seawater.
The numbers in parentheses are the numbers of discrete samples used to
calculate the rates. The error bars indicate standard errors. All rates
are expressed in terms of wet weight.
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R. pachyptila tubeworms collected during the HOT 97 expedition were exposed for 12 h at a time to seawater nitrate
concentrations
of 56, 154, and 640 µM. The rates of nitrate uptake by
the worms
increased as the nitrate concentration increased, while there
was no change in the

CO
2 uptake rate (Table
1). The difference
between the amount of
nitrogen acquired as nitrate and the amount
of nitrogen lost as other
nitrogenous compounds (

N) was the amount
of nitrogen available to
the association. At approximately in
situ nitrate concentrations,

N
was 3.61 µmol of N g
1 h
1. The ratio of

CO
2 uptake to

N was 3.81. This

CO
2
uptake/

N
ratio was similar to the association's C/N ratio (3.91)
(
9).
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TABLE 1.
Rates of inorganic carbon and nitrogenous metabolite
uptake and elimination by R. pachyptila exposed to three
environmental nitrate concentrations
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Data obtained during our LARVE 98 expedition showed that nitrate uptake
was not correlated with changes in seawater sulfide,
oxygen, or
inorganic carbon concentrations (Fig.
3).
During this
same experiment, oxygen uptake by
R. pachyptila
was strongly correlated
with sulfide uptake (
R2 = 0.89).

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FIG. 3.
(A) Inorganic carbon uptake rate versus nitrate uptake
rate. (B) Oxygen uptake rate versus nitrate uptake rate. (C) Sulfide
uptake rate versus nitrate uptake rate. (D) Sulfide uptake rate versus
oxygen uptake rate in R. pachyptila. Nitrate concentrations
were maintained at 100 µM in the aquarium incurrent flows. All rates
are expressed in terms of wet weight.
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Empty tubeworm tubes that were returned to the vessels after worm
removal in order to determine what fractions of the flux
rates were
attributable to bacterial growth exhibited no flux
compared to the
control.
Tissue and seawater nitrogenous metabolite concentrations.
During the HOT 96 expedition, the trophosome nitrate, nitrite, and
ammonia concentrations in R. pachyptila maintained in
aquarium seawater without nitrate were much lower than the
concentrations in worms maintained in the presence of nitrate (Table
2). The urate and dinitrogen
concentrations, however, did not vary significantly when we compared
worms maintained for 2 days with and without nitrate (Table 2).
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TABLE 2.
Concentrations of nitrogenous metabolites in excised
trophosome tissue of R. pachyptila before and during
exposure to 53 µM nitrate
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The concentrations of ammonia in samples of seawater effluent from
pressurized aquaria containing four
R. pachyptila tubeworms
increased significantly during exposure to nitrate (53 µM in the
surrounding seawater) (Table
3). The
concentrations of nitrite
in the seawater effluents, however, did not
vary significantly
between treatments. Urate was not detected in
samples of seawater
effluents obtained from pressurized aquaria
containing four
R. pachyptila tubeworms before and during
exposure to nitrate (Table
3).
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TABLE 3.
Concentrations of nitrogenous metabolites in the seawater
effluents from pressurized aquaria containing four R. pachyptila tubeworms before and during exposure to 53 µM nitrate
in the surrounding seawater
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Reduction of nitrite to ammonia in excised trophosomes.
Experiments conducted during the HOT 97 expedition with trophosome
tissue extracts obtained from R. pachyptila revealed that the ammonia concentration increased after 5 mM nitrite was added. No
increases in the ammonia concentrations were observed in the reaction
mixtures to which nitrite was not added (Fig.
4A). These results indicate that the
level of nitrite reductase activity was approximately 0.78 to 0.85 nmol
mg (fresh weight)
1 min
1 and are consistent
with the hypothesis that a nitrite reductase that reduced nitrite to
ammonia was present. At a nitrite concentration of 200 µM, a decrease
in the nitrite concentration accompanied the production of ammonia
(Fig. 4B). Lower nitrite concentrations did not result in detectable
ammonia production (data not shown).

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FIG. 4.
(A) Assays involving excised trophosomes of R. pachyptila exposed to 5 mM sodium nitrite in Riftia
saline. Increases in the ammonia concentration were observed in the
presence of 5 mM nitrite. No increases in the ammonia concentration
were observed in the reaction mixture containing trophosomes without
added nitrite. (B) Assays involving trophosomes of R. pachyptila exposed to 200 µM nitrite (to determine if ammonia
production was accompanied by a concomitant disappearance of nitrite).
A decrease in the nitrite concentration accompanied the production of
ammonia. NH3, both the NH3 and
NH4+ ionic species of ammonia.
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DISCUSSION |
The most readily available form of inorganic nitrogen in the
hydrothermal vent environment is nitrate (17). In general, there are two possible uses of nitrate by symbiotic bacteria. Nitrate
may be used in lieu of oxygen as a terminal electron acceptor during
respiration (generally referred to as dissimilatory nitrate reduction)
(6). Nitrate may also be reduced and incorporated into amino
acids for biosynthesis (generally referred to as assimilatory nitrate
reduction) (6). Lee and Childress (21)
demonstrated that in R. pachyptila 15N from
15NO3
was incorporated into
organic matter and inferred that the nitrate was reduced to ammonia
before incorporation. The technique which these authors used, however,
does not allow workers to measure the rates or durations of nitrate
uptake into the worm, the concentrations of ammonia and nitrate in the
worm and its symbionts, or the loss of nitrite and ammonia by the worm.
Consequently, Lee and Childress concluded that reduction of nitrate was
the source of the labeled nitrogen, but no definitive inference could
be drawn concerning the mechanism of nitrogen acquisition or utilization.
The previous studies were conducted by using closed systems in which
the conditions (particularly the O2 concentration,
CO2 concentration,
H2S, pH, and temperature)
were often unstable and were far from the optimum conditions for
autotrophic balance in the R. pachyptila symbiosis. Due to
the long lag time for initiation of autotrophy (approximately 24 h), it is certain that these previous studies in which much shorter
incubation times were used did not involve animals in net autotrophic
balance. As indicated above, the experiments described here were
performed by using flowing, pressurized seawater aquaria and worms
which exhibited signs of autotrophy while they were maintained under in
situ conditions.
In our experiments performed with intact associations, we found uptake
of nitrate by R. pachyptila occurs at in situ concentrations of nitrate and that a typical rate of 3.54 ± 0.403 µmol
g
1 h
1 can be sustained for at least 60 h (Fig. 1A). Our experiments were the first experiments in which the
rate of nitrate uptake by an intact vent symbiosis was measured. In a
previous study of isolated R. pachyptila symbionts,
Hentschel and Felbeck showed that nitrate was taken up from the media
at a rate of 10 µM g of protein
1 h
1 (as
determined by the rate of nitrite production) (16). We have
found that fractions of the internal nitrite and ammonia, which occur
only in the presence of nitrate, are eliminated into the external
milieu when R. pachyptila tubeworms are exposed to any
concentration of nitrate (Fig. 1B). The correlation between nitrate
uptake and ammonium elimination suggests that ammonium results from
nitrate reduction and may be the end product of nitrate reduction (Fig.
1B). The lack of a correlation between nitrate uptake and nitrite
elimination and the low levels of nitrite elimination suggest that
nitrite is not a substantial end product of nitrate reduction by the
symbionts (under conditions in which the intact symbiosis exhibits
autotrophy). Our experiments performed with excised trophosome tissue
also showed that ammonia was formed when trophosome tissue was exposed
to nitrite (the product of nitrate reduction and the precursor of
ammonia synthesis) (Fig. 4). Although uric acid was found in the
trophosome and body wall of R. pachyptila, this compound was
not eliminated into the seawater. Dinitrogen assimilation or production
was not detected in either the blood or tissues of R. pachyptila or in the external milieu (Table 2).
Typically, the sum of the rates of elimination for all of the other
nitrogenous metabolites measured did not exceed 10% of the nitrate
uptake rate, even after 60 h of exposure to 40 µM nitrate.
During 60 h of exposure to 40 µM nitrate, the
N was equivalent to
a stoichiometric gain of 2.2 µmol of nitrogen g
1
h
1. Although this difference might be attributed to
disequilibrium of nitrate pools, our measurements of the tissue nitrate
pools suggest that this is unlikely. The nitrate concentrations in the trophosomes of R. pachyptila maintained in nitrate-depleted
water were 27.8 ± 12.2 µmol g (wet weight) of
tissue
1, which increased to 394.8 ± 84.2 µmol g
(wet weight) of tissue
1 when 100 µM nitrate was added
to the aquarium seawater (Table 2). At the observed rate of nitrate
uptake by R. pachyptila (when it was exposed to 100 µM
nitrates), a typical 50-g worm required roughly 2.5 h to
accumulate 400 µM nitrate in its trophosome. Our observation that the
rates of uptake and elimination mentioned above can be sustained for at
least 60 h suggests that the observed differences are not
attributable to storage of nitrate. Thus, there is a "sink" for
nitrogenous compounds that we believe represents the fraction of
ammonia that is assimilated into amino acids. The similarity between
the CO2 uptake/NO3 uptake ratio of R. pachyptila and the C/N ratio of the association (9) is
evidence that nitrogen is acquired at rates sufficient to meet the
biosynthetic needs of this association (Table 1). In addition,
activities of the enzymes responsible for incorporation of ammonia
(22) have been found in the trophosome, indicating that
there is a capacity to assimilate ammonia.
If dissimilatory nitrate reduction is the major mode of symbiont
respiration, the rate of uptake of nitrate must be sufficient to meet
the demands of the symbionts for an oxidant. Accordingly, one would
expect the nitrate uptake rate to be relatively high, comparable to the
oxygen uptake rate. One would also expect the availability of nitrate,
which is governed both by the rate of nitrate uptake and by the storage
of nitrate in the tissues, to affect symbiont oxidation of sulfide and
fixation of carbon. If, however, the primary role of nitrate reduction
is to be a source of nitrogen for biosynthesis, three major criteria
must be met. First, nitrate uptake by R. pachyptila must
occur at in situ seawater nitrate concentrations. Second, nitrate
reduction by the symbionts must lead to formation of ammonia or another
compound that can be assimilated by the symbionts and potentially by
the host. Third, there must be a flux of nitrogen into the association
(determined by the net flux of all nitrogenous metabolites) at a rate
sufficient to support the biosynthetic needs of the association.
In a previous study Hentschel and Felbeck suggested that nitrate
reduction by the symbionts sustains the association through periods of
environmental hypoxia (16). It is known that dissimilatory nitrate reduction typically occurs in anoxic environments, and given
the substantial oxygen uptake by the association and the high
concentration of hemoglobin in the blood, it is unlikely that the
internal milieu is anoxic. Furthermore, if reduction of nitrate were
solely for respiration, one would expect an approximately 1:1
stoichiometric influx and efflux of nitrogenous compounds from the
association. The rates of nitrogenous compound efflux measured in our
experiments never approached the intake rates, even during and prior to
several hours of experimentally induced hypoxia. Even if all of the
nitrate is used by the symbionts for respiration and if it is assumed
that the redox potential is equal to that of oxygen, the reduction of
nitrate for respiration could at best meet 20 to 25% of the
respiratory needs of the symbionts (as determined by comparison to the
fraction of oxygen which is utilized by the symbionts during oxidation
of sulfide) (Fig. 3). Additional compelling evidence is the strong
correlation between sulfide uptake and oxygen uptake, which
demonstrates the tight coupling between sulfide oxidation (via oxygen)
by the symbionts. (Fig. 3D) and the lack of coupling between nitrate
uptake and sulfide oxidation (Fig. 3C). In previous experiments we were
able to sustain net inorganic carbon acquisition (and presumably net fixation), as well as sulfide uptake in the total absence of nitrate, which indicated that oxygen is a sufficient oxidant for R. pachyptila symbionts (13). These findings do not
support the hypothesis that nitrate plays a role as an important
oxidant for symbiont respiration.
It is possible that the reduction of nitrate may be coupled to
respiration, as a minor oxidant, with concomitant production of ammonia
(referred to as dissimilatory nitrate reduction to ammonia). This
occurs in members of the genera Beggiatoa and
Thioploca, which reduce nitrate during respiration and
produce ammonia as an end product (24, 27). Dissimilatory
nitrate reduction has also been observed in the Lucinoma
aequizonata symbiosis (15). This scenario, although
possible, seems unlikely in R. pachyptila given the evidence
that dissimilatory nitrate reduction does not occur, as mentioned above.
The role of urate (uric acid) in the association described here has not
been definitively resolved. It has been suggested that in R. pachyptila uric acid may play a role in nitrogen storage (7). In our nitrate repletion-depletion studies, the pools of uric acid in both trophosome samples and body wall samples did not
differ significantly when we compared pre- and postnitrate treatments,
suggesting that, unlike the sizes of the nitrate and ammonia pools, the
sizes of the uric acid pools do not vary over several days (Table 2).
In addition, uric acid was never found in the aquarium effluent,
indicating that uric acid is probably not eliminated into the
environment. The stability of the uric acid pools and the presence of
uric acid in the host body wall suggest that uric acid may not be a
product of bacterial metabolism but rather may be a product of host
nitrogen metabolism. In some marine organisms, such as limpets, tissue
uric acid concentrations vary seasonally and as a function of diet
(32); the uric acid in R. pachyptila may be an
intermediate or end product of protein catabolism and may not be
utilized by the symbionts. In other symbiotic associations, such as
Convoluta roscoffensis, the uric acid serves as a store of
nitrogen for the symbionts (8). Experiments to determine the
changes in the uric acid pools over a longer time course, as well as
the utilization of uric acid by isolated symbiont preparations, are
needed to determine the potential for utilization of uric acid by the
bacteria. It is also possible that uric acid may also serve as an
antioxidant and protect oxidant-sensitive pathways from both oxygen and
nitrate (23, 26).
Accordingly, in our model of nitrogen flux for this association,
nitrate is taken up by the worm (via an unknown mode of active transport), transported to the trophosome, and reduced by the symbionts
to nitrite and then ammonia. We posit that ammonia is the end product
of nitrate reduction and that fractions of both the nitrite and the
ammonia produced by the symbionts diffuse from the trophosome into the
vascular blood of the host, which results in the loss of a small amount
of nitrite and ammonia to the environment via passive diffusion. The
diffusion of ammonia into the vascular fluid allows for the possibility
that the host may incorporate ammonia into amino acids via ammonia
assimilatory pathways. This does not preclude the possibility that the
host acquires nitrogen through some other means (e.g., digestion of symbionts). A fraction of the nitrogen incorporated by the host leads
to formation and storage of urate in both the body wall (which is
devoid of symbionts) and the trophosome. We also posit that the
symbionts incorporate the majority of the ammonia into amino acids and
that this incorporation is most responsible for the discrepancy in the
nitrogen flux. At the rates observed under in situ conditions, the
reduction of nitrate is sufficient to meet the biosynthetic demands of
the association but cannot solely support the oxidative demands of the
symbionts. Given the extraordinary biomass of R. pachyptila
at many vents (33) and the rates of nitrate reduction
inferred from our study, the reduction of nitrate and the subsequent
incorporation into the tissues of the worms suggest that R. pachyptila may be the major primary producer (with respect to
nitrogen) in the hydrothermal vent community.
 |
ACKNOWLEDGMENTS |
We thank the captains and crews of the RV New Horizon,
RV Atlantis II and Atlantis, DSRV
Alvin, RV Wecoma, RV Nadir, and DSRV Nautile. We also thank S. Goffredi, S. Powell, J. Freytag,
M. Delacruz, and Kristie Klose for their tireless efforts, as well as
R. Trench and R. Suarez for reviews and revision of the manuscript. Special thanks go to F. Gaill, A. Chave, and D. Manahan, chief scientists of the 1996, 1997, and 1998 expeditions.
Funding for this project was provided by NSF grants OCE-9301374 (to
J.J.C.) and OCE-9632861 (to J.J.C.).
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Marine Science
Institute, University of California at Santa Barbara, Santa Barbara, CA
93106. Phone: (805) 893-3659. Fax: (805) 893-4724. E-mail: girguis{at}lifesci.ucsb.edu.
 |
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