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Applied and Environmental Microbiology, July 2000, p. 2921-2927, Vol. 66, No. 7
Department of Animal Sciences, Ohio
Agricultural Research and Development Center, The Ohio State
University, Wooster, Ohio 44691-4096
Received 28 January 2000/Accepted 26 April 2000
Cellulose digestion, bacterial numbers, and fungal numbers were
monitored over time in vitro by using a purified cellulose medium with
and without antibiotics (penicillin and streptomycin). All
fermentations were inoculated with a 1:10 dilution of whole rumen
contents (WRC). Without antibiotics, cellulose digestion was higher
(P < 0.01) at 24, 30, 48, and 72 h; fungi had
almost disappeared by 24 h, while bacterial concentrations
increased over 100-fold in 24 h and then decreased gradually up to
72 h. In those fermentations with added antibiotics, fungal
concentrations increased 4-fold by 30 h and up to 42-fold at
72 h; bacterial concentrations were markedly reduced by 24 h
and remained low through 72 h. Similar results were obtained with
ground alfalfa as a substrate. In further studies, the in vitro
fermentation of purified cellulose without antibiotics was stopped
after 18 to 20 h, and the microbial population was killed by
autoclaving. Antibiotics were added to half of the tubes, and all tubes
were reinoculated with WRC. After 72 h, extensive cellulose
digestion had occurred in those tubes without antibiotics, as compared
to very low cellulose digestion with added antibiotics. The extent of
this inhibition was found to increase in proportion to the length of
the initial fermentation period, suggesting the production of a
heat-stable inhibitory factor or factors. The inhibitory activity was
present in rumen fluid, could be extracted from lyophilized rumen fluid
(LRF) with water, and was stable in response to proteolytic enzymes. In
addition, the water-extracted residue of LRF was found to contain
growth factor activity for rumen fungi in vitro.
The flagellated microorganisms
observed in rumen contents by Liebetanz in 1910 (36) and
Braune in 1913 (13) were originally believed to be
flagellate protozoa. However, in a series of classic studies, Orpin
(39-45) determined that these organisms were actually flagellated zoospores of anaerobic fungi. Although concentrations of
the fungi are relatively low in comparison to those of the bacteria and
ciliate protozoa, they possess a wide range of enzymes which are
capable of hydrolyzing most of the structural polysaccharides occurring
in plant cell walls (21, 26, 35, 48, 53, 55). The fungi also
appear to be superior to the rumen bacteria in their ability to break
down and degrade the structural barriers in plant material
(2). They are able to weaken and partially or fully degrade
the more recalcitrant plant tissues as well as penetrate the cuticle
barrier (3, 5, 34). When fungi were removed from the rumen,
both feed intake and fiber digestibility were decreased; however, total
viable bacteria, cellulolytic bacteria, or ciliate protozoal
concentrations were not affected (24). Based on in vitro
studies with rumen fluid, using antibiotics and a fungicide to
selectively culture either the bacteria or fungi, Akin and coworkers
(1, 56) concluded that the bacteria were the most active
fiber-digesting organisms, even though fungal numbers were increased in
the antibiotic-treated cultures.
A number of studies have been conducted on the interrelationships
between the fungi and rumen bacteria and protozoa. The fungi form quite
stable cocultures with rumen methanogenic bacteria as a result of their
high production of hydrogen (23, 47). In general, these
cocultures produce an increased amount of fungal biomass (9)
and exhibit an increase in both the rate and extent of cellulose
degradation (7, 10, 33). On the other hand, when combined in
coculture with the cellulolytic ruminococci, their cellulolytic
activity appeared to be inhibited (11, 28, 50). In contrast,
Fibrobacter succinogenes appears to have little if any
effect on the activity of the fungi (11, 50). Coincubations of protozoa with fungi have shown that the protozoa are able to both
ingest and digest fungi (47). Morgavi et al. (37)
found considerable chitinase activity in samples of mixed rumen
protozoa, which would account for their predatory activity on the rumen fungi (30, 54). No effects were noted when a washed
preparation of small protozoa (over 95% Dasytricha
ruminantium) was incubated with the rumen fungus
Neocallimastix frontalis. However, in a similar experiment
using medium-sized protozoa (both holotrichs and entodiniomorphs),
fungal digestion was markedly inhibited (23).
In spite of the unique abilities of the fungi to attack and degrade the
more resistant plant cell walls, their role and importance in the
overall rumen fermentation remain as major questions to be answered.
Their rates of growth and digestion of plant polysaccharides appear to
be somewhat slower than those of the bacteria, perhaps as a result of
their more complex life cycle (45, 47). Some type of
bacterial inhibition might also be postulated, based on the decreased
cellulolytic activity which occurs in coculture with ruminococci
(11, 50; A. J. Richardson, C. S. Stewart, G. P. Campbell, A. B. Wilson, and K. N. Joblin, Proc.
XIV Int. Congr. Microbiol., abstr. PG2-24, p. 233, 1986) and the fact
that fungal colonies are not detected in roll tubes inoculated with rumen contents if antibiotics are not added to the medium
(29). The present study was undertaken to enumerate
bacterial and fungal numbers after the in vitro fermentation of
cellulose by whole rumen contents in the presence and absence of
antibiotics. Both purified cellulose and intact forage were used as substrates.
Media and culture.
Unless noted otherwise, the basal
purified cellulose medium was used in all experiments and contained the
following ingredients per 100 ml: 15 ml each of mineral solutions I and
II of Bryant and Burkey (15), 0.1 ml of a 0.1% resazurin
solution, 0.2 g of Trypticase, 0.05 g of yeast extract, 0.45 ml of the volatile fatty acid mix of Caldwell and Bryant
(16), 33.33 ml of a 6% solution of 24-h ball-milled
cellulose (Sigmacell-20; Sigma, St. Louis, Mo.), 0.1 g of glucose,
20 ml of rumen fluid (RF [the supernatant obtained from centrifugation
at 1,000 × g for 10 min]), 3.33 ml of 12%
Na2CO3, 1.67 ml of 3% cysteine hydrochloride,
and 4.0 ml of distilled water. Thirteen-milliliter aliquots were tubed
under O2-free CO2 into culture tubes (16 by 150 mm), closed with rubber stoppers, and autoclaved in racks at 121°C
for 20 min (18). An additional 1 ml of either sterile
distilled water or antibiotic solution was added at the time of
inoculation, bringing the volume to 14 ml.
0099-2240/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Antibiosis between Ruminal Bacteria and
Ruminal Fungi
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ABSTRACT
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
![]()
INTRODUCTION
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
![]()
MATERIALS AND METHODS
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
Inoculum. Rumen contents were obtained through a permanent fistula from a steer fed a diet of grass hay. The sample was taken just before the morning feeding. Twenty grams of rumen ingesta was diluted 1:10 with the anaerobic dilution solution of Bryant and Burkey (15), and the mixture was agitated for 3 min under a vigorous stream of O2-free CO2. Fermentation tubes were inoculated with 2 ml of the 1:10 dilution.
Bacterial and fungal assays. Total bacterial and fungal concentrations were determined by using most-probable-number (MPN) assays as described by Dehority et al. (20) and Obispo and Dehority (38). For all experiments, the basal medium of Obispo and Dehority (38) was used without any additions to determine bacterial concentrations, with antibiotics to enumerate fungi, or with cycloheximide to determine the possible fungal contribution to total cellulose digestion.
Chemical analyses. Purified cellulose digestion was measured by the procedure previously described by Hiltner and Dehority (27). Essentially this involves centrifugation of the insoluble material, digestion with acid-detergent-fiber solution for 1 h at 100°C, washing with hot water by centrifugation, and weighing the residue. Digestion of cellulose from alfalfa was determined by using the Crampton-Maynard procedure (17). Glucose utilization was determined colorimetrically at 520 mµ with the orcinol reaction (14).
Experimental protocol. The designs of the major experiments (results shown in Tables 1 to 4) are given below.
(i) Bacterial and fungal growth related to purified cellulose digestion (Table 1). Using the purified cellulose broth medium, duplicate tubes, with and without antibiotics, were inoculated with rumen contents and allowed to ferment for 0, 24, 30, 48, and 72 h. The tubes were then analyzed for cellulose digestion, bacterial concentrations, and fungal concentrations. Each time period was replicated twice, so there are 8 values behind the 0-h data and four values behind each of the other time periods.
(ii) Bacterial and fungal growth related to digestion of cellulose from ground alfalfa (Table 2). The same format was used as in the first experiment, except ground alfalfa was used as the substrate and samples were taken after fermentation for 0, 30, and 72 h. Three replicates were conducted, with duplicate tubes at each time period.
(iii) Cellulose digestion in sterilized medium after an initial 18-h fermentation (Table 3). Tubes containing purified cellulose medium were inoculated and incubated for 0 h (4 tubes) or 18 h (8 tubes). At the end of their respective fermentations, all tubes were autoclaved for 20 min at 121°C. Using duplicate tubes, additions were then made as follows: 0-h tubes, none or antibiotics; 18-h fermentation tubes, none, antibiotics, cycloheximide, or antibiotics plus cycloheximide. All tubes were then inoculated again, allowed to ferment for 72 h, and analyzed for residual cellulose.
(iv) Effect of initial fermentation time on inhibitor production (Table 4). Sixteen tubes of purified cellulose medium were inoculated and allowed to ferment, with four tubes being removed and autoclaved (20 min at 121°C) at 0, 5, 10, and 20 h. For each set of four tubes, no additions were made to two tubes and antibiotics were added to the other two. All tubes were inoculated, allowed to ferment for an additional 72 h, and analyzed for residual cellulose.
Effect of proteolytic enzymes. The water extract of LRF was incubated for 1 h at 38°C with an equal volume of 0.01 M phosphate buffer containing 1 mg (per ml) of either a nonspecific protease from Streptomyces griseus or trypsin (Sigma). At the same time, solutions of casein and bovine albumin (1 mg/ml) were also treated with the enzyme solutions (control and boiled), and the activity of the enzymes was determined by estimating hydrolysis of the proteins based on the presence of a precipitate following the addition of trichloroacetic acid.
Statistical analysis. Data were analyzed with the t test and paired t test (49).
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RESULTS |
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Bacterial and fungal growth related to purified cellulose
digestion.
This experiment was specifically designed to monitor
bacterial and fungal concentrations over time and attempt to relate
them to cellulose digestion. Table 1
shows that 37.5% cellulose digestion occurred in the control
fermentation tubes at 24 h, with values increasing to 51, 57, and
70% at 30, 48, and 72 h, respectively. In contrast, cellulose
digestion in those tubes with the added antibiotics was 1, 3, 17, and
47% at the same time periods. Bacterial concentrations in the control
fermentation tubes increased markedly in the first 24 h and then
gradually declined up to 72 h, almost decreasing back to their
starting level. Although the bacteria were not completely eliminated
when antibiotics were added, concentrations fell to barely detectable
levels by 24 h and remained there throughout the 72-h
fermentation. Fungal concentrations in the control tubes essentially
decreased to zero within the first 24 h. However, with added
antibiotics, fungal concentrations remained at or slightly above their
starting value at 24 h, increased about fivefold by 30 h, and
continued to increase at both 48 and 72 h.
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Bacterial and fungal growth related to digestion of cellulose from
ground alfalfa.
A similar set of fermentations and analyses were
conducted with immature alfalfa as a substrate (Table
2); however, fermentations were carried
out only for 30 and 72 h. Marked cellulose digestion occurred by
30 h in the control tubes without antibiotics as compared to
minimal cellulose digestion in the antibiotic tubes. However, considerable cellulose digestion took place in the
antibiotic-containing tubes between 30 and 72 h. Without
antibiotics, bacterial concentrations increased nearly 100-fold in
30 h and then fell back almost to their initial starting level by
72 h. With antibiotics, bacterial concentrations steadily
decreased from 0 to 72 h. Fungal concentrations in the controls
decreased from approximately 1,400 per ml at the start to 800 and 0.7 per ml at 30 and 72 h, respectively. With antibiotics, fungal
concentrations increased at 30 h, but fell back to initial levels
by 72 h. This decrease in fungal concentrations between 30 and
72 h, when most of the cellulose digestion took place, was
somewhat unexpected, but fairly consistent across all three replicates.
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Possible production of a fungal inhibitor(s) by the rumen bacteria. The two previous sets of experiments clearly demonstrate the rapid growth of bacteria compared to that of the fungi and further suggest that the bacteria somehow inhibit growth of the fungi. In order to study this apparent inhibition further, six control fermentation tubes were incubated for 20 h. Two tubes were removed, and pH measurements of the medium were taken, followed by analysis for residual cellulose. In two of the remaining four tubes, enough sterile Na2CO3 was added to raise the pH from approximately 6.1 to 6.6, and antibiotics were added to all tubes. The tubes were then incubated for an additional 72 h. In two experiments, cellulose digestion averaged 38.6% ± 2.5% in the first 20 h. Total digestion after the additional 72-h fermentation was 50.2% ± 6.2% in the pH-adjusted tubes and 63.2% ± 1.2% in the nonadjusted tubes. However, no fungi were detected in any of the tubes, suggesting that the second fermentation was probably bacterial and not fungal. Apparently bacterial numbers had increased enough in 20 h (Table 1) that the level of antibiotics was not adequate to totally inhibit bacterial growth. However, when antibiotic levels were increased in separate experiments, fungal growth was also inhibited. Thus, the only procedure available to study the negative effect of bacterial fermentation on fungal growth appeared to be sterilization of the control culture after the initial fermentation period. Antibiotics could then be added, and the tube could be reinoculated with rumen contents.
Attempts to sterilize the fermentation tubes by oxidation, using the procedure described by Fondevila and Dehority (22), were unsuccessful, even though pure oxygen was used in place of air. Essentially the tubes seemed to rapidly reduce again after they had been gassed with oxygen, after the stopper had been replaced with a cotton plug, and after they had been placed back into the incubator. In addition, the normal color change for resazurin was affected (i.e., instead of changing from colorless to pink in the oxidized state, the medium turned a darkish brown). Thus, we used heat to sterilize the tubes after the initial fermentation (autoclaving at 121°C for 20 min).Cellulose digestion in sterilized medium after an initial 18-h
fermentation.
In addition to looking for the production of an
inhibitor by the bacteria, a primary concern in this experiment was the
possibility that heat might destroy any inhibitory factor(s) that was
produced. The results of these fermentations are shown in Table
3. After the initial 20-h fermentation,
39.1 mg (20%) of the cellulose had been digested, and the medium pH
was about 6.5 (no pH adjustments were made). All tubes were autoclaved,
inoculated, and incubated for an additional 72 h. In the control
and antibiotic tubes without an initial fermentation (0 h), 112.6 mg
(59.1%) and 95.4 mg (50.7%) of the cellulose were digested,
respectively. In those tubes which had an 18-h initial fermentation,
73.8 mg of cellulose was digested in the second fermentation without
any additions (control), which when added to the 39.1 mg which had
already been digested, gave a total of 112.9 mg (59.2%) of cellulose
digested. This indicates that autoclaving and reinoculation had no
apparent negative effects on bacterial digestion of cellulose. However,
only 21.4 mg of cellulose was digested in the tubes with antibiotics
(fungal digestion), giving an overall total of only 31.4% cellulose
digested. With added cycloheximide (bacterial digestion), 68.8 mg of
cellulose was digested (56.6% of total cellulose). As expected, no
additional digestion of cellulose occurred when both antibiotics and
cycloheximide were added before the second fermentation. For the tubes
preincubated for 18 h, the amounts of cellulose digested in the
control and cycloheximide tubes (bacterial digestion) were not
different (P > 0.72); however, both were greater
(P < 0.01) than those in the antibiotic tubes (fungal
digestion).
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Effect of initial fermentation time on inhibitor production.
The above experiments suggest that the inhibition of fungal growth is
caused by bacterial production of one or more inhibitory compounds. If
true, then the extent of inhibition should be related to the length of
the initial fermentation. This was investigated, and the results are
shown in Table 4. As expected, cellulose digestion increased with time of the initial fermentation, increasing from 6.1 mg in 5 h to 63.4 mg by 20 h. During the second
fermentation, the amounts of cellulose digested in the control tubes
(bacterial digestion) were not different between the 0- and 5-h initial
fermentations (P > 0.72), decreased slightly between 5 and 10 h (P < 0.06), and fell markedly between 10 and 20 h (P < 0.01). In the antibiotic tubes
(fungal digestion), the amount of cellulose digested decreased from 53 mg at 0 h to 37.6 mg (P < 0.21) after the initial
5-h fermentation. Between the 5- and 10-h initial fermentations, the amount of cellulose digested decreased markedly, i.e., falling from
37.6 mg to 6.0 mg (P < 0.01). A further decrease was
observed after 20 h, from 6.0 mg down to 0.1 mg (P < 0.14). Differences between the control and antibiotic tubes were
significant at 5 and 10 h (P < 0.01) and 20 h (P < 0.02). When the total percent cellulose
digested in both fermentations was calculated, there were no
differences with time in the control fermentations (P > 0.34). However, the total percent cellulose digestion in the antibiotic tubes after the 10-h initial fermentation was lower than
those of both the 5-h (P < 0.15) and 20-h
(P < 0.01) fermentations.
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Inhibition of fungal growth by RF.
If a mixed culture of rumen
bacteria growing in vitro on purified cellulose or alfalfa produces a
factor or factors which are inhibitory to rumen fungi, this factor
should be present in RF. Thus, several levels of RF were incorporated
into the basal in vitro medium, and cellulose digestion by rumen
contents was determined with and without antibiotics. The inclusion of
30 or 60% RF in the medium had no effect on bacterial cellulose
digestion in the control tubes (top portion of Table
5). In contrast, addition of RF
drastically reduced cellulose digestion (P < 0.01) in
those tubes containing antibiotics (fungal digestion). There were no differences in the extent of inhibition between the 30 and 60% levels
of added RF. When RF was centrifuged at 17,500 × g for 20 min, addition of the supernatant equivalent to 70% RF in the medium
decreased cellulose digestion compared to that in the zero RF control
(P < 0.05). The precipitate was not different from the
control (P > 0.30).
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DISCUSSION |
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The present results clearly demonstrate that growth of the rumen fungi is markedly inhibited in cocultures with rumen bacteria (Tables 1 and 2). However, if antibiotics are added to the fermentation to inhibit bacterial growth, the fungi will proliferate and digest purified cellulose as well as the cellulose from ground alfalfa. Both the rate of growth and rate and extent of cellulose digestion are lower for the fungi. Babel (6) suggested the term antibiosis for this type of relationship, which he described as "an antagonistic association between two microorganisms to the detriment of one of them." This would appear to correctly describe the relationship observed between the bacteria and fungi in this study.
Possible factors which might contribute to this antibiosis are that rapid bacterial growth decreases pH, which in turn inhibits flagellate growth and germination (25, 42, 46); there is not enough soluble energy in the medium for encystment and germination of the zoospores (46); or the bacteria produce an inhibitory factor or factors. The results of this study appear to eliminate low pH and lack of soluble substrates as potential causes of the inhibition observed between rumen bacteria and fungi and support the explanation of inhibitor production. In addition to some preliminary studies by Akin and Windham (4), which suggested that rumen bacteria could inhibit fungal growth and activity, investigators have noted that some species of fibrolytic rumen bacteria can strongly inhibit the fungi (47). Most, but not all, strains of Ruminococcus albus, Ruminococcus flavefaciens, and Butyrivibrio fibrisolvens will inhibit the fungi in coculture; however, this was also found to vary between species of fungi (8, 11, 28, 32, 47, 50). In contrast, the strongly cellulolytic species F. succinogenes has little if any effect on the fungi (8, 11, 28, 50). This difference between species and strains appears to rule out fermentation products as the source of the inhibition. Joblin and Naylor (31) tested the effects of bacterial fermentation products on cellulose digestion by N. frontalis and concluded that it was unlikely that they would cause the extensive inhibition occurring in the bacterial and fungal cocultures. The data shown in Table 4 also support this conclusion, since marked inhibition of cellulose digestion occurred in the tubes containing antibiotics, despite a very limited digestion in the 5- and 10-h initial fermentations.
Stewart et al. (52) observed an inhibition in cellulose digestion by N. frontalis RE1 when cell culture supernatants from R. albus or R. flavefaciens fermentations were added; however, growth of the fungus on glucose was not inhibited by addition of the supernatant. The inhibitory activity was destroyed by autoclaving at 121°C for 15 min, and based on gel permeation and anion-exchange chromatography, appeared to consist of several polypeptides. The authors postulated that the inhibitory factor(s) interfered with attachment of the fungi to the substrate. In a later study, Stewart (51) reported that the inhibitor was resistant to protease enzymes, but sensitive to periodate. Since periodate is known to split the bond between two hydroxylated carbon atoms, the author speculated that it may be affecting a lipoteichoic acid associated with the proteins.
Bernalier et al. (12) also detected an extracellular factor(s) in R. flavefaciens culture supernatants which inhibited the cellulolytic activity of N. frontalis. The factor(s) was destroyed at temperatures above 60°C and could be precipitated with ammonium sulfate at 40% saturation. Using anion-exchange chromatography, sequential precipitation, dialysis, and sodium dodecyl sulfate-polyacrylamide gel electrophoresis, two proteins were identified as being responsible for the inhibition. The inhibitory factor(s) did not appear to affect fungal growth, but instead affected the activity of the fungal cellulases.
In summary, antibiosis between rumen bacteria and fungi appears to be caused by a water-soluble, protease-resistant, heat-stable factor(s) produced by the bacteria in vitro or normally occurring in RF. The present results differ somewhat from those of several previous reports on the inhibitory activity produced by cultures of R. flavefaciens, which was destroyed by heat and appeared to be protein in nature (12, 51). However, in a later study, the inhibitory activity described by Stewart et al. (52) was shown to be resistant to protease treatment. It is of interest that in our study as well as those with the pure cultures, the inhibition does not seem to affect fungal growth, but rather digestion of the insoluble cellulose substrate. Interference with either the encystment of zoospores or initial thallus development and inhibition of fungal cellulases are all possible modes of action. The present results do pose a very puzzling question: if RF contains an inhibitory factor for the fungi, why are they always present in vivo? Their numbers may vary, but they occur in almost all animals and across all types of diets. Are they maintained by growth on soluble carbohydrates and contribute very little to cellulose digestion in the rumen? It is also of interest that RF appears to contain a factor which increases fungal cellulose digestion in vitro when antibiotics are included in the medium. Although further studies are obviously needed, the present information might suggest that in vivo, dilution, fluid turnover rate, or absorption decreases the concentration of the inhibitor(s), allowing limited growth of the fungi.
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ACKNOWLEDGMENTS |
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Salaries and research support were provided by state and federal funds appropriated to the Ohio Agricultural Research and Development Center, The Ohio State University.
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FOOTNOTES |
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* Corresponding author. Mailing address: Department of Animal Sciences, Ohio Agricultural Research and Development Center, 1680 Madison Ave., Wooster, OH 44691-4096. Phone: (330) 263-3909. Fax: (330) 263-3949. E-mail: dehority.1{at}osu.edu.
Manuscript no. 4-00AS of the Ohio Agricultural Research and
Development Center.
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