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Applied and Environmental Microbiology, August 2000, p. 3399-3407, Vol. 66, No. 8
Department of Microbiology and
Immunology1 and Department of Soil,
Water, and Environmental Science,2
University of Arizona, Tucson, Arizona 85721
Received 20 March 2000/Accepted 31 May 2000
A pilot field study was conducted to assess the impact of
bioaugmentation with two plasmid pJP4-bearing microorganisms: the natural host, Ralstonia eutropha JMP134, and a
laboratory-generated strain amenable to donor counterselection,
Escherichia coli D11. The R. eutropha strain
contained chromosomal genes necessary for mineralization of
2,4-dichlorophenoxyacetic acid (2,4-D), while the E. coli
strain did not. The soil system was contaminated with 2,4-D alone or
was cocontaminated with 2,4-D and Cd. Plasmid transfer to indigenous
populations, plasmid persistence in soil, and degradation of 2,4-D were
monitored over a 63-day period in the bioreactors. To assess the impact
of contaminant reexposure, aliquots of bioreactor soil were reamended
with additional 2,4-D. Both introduced donors remained culturable and
transferred plasmid pJP4 to indigenous recipients, although to
different extents. Isolated transconjugants were members of the
Burkholderia and Ralstonia genera, suggesting multiple, if not successive, plasmid transfers. Upon a second exposure
to 2,4-D, enhanced degradation was observed for all treatments, suggesting microbial adaptation to 2,4-D. Upon reexposure, degradation was most rapid for the E. coli D11-inoculated treatments.
Cd did not significantly impact 2,4-D degradation or transconjugant
formation. This study demonstrated that the choice of donor
microorganism might be a key factor to consider for bioaugmentation
efforts. In addition, the establishment of an array of stable
indigenous plasmid hosts at sites with potential for reexposure or
long-term contamination may be particularly useful.
Increased public awareness of
environmental pollution has brought to the forefront the need for new
technologies to help mitigate deterioration of environmental quality.
Contaminated sites are often bioaugmented with bacteria with specific
properties or capabilities, such as metal resistance or contaminant
degradation. However, in many instances, introduced microorganisms do
not survive well due to stresses inherent in the soil environment,
including competition from indigenous microorganisms. Another approach
to bioaugmentation is to inoculate the contaminated site with
microorganisms carrying self-transmissible plasmids containing genes
involved in resistance and/or degradation. These plasmids may be
transferred to indigenous microorganisms that possess the
characteristics necessary for growth and survival in the soil
environment and, thus, establish a stable array of hosts for the plasmids.
Transfer of large catabolic plasmids from an introduced donor to
indigenous microbial recipients has been evaluated previously (3-5, 7, 12, 19). Furthermore, enhanced remediation has been attributed to such transfers (4, 5, 12, 19). Use of
this bioremediation approach for sites that contain both organic and
metal contaminants may be of particular interest, since the presence of
metals has been shown to significantly reduce, if not inhibit, organic
degradation (15, 17, 20).
In the United States alone, approximately 37% of sites contaminated
with an organic substance also contain inorganic contaminants such as
heavy metals (W. Kovalich, Abstr. 4th World Congr. Chem. Eng., p.
281-295, 1991). Bioaugmentation studies of cocontaminated sites have
focused on the introduction of a microorganism that is both metal
resistant and capable of organic degradation. Strains constructed via
plate matings have been shown to be capable of degrading
2,4-dichlorophenoxyacetic acid (2,4-D) in the presence of nickel and
zinc (17). Although this study was conducted in broth, it
demonstrated that it is possible for organic biodegradation to occur in
the presence of metal stress. Several studies have also shown that it
is possible to isolate metal-resistant microbial populations from
metal-contaminated soils as well as from soil with no metal
contamination. It stands to reason that transfer of a catabolic plasmid
to metal-resistant indigenous recipient populations may be another
approach to facilitate remediation of cocontaminated sites.
Studies of gene transfer in soil have typically been conducted in
microcosms or columns containing between 100 grams and a few kilograms
of soil. Although these studies are useful in assessing the potential
for gene transfer, their relatively small scale may not produce results
representative of soil in the field. In addition, the controlled
laboratory conditions do not realistically reflect environmental
conditions. Thus, the scale of this study was increased to the
intermediate field scale and involved incubations within greenhouses.
Plasmid pJP4 was used in this model system to assess catabolic-plasmid
dissemination in contaminated soil. Two pJP4 hosts were used as inocula
for field soil bioreactors: the natural host, Ralstonia
eutropha JMP134, and a laboratory-generated strain amenable to
donor counterselection, Escherichia coli D11. Plasmid pJP4 is 80 kb in size and contains genes whose products degrade 2,4-D to
2-chloromaleylacetic acid. Further degradation from 2-chloromaleylactic acid to succinic acid is achieved by chromosomally encoded proteins (13, 16, 18). Genes whose products result in resistance to
mercuric ions and phenyl mercury acetate are also found within this
plasmid (6). The R. eutropha host degraded 2,4-D,
while the E. coli host lacked chromosomal genes necessary
for complete mineralization. Furthermore, it is not known whether the
genes involved in the conversion of 2,4-D to 2-chloromalelyacetic acid are expressed in the E. coli host. Both donors have been
shown to be able to transfer plasmid pJP4 to indigenous soil
populations. Inoculation with R. eutropha was considered to
be both cell bioaugmentation and gene augmentation since this organism
can both utilize the degradative genes on the plasmid and transfer the
plasmid. In contrast, inoculation with E. coli D11 was
considered to be only gene augmentation since the host itself could not
degrade 2,4-D but could transfer the plasmid. Numerous laboratory
microcosm studies have been conducted with these donors (3, 5,
11, 12; D. T. Newby and I. L. Pepper, unpublished
data). The foci of these studies included plasmid transfer to
indigenous populations, plasmid and donor transport, and 2,4-D degradation.
There were two main objectives for this bioaugmentation study. The
first objective was to evaluate plasmid pJP4 transfer from two
introduced pJP4 donors to indigenous microbes in soil contaminated with
2,4-D alone and in soils cocontaminated with 2,4-D and Cd. Associated
subobjectives included comparisons of transconjugant generation and
identity and of plasmid persistence occurring with the different soil
treatments. A key difference between these pJP4 donors was their
ability (R. eutropha) or inability (E. coli) to
mineralize 2,4-D. Thus, the second main objective was to assess the
effects of cell bioaugmentation in conjunction with gene augmentation (R. eutropha donor) or of gene augmentation alone (E. coli donor) of the soil microbial gene pool on degradation of
2,4-D.
Soil.
A surface soil not previously exposed to 2,4-D and
characterized as a sandy loam with a pH of 6.5 was collected from
Madera Canyon Recreational Area of the Coronado National Forest near Tucson, Ariz. Soil was sieved (5-mm pore size) and stored at the field
site for 6 days prior to contamination and inoculation of individual
bioreactors. The moisture content during the storage period was the
same as that at the time of collection, 3% gravimetric (8%
water-holding capacity).
Field bioreactors.
Each 20-liter polypropylene bioreactor
(46 cm by 76 cm) contained 12.5 kg (dry weight) of Madera Canyon soil.
A description of bioreactor treatments, all conducted in triplicate, is
shown in Table 1. Inoculants and
amendments were applied to soil aliquots while soil was being mixed in
a cement mixer. To avoid cross-contamination, treatments were done
according to the following protocol: treatment 1, treatment 4, mixer
rinsed with tap water, treatment 2, treatment 5, mixer rinsed with 10%
bleach and rinsed with tap water; treatment 3, and treatment 6. Appropriate volumes of 1% stock solutions of CdCl2 and/or
2,4-D were added to bioreactors to achieve the appropriate contaminant
level(s) for each treatment. The 2,4-D stock solution was prepared as
detailed by Di Giovanni et al. (5). Donor microorganisms
were grown to late exponential phase in peptone-yeast-mercury (PH)
broth (5.0 g of peptone, 3.0 g of yeast extract, 1.1 g of
CaCl2, and 5 mg of Hg [added as HgCl2] liter
of distilled water
0099-2240/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Comparison of 2,4-Dichlorophenoxyacetic Acid Degradation and
Plasmid Transfer in Soil Resulting from Bioaugmentation with Two
Different pJP4 Donors
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ABSTRACT
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
![]()
INTRODUCTION
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
![]()
MATERIALS AND METHODS
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
1), diluted 10-fold with sterile
saline, and added to soil aliquots to give an approximate inoculum of
106 CFU g of dry soil
1. A 1/10-strength PH
broth solution was added to controls to compensate for nutrient and Hg
supplements added with the inoculum to soil aliquots. Tap water was
used to achieve comparable initial moisture contents among all
treatment groups and to maintain the moisture level at approximately
25% gravimetric moisture content (64% water-holding capacity)
throughout the course of the study.
TABLE 1.
Description of field bioreactor treatments
Microcosms.
On day 49, moist soil (100 g dry weight) from
each bioreactor was placed in a sterile 0.5-liter polypropylene
wide-mouth screw-cap jar. Two days later (day 51), this soil was
respiked with 500 µg of 2,4-D g of dry soil
1.
Microcosms were sampled on the day they were spiked and at 3, 7, and 14 days after reamendment with 2,4-D. Donor and transconjugant numbers and
2,4-D levels were assessed for samples taken on each of these days,
using the same protocols employed for the bioreactor analyses.
Microcosms were incubated in the same greenhouses as the bioreactors.
Isolation and characterization of presumptive transconjugants and donors. Bacterial populations extracted from the soil were plated on Endo agar (Difco Laboratories, Detroit, Mich.) medium amended with 25 ppm of Hg (added as HgCl2) and on 2,4-D indicator plates, allowing for the selection of E. coli D11 and transconjugant isolates, respectively. The 2,4-D indicator plates contained 112 mg of MgSO4 · 7H2O, 5 mg of ZnSO4 · 7H2O, 2.5 mg of Na2MoO4 · 2H2O, 218 mg of K2HPO4, 14 mg of CaCl2 · 2H2O, 0.22 mg of FeCl3 · 6H2O, 500 mg of NH4Cl, 500 mg of 2,4-D, 80 mg of eosin B, 13 mg of methylene blue, and 20 g of purified agar per liter of distilled water. Cells that mineralized the 2,4-D in this medium formed dark purple colonies on these plates due to the concomitant pH change. E. coli D11 formed dark-purple colonies with a metallic green sheen on the Endo-Hg agar.
Isolates capable of 2,4-D degradation (R. eutropha donor and presumptive transconjugants) were selected from the 2,4-D indicator plates with the highest soil dilution, streaked for isolation on PH plates (5.0 g of peptone, 3.0 g of yeast extract, 1.1 g of CaCl2, 25 mg of Hg [added as HgCl2], and 15 g of agar liter of distilled water
1), and then
used as an inoculum for PH broth (same composition as PH agar, except
without agar and with only 5 mg of Hg, added as HgCl2). The
presence of plasmid pJP4 within these isolates was demonstrated by
their growth in the presence of mercury. Overnight PH broth cultures of
each isolate were centrifuged at 5,220 × g for 5 min,
and the pellets were resuspended in saline. Aliquots (500 µl) of each
suspension were added to 3-ml volumes of 2,4-D indicator broth. This
broth contained (per liter of distilled water) 112 mg of
MgSO4 · 7H2O, 5 mg of
ZnSO4 · 7H2O, 2.5 mg of Na2MoO4 · 2H2O, 340 mg of
KH2PO4, 305 mg of
Na2HPO4, 14 mg of CaCl2 · 2H2O, 22 mg of FeCl3 · 6H2O,
500 mg of NH4Cl, 500 mg of 2,4-D, and 0.004% bromthymol
blue, at pH 7.0. In addition, 100 µl of each cell suspension was
lysed via boiling at 98°C for 10 min prior to use as a template for
two PCR-based analyses. Another 500-µl portion was stored at 4°C
for plasmid analysis. Enterobacterial repetitive intergenic consensus
(ERIC) PCR was performed on each sample as described by Versalovic et
al. (21) to generate a molecular fingerprint of each
isolate. Primers ERICIR and ERIC2 were used. The presence of the pJP4
plasmid-borne tfdB gene was confirmed in isolates with
unique ERIC fingerprints by PCR amplification of a 205-bp portion of
this gene (11). A modified miniscreen for large plasmids was
used to assess the presence of an 80-kb plasmid within these isolates
(14). Transconjugants were identified via amplification of
the 16S rRNA gene (rDNA) within each isolate (J. McQuaid, personal
communication) followed by DNA sequencing of the resulting
amplification products. PCR products were first purified by using a
QIAquick PCR purification kit (Qiagen). The forward primer was
subsequently used for dye termination PCR sequencing, which was
performed at the University of Arizona's Laboratory of Molecular
Systematics and Evolution sequencing facility. Sequence analysis was
performed with advanced BLAST 2.0 program (1) found on the
National Center for Biotechnology Information's World Wide Web site
(http://www.ncbi.nlm.nih.gov). Product and plasmid DNA was visualized
by using an AlphaImager 2000 gel imager (Alpha Innotech Corp., San
Leandro, Calif.) following gel electrophoresis and ethidium bromide staining.
Heterotrophic plate counts. R2A (Difco, Detroit, Mich.) plates were used for the enumeration of heterotrophic microorganisms extracted from soil as described above. Heterotrophic populations within bioreactors were monitored on days 0, 21, 42, and 63, and those within microcosms were monitored on day 14 (day 68 overall). Plates were incubated at 28°C for 6 days.
Quantitation of 2,4-D biodegradation.
The concentration of
2,4-D was monitored through the use of a Waters Associates LC Module 1 high-performance liquid chromatography (HPLC) system, with the
wavelength set at 235 nm, and a Waters C18 column (3.9 mm
by 150 mm). Elution was isocratic, and the mobile phase was
acetonitrile-acidified water (50:50, vol/vol) with a flow rate of 1 ml
min
1. Waters Millennium32 (version 3.05)
software was utilized for peak integrations. Phosphoric acid was used
to acidify the water to pH 2.6. For analysis of 2,4-D within soil, a
1.0-ml aliquot of the vortexed soil-extraction solution was placed in a
1.2-ml microcentrifuge tube and centrifuged at 16,000 × g for 10 min. Any necessary dilutions were made with extracting
solution. All samples were filtered through 0.45-µm-pore-size polypropylene filters prior to HPLC analysis. Several Madera Canyon soil samples that were uninoculated and unamended with Cd and/or 2,4-D
(blanks) were analyzed to evaluate natural soil components that
absorbed at this wavelength.
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RESULTS |
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Bacterial isolation and differentiation.
E. coli D11
donor cells formed dark-purple colonies with a metallic green sheen
within 2 days on Endo medium amended with 25 ppm of Hg. ERIC PCR and
tfdB PCR confirmed that isolates were indeed E. coli D11 cells. Presumptive transconjugants capable of
mineralizing 2,4-D formed dark-purple colonies, often with a metallic
sheen, within 5 days of incubation on 2,4-D indicator plates. The
R. eutropha JMP134 donor formed dark-purple colonies (no
sheen) on this medium, and they were morphologically distinct from
presumptive transconjugants. E. coli D11 cells did not grow on the 2,4-D indicator plates. Presumptive transconjugants were randomly selected from the highest-dilution 2,4-D indicator plates for
confirmation of plasmid presence and isolate identification. The use of
the highest-dilution plates ensured that dominant transconjugant populations were selected and reduced the likelihood of plate matings.
All 2,4-D-degrading isolates that produced unique ERIC fingerprints,
contained a plasmid similar in size to pJP4, had the tfdB
gene, and demonstrated Hg resistance were considered confirmed
transconjugants. A population of indigenous 2,4-D degraders was present
in the Madera Canyon soil, as evidenced by growth of light-purple
pinpoint colonies (104 to 105 CFU g of dry
soil
1) from both inoculated and control soil extracts
following incubation for a week. Most of these isolates resisted
subculturing. Of the indigenous isolates that could be subcultured,
none were Hg resistant or contained an 80-kb plasmid. These
light-purple pinpoint colonies were not included in 2,4-D degrader or
presumptive transconjugant plate counts.
Treatment analysis.
Numbers of 2,4-D degraders, E. coli D11, and heterotrophic cells within bioreactors and within
microcosms are presented in Fig. 1 and
2, respectively. Heterotrophic plate
counts increased from an average for all treatments of 8 × 106 CFU g of dry soil
1 on day 0 to an average
of 7 × 107 CFU g of dry soil
1 by day
21. Heterotrophic plate counts remained fairly constant, at this
elevated level, for the remainder of the study for all bioreactor and
microcosm treatments. No significant differences in microbial numbers
were observed in the presence and in the absence of Cd.
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(i) Controls. No presumptive transconjugant or pJP4 donor cells were detected for any control treatments. Complete biodegradation of 2,4-D within control bioreactors occurred within 49 days when the treatment lacked Cd and within 63 days for soil also containing Cd. In microcosms, degradation was complete within 14 days for all treatment groups.
(ii) E. coli D11-inoculated treatment groups (pJP4 gene
augmentation).
Plasmid pJP4 donor cells and presumptive
transconjugants were culturable throughout the entire study from
bioreactor soil inoculated with E. coli D11, both in the
absence and in the presence of Cd (Fig. 1B and E, respectively). With
both treatments, the number of E. coli D11 donor cells
decreased gradually from the initial inoculum, 106 CFU g of
dry soil
1, by approximately 2 orders of magnitude during
the course of the study. Presumptive transconjugant colonies isolated
on the 2,4-D indicator plates were morphologically diverse. These
colonies were all considered presumptive transconjugants since the
E. coli donor was unable to grow on that medium. Presumptive
transconjugant populations initially consisted of 103 CFU g
of dry soil
1 and increased in number by approximately 1 order of magnitude over the next 2 weeks. By day 21, approximately
7 × 106 CFU of presumptive transconjugants g of dry
soil
1 were observed. Only a slight decrease in this
number was observed over the next 6 weeks. Degradation of 2,4-D within
bioreactors inoculated with E. coli D11 occurred at rates
similar to that of controls. Degradation of 2,4-D was complete 49 (no
Cd) to 56 (Cd) days after inoculation.
1
impacted microbial populations as shown in Fig. 2B and E. Within
microcosms, the number of E. coli D11 cells decreased to
only 103 CFU g of dry soil
1 2 weeks after
soil was spiked with 2,4-D. In contrast, presumptive transconjugant
populations increased in number, reaching a maximum observed level of
4 × 107 CFU g of dry soil
1 3 days after
the 2,4-D spike. The morphological diversity of presumptive
transconjugant colonies remained high. In the microcosms, E. coli D11-inoculated soil demonstrated the highest rate of 2,4-D degradation of all the treatment groups, with approximately 90% of the
2,4-D degraded within 3 days and complete degradation achieved within 7 days (Fig. 3).
(iii) Ralstonia-inoculated treatment groups (pJP4 cell
bioaugmentation and gene augmentation).
The R. eutropha
JMP134 inoculum was added to soil at approximately 5 × 105 CFU g of dry soil
1. Fig. 1C and F show
that the number of 2,4-D degraders increased from this value to
107 CFU g of dry soil
1. The 2,4-D-degrading
populations remained at this level throughout the remainder of the
study. Nearly all colonies isolated on the 2,4-D indicator plates had
the same morphology as the R. eutropha pJP4 donor. No
E. coli D11 donor cells were detected in soil subjected to
these treatments. Cell bioaugmentation with R. eutropha
JMP134 (Fig. 1C and F) resulted in significantly increased rates of
2,4-D degradation compared to those in the corresponding control and E. coli D11-augmented bioreactors (Fig. 3). Approximately
98% of the 2,4-D was degraded within 21 days, with no 2,4-D detected by day 28.
1 (Fig. 2C and F). However, 1 week after the spike,
2,4-D-degrading populations on the 2,4-D indicator plates were
morphologically diverse. This suggested the presence of presumptive
transconjugants. Degradation of 2,4-D was rapid within these
microcosms. Approximately 50% of the added 2,4-D was degraded within 3 days, and it was completely degraded within 7 days (Fig. 3).
Characterization of 2,4-D-degrading populations.
Approximately
14 colonies selected randomly from 2,4-D indicator plates for each
treatment group and from each sampling time were further characterized.
Growth of these isolates on PH plates confirmed their Hg resistance.
Molecular fingerprints of each isolate were generated via ERIC PCR.
Fingerprint analysis of these isolates confirmed that none was E. coli D11. The distribution of ERIC fingerprints over time was used
to semiquantitatively assess transconjugant diversity within
bioreactors (Fig. 4) and within
microcosms (Fig. 5).
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DISCUSSION |
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This study was conducted at the intermediate field scale level in order to approximate field conditions more closely than is possible in smaller-scale laboratory experiments. The extreme fluctuation of the greenhouse temperature resulted from large diurnal temperature changes, with high temperatures being amplified by the greenhouse enclosure. Although observed fluctuations in temperature were extreme, they were more representative of field conditions than incubation at a constant temperature as is the common practice for laboratory experiments.
Assessment of the microbial populations over time (Fig. 1) provided insight into treatment-induced shifts in soil microbial ecology. The increase in the heterotrophic populations in all bioreactors on days subsequent to day 0 can be attributed to an increase in moisture, from 8 to 64% water-holding capacity, and the addition of a carbon source, 2,4-D. E. coli D11 donor cells declined in number in soil inoculated with this organism. In contrast, the R. eutropha JMP134 inoculum increased by 1 order of magnitude and remained at the elevated level throughout the study. There exist several plausible explanations for the observed difference in donor survival. First, E. coli D11 is not a naturally soilborne microorganism and thus may be more susceptible to environmental stresses, such as the extreme temperature fluctuations observed in the greenhouses and competition from indigenous populations. Second, it is likely that the difference in survival is due in part to the ability of the R. eutropha donor to degrade 2,4-D and thus compete more effectively than E. coli D11 with the indigenous populations to establish a niche for itself. Finally, only pJP4-harboring E. coli was enumerated on the Endo medium amended with HgCl2. Thus, it is possible that some of the decline in E. coli numbers was due to curing of pJP4 from E. coli D11. The survival of both donor organisms was significant since it demonstrated that even in the absence of gene transfer, plasmid pJP4 persisted within both donor microorganisms for extended periods of time in the soil.
This study revealed that plasmid transfer occurred from both of the
introduced donors to indigenous recipients (Fig. 4 and 5). However, the
level of transconjugants present at specific times differed
significantly depending on the pJP4 donor. Donor counterselection
facilitated the detection of plasmid transfer from E. coli
D11 even at low levels, such as were evident at days 0, 7, and 14. In
contrast, R. eutropha JMP134 remained culturable (107 CFU g of dry soil
1) in bioreactors.
Low-frequency transfer events are difficult to observe when the donor
survives at or above the order of magnitude of transconjugants because
of the high soil dilution that must be plated in order to obtain
distinct colonies. Thus, R. eutropha survival at this level
limited the detection of transconjugants. The percentage of
transconjugants detected in R. eutropha-inoculated bioreactors when the total population of presumptive
transconjugants in all inoculated treatments was 107
CFU g of dry soil
1 indicated that transconjugant
populations were not as prevalent as they were in bioreactors
inoculated with E. coli D11. This may be the result of
differences in the conjugation efficiencies of the two donors. Plasmid
pJP4 transfer has been found to be more efficient with E. coli JMP397 than with the natural host, R. eutropha
JMP134 (J. M. Pemberton, personal communication). Similarly,
E. coli D11 may be more efficient at transferring pJP4 than
is R. eutropha. This hypothesis was not tested in vitro due to the questionable applicability of these results to gene transfer events in a nonsterile soil environment. In addition, the difference in
the donors' abilities to derive benefit from the catabolic genes
encoded on the plasmid may play a role. Since E. coli D11 cannot degrade the herbicide, it may have been energetically favorable for it to cure itself of the plasmid. Although conjugation is believed
to be the mechanism of transfer, it is possible that transformation of
released plasmids also occurs. However, transformation of an intact
80-kb plasmid is unlikely, and yet all transconjugants analyzed
contained an 80-kb plasmid, suggesting that conjugation is the
mechanism of transfer. In contrast, plasmid pJP4 conferred a
competitive advantage to the R. eutropha donor, making the
maintenance of this plasmid within this microorganism favorable.
The increase in transconjugant populations in all treatments following
the second addition of 500 µg of 2,4-D g of dry soil
1
was likely the result of growth of transconjugants already present in
the bioreactor soil (Fig. 2). However, the appearance of previously undetected transconjugant populations suggested that additional transfer from the pJP4 donor to indigenous populations and/or successive gene transfer events between indigenous populations occurred.
Similarly, the diversity of ERIC fingerprints indicated that presumptive transconjugants did not arise simply from a single transfer event followed by growth but that numerous gene transfer events occurred at some point(s) in time (Fig. 4 and 5). The semiquantitative analysis of transconjugant diversity showed that transconjugant populations varied slightly depending on the treatment. However, many of the dominant recipient populations were the same regardless of the pJP4 donor or the contaminants present. Recipients with ERIC fingerprints A and A2 were prevalent in all treatment groups, and those with J and Z fingerprints were prevalent in most. Transconjugants were identified as members of one of two common soil genera, either Burkholderia or Ralstonia (Table 2). Burkholderia populations were predominant, with five different species being identified. In previous studies of gene transfer in Madera Canyon soil (12; Newby and Pepper, unpublished data), the majority of transconjugants were also found to belong to the genus Burkholderia. These recipients may be somehow predisposed to take up plasmid DNA, or they may simply be present in larger numbers in the soil and thus be more likely to come in contact with pJP4 donors. Taken together, these results suggested that the identity of potential soil recipient populations played a larger role in determining transconjugants than did the donor or the contaminant level.
It is significant that at distinct times in all inoculated soils, transconjugant numbers reached levels of approximately 10% of the culturable heterotrophic populations. In addition, absolute transconjugant numbers were probably higher than those observed. Only culturable transconjugants were detected by plating on 2,4-D indicator medium. Viable but nonculturable transconjugants, in addition to any transconjugants lacking the chromosomally encoded genes necessary for complete 2,4-D mineralization or unable to express the plasmid-encoded genes, would have escaped detection. Although there has been little direct evidence regarding the occurrence of maleylacetate reductase genes among indigenous populations, the ubiquity and diversity of soil microbial populations capable of mineralizing 2,4-D suggest that these genes are probably relatively common (8-10).
This study demonstrated the potential for increased rates of 2,4-D degradation following bioaugmentation of bioreactors (Fig. 1) and of microcosms (Fig. 2) with pJP4-harboring microorganisms. The impact of the different treatments on degradation is most easily seen in Fig. 3, in which degradation in all bioreactors and microcosms is compared. Although no presumptive transconjugants were detected on the 2,4-D indicator plates for control bioreactors or microcosms, degradation of 2,4-D in these treatment groups suggested the presence of indigenous 2,4-D degraders or consortia of microorganisms capable of carrying out the degradation. In addition, growth of light-purple pinpoint colonies on 2,4-D indicator plates for controls was indicative of the presence of such populations. The increased 2,4-D degradation rate in bioreactors inoculated with R. eutropha JMP134 can be explained by the fact that this bacterium has a chromosomal complement to the genes on plasmid pJP4 that enable it to mineralize 2,4-D. This catabolic ability undoubtedly contributed to the establishment of a competitive niche for the inoculant. In contrast, the E. coli pJP4 host does not contain this complement and, thus, cannot completely mineralize the herbicide. The inability of E. coli D11 to degrade 2,4-D was reflected by similar levels of 2,4-D degradation in soils inoculated with this microorganism and in controls.
Microbial populations within all treatment groups were found to degrade
2,4-D more rapidly in the microcosms respiked with 2,4-D (Fig. 2) than
within corresponding bioreactors (Fig. 1). Increased degradation rates
upon reexposure to a contaminant have been well documented. There are
several plausible explanations for this. For instance, during initial
herbicide exposure, a favorable niche for microorganisms capable of
degrading 2,4-D might have been established, and thus their numbers
increased. It is also possible that genes involved in degradation were
turned on or mutated. In yet another scenario, plasmid pJP4 may have
been transferred to indigenous populations in inoculated soils. The
rapid degradation of 2,4-D in all microcosms masked any lag in
degradation that may have resulted from the presence of Cd. In contrast
to bioreactor results, degradation of 2,4-D was faster in soils
inoculated with E. coli D11 than in R. eutropha
JMP134-inoculated soils. This reversal in relative rates of 2,4-D
degradation may be attributed to the presence of different populations
of pJP4 hosts and, thus, 2,4-D degraders. In E. coli
D11-inoculated bioreactors, substantial populations of transconjugants
(106 CFU g of dry soil
1) persisted at the
time soil was removed and respiked with 2,4-D for setup of microcosms.
These indigenous pJP4 hosts were well adapted to the soil environment.
At the same time, R. eutropha JMP134 remained culturable
(107 CFU g of dry soil
1) in bioreactors
inoculated with that microorganism, limiting detection of
transconjugants. However, visual examination of low-dilution 2,4-D
indicator plates suggested that there were about 103 CFU of
presumptive transconjugants g of dry soil
1 in these
treatment groups. Increased rates of 2,4-D degradation upon a second
herbicide exposure probably resulted, at least in part, from the
catabolic activity of these transconjugant populations. These results
suggest that indigenous plasmid hosts (transconjugants) can be more
effective remediators than an inoculated host, even when initially
present in smaller numbers.
The minimal impact of Cd on 2,4-D degradation and on gene transfer
observed in this study was not surprising. Josephson and Pepper found
that complete degradation of 2,4-D in Madera Canyon soil inoculated
with 105 CFU of R. eutropha JMP134 g of dry
soil
1 was delayed only 1 week at Cd amendment levels of
60, 120, and 240 µg g of dry soil
1 (unpublished data).
Furthermore, sorption isotherm studies with 100 µg of Cd added g of
dry Madera Canyon soil
1 revealed that less than 1 ppm of
the added Cd was bioavailable (K. L. Josephson, personal
communication). However, 100 µg of Cd g of dry soil
1 is
much higher than background levels and thus can be considered significant contamination.
The results from this field study are significant from a microbial
ecology standpoint for a number of reasons. This study demonstrated
that Cd, at a level of 100 µg g of dry soil
1, did not
significantly influence 2,4-D degradation or transconjugant evolution.
Furthermore, inoculation with R. eutropha significantly increased the rate of 2,4-D degradation in bioreactors, while inoculation of bioreactors with E. coli did not result in an
increased rate of degradation relative to that of controls. The
enhanced degradation of 2,4-D in all treatment groups upon reexposure
to 2,4-D suggested microbial adaptation to 2,4-D. Interestingly, the
microbial population from the E. coli-inoculated bioreactor more rapidly degraded 2,4-D upon reexposure to the pollutants in a
microcosm than did reexposed R. eutropha-inoculated soil. This observation suggests the interesting possibility that the diversified transconjugant population generated from E. coli
inoculation is better suited for subsequent 2,4-D degradation than is
the R. eutropha-inoculated soil, in which R. eutropha itself remained a predominant pJP4 host. These results
support the premise that bioaugmentation with plasmid-bearing organisms
may be particularly useful due to the possibility of gene transfer to
indigenous populations. In addition, they suggest that selection of the
donor for inoculation may play a significant role in the effectiveness
of the bioaugmentation effort.
| |
ACKNOWLEDGMENTS |
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Special thanks to the Coronado National Forest for granting a permit to collect Madera Canyon soil for use in this study and to Jessica Snider and Christine Stauber for assistance with this study.
This work was supported by NIEHS Basic Research Superfund grant 5 P42 ESO4940-09.
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FOOTNOTES |
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* Corresponding author. Mailing address: Department of Microbiology and Immunology, Shantz Bldg. No. 38, Rm. 429, University of Arizona, Tucson, AZ 85721. Phone: (520) 626-8292. Fax: (520) 621-1647. E-mail: dnewby{at}ag.arizona.edu.
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