Applied and Environmental Microbiology, January 2001, p. 300-306, Vol. 67, No. 1
0099-2240/01/$04.00+0 DOI: 10.1128/AEM.67.1.300-306.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Department of Microbiology, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, NL-9750 AA Haren, The Netherlands
Received 10 July 2000/Accepted 18 October 2000
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ABSTRACT |
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The demethylation of the algal osmolyte
dimethylsulfoniopropionate (DMSP) to methylthiopropionate (MTPA)
by (homo)acetogenic bacteria was studied. Five Eubacterium
limosum strains (including the type strain), Sporomusa
ovata DSM 2662T, Sporomusa sphaeroides
DSM 2875T, and Acetobacterium woodii DSM
1030T were shown to demethylate DMSP stoichiometrically to
MTPA. The (homo)acetogenic fermentation based on this demethylation did not result in any significant increase in biomass. The analogous demethylation of glycine betaine to dimethylglycine does support growth
of acetogens. In batch cultures of E. limosum PM31 DMSP and
glycine betaine were demethylated simultaneously. In mixed substrates
experiments with fructose-DMSP or methanol-DMSP, DMSP was used rapidly
but only after exhaustion of the fructose or the methanol. In
steady-state fructose-limited chemostat cultures (at a dilution
rate of 0.03 h
1) with DMSP as a second reservoir
substrate, DMSP was biotransformed to MTPA but this did not result in
higher biomass values than in cultures without DMSP; cells from such
cultures demethylated DMSP at rates of approximately 50 nmol
min
1 mg of protein
1, both after growth in
the presence of DMSP and after growth in its absence. In cell extracts
of glycine betaine-grown strain PM31, DMSP demethylation activities
of 21 to 24 nmol min
1 mg of protein
1 were
detected with tetrahydrofolate as a methyl acceptor; the activities
seen with glycine betaine were approximately 10-fold lower. A
speculative explanation for the demethylation of DMSP without an
obvious benefit for the organism is that the DMSP-demethylating activity is catalyzed by the glycine betaine-demethylating enzyme and
that a transport-related factor, in particular a higher energy demand
for DMSP transport across the cytoplasmic membrane than for glycine
betaine transport, may reduce the overall ATP yield of the fermentation
to virtually zero.
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INTRODUCTION |
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Certain marine sulfate-reducing
bacteria belonging to the Desulfobacterium-Desulfobacter
cluster of the
-proteobacteria and possessing the oxidative CO
dehydrogenase pathway for acetyl-coenzyme A oxidation use the algal
osmolyte dimethylsulfoniopropionate [DMSP;
(CH3)2-S+-CH2-CH2-COO
]
for growth and convert it to methylthiopropionate (MTPA;
CH3-S-CH2-CH2-COO
40). These bacteria use a specific
DMSP-tetrahydrofolate methyltransferase for the demethylation reaction
(22, 23). Glycine betaine
[(CH3)3-N+-CH2-COO
],
an N-containing structural analog of DMSP, was demethylated to
dimethylglycine
[(CH3)2-N-CH2-COO
]
by these bacteria, but in cell extracts no activity was detected with
tetrahydrofolate as a methyl acceptor and glycine betaine as a
substrate. Both glycine betaine and DMSP are important osmolytes (2, 7, 13). DMSP is produced by many marine algae and some
plants, where it is synthesized from methionine (12, 36). The occurrence of high DMSP concentrations in certain types of biological material and the possibility to convert DMSP to other sulfur-containing compounds, including MTPA, by using bacterial cultures, make DMSP of potential interest for the natural flavor industry (16, 17).
(Homo)acetogenic bacteria synthesize acetyl-coenzyme A from C1 compounds with involvement of the reductive CO dehydrogenase pathway, which is the reverse of the route used by the sulfate-reducing bacteria for acetyl-coenzyme A oxidation. The acetyl-coenzyme A can be converted to acetate or to acetate plus longer acids such as butyrate (19). (For a discussion of the term acetogenic bacteria or acetogens, see reference 10). Since the discovery in 1981 that the acetogenic bacterium Eubacterium limosum can demethylate glycine betaine to dimethylglycine, with acetate and butyrate as fermentation products (34), many other acetogenic bacteria have been shown to grow by demethylation of betaine (19). A possible involvement of organisms such as E. limosum in DMSP demethylation in anoxic sediments was already suggested by Kiene and Taylor (27), but without direct experimental evidence. Recently, in our laboratory a slow demethylation of DMSP to MTPA was demonstrated in experiments with an E. limosum-like strain isolated from intertidal mud; growth of this strain was very poor (40). We show here that under certain conditions the biotransformation of DMSP to MTPA can be carried out at appreciable rates by this strain and by a number of other acetogenic bacteria; this process, however, does not support growth, in contrast to the analogous demethylation of glycine betaine.
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MATERIALS AND METHODS |
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Microorganisms, media, and cultivation. Bacterial strains were obtained from the Deutsche Sammlung von Mikroorganismen und Zellkulturen (Braunschweig, Germany) unless otherwise indicated. E. limosum PM31 (isolated by J. H. F. G. Heijthuijsen in our laboratory 20), E. limosum DSM 20543T, E. limosum DSM 20517, E. limosum DSM 2594 (strain 11A), "Butyribacterium methylotrophicum" Marburg (obtained from J. G. Zeikus), and Sporomusa sphaeroides DSM 2875 were grown in 120-ml vials containing 50 ml of medium with the following composition (per liter): 1.0 g of NaCl, 1.0 g of MgSO4 · 7H2O, 0.5 g of NH4Cl, 0.3 g of KCl, 0.1 g of CaCl2 · 2H2O, 1.0 g of yeast extract (Difco, Detroit, Mich.), and 0.5 mg of resazurin. The medium was also composed of 0.1 µM Na2SeO3, 0.1 µM Na2 WO4, and 1 ml of a trace elements solution (28). After autoclaving, the basal medium was supplemented with 1 ml of a vitamin solution (42), 2 ml of a phosphate buffer (KH2PO4, 1.58 M; K2HPO4, 0.93 M), 50 ml of 1 M sodium bicarbonate, 4 ml of 0.5 M sodium sulfide, and substrate as indicated. The vials were gassed with an oxygen-free mixture of N2-CO2 (80:20 [vol/vol]). Incubation temperature was 37°C, except for S. sphaeroides (30°C). Acetobacterium woodii DSM 1030 and Sporomusa ovata DSM 2662 were cultured at 30°C in medium 135 and medium 311, respectively, as described previously (9).
DMSP and glycine betaine demethylation by cell
suspensions and chemostat cultures.
For cultivation of strain PM31
in fructose-limited chemostats, a culture vessel with a working volume
of 730 ml was used. The following conditions were employed: a dilution
rate of 0.03 h
1, a reservoir medium (for composition see
above) with 3 mM fructose, pH 7.2 (kept constant by automatic titration
with 2 N NaOH), a temperature of 37°C, a gas phase above the
reservoir and culture N2-CO2 (80:20
[vol/vol]). The medium reservoir was slowly stirred to avoid a
possible loss of precipitated trace elements. At steady state (after at
least five volume changes) the medium feed was stopped, and DMSP from
an anoxic 1 M stock solution was added or cells were removed anoxically
from the culture vessel, and 50 ml was transferred into 120-ml vials in
an anaerobic glove box equipped with a palladium catalyst (R020; BASF,
Ludwigshafen, Germany) under an atmosphere of
N2-H2 (approximately 95:5 [vol/vol]). The
vials were gassed with N2-CO2 (80/20%
[vol/vol]) and used in experiments with protein synthesis inhibitors.
Cell suspension experiments with batch-grown strain PM31 were done with
anoxically harvested cells that had been grown on various
concentrations of glycine betaine or glycine betaine-DMSP. These cells
were washed once or twice with complete sulfide-reduced medium without
yeast extract or with anoxic 50 mM potassium phosphate buffer (pH 7.2) containing 2 mM dithiothreitol.
Cell extract preparation and enzyme measurements. Extracts of cells (3 to 10 mg of protein/ml) grown on medium with 15 mM DMSP, 15 mM glycine betaine, or 15 mM glycine betaine plus 15 mM DMSP were prepared under anoxic conditions as described by Hensgens et al. (21) with the following minor modifications: the cells were washed and suspended in 50 mM potassium phosphate buffer (pH 7.2) containing 2 mM dithiothreitol and passed three times through a French pressure cell. The enzyme assays were performed in an anaerobic glove box; the assay mixture consisted of 50 mM potassium phosphate buffer (pH 7.2), 2 mM dithiothreitol, 2.5 mM titanium(III)-10 mM nitrilotriacetic acid, 3 mM tetrahydrofolate, 0.2 mM cyanocobalamin, 2 mM ATP, 8 mM MgCl2, and cell extract in a total volume of 1 ml. After 10 min of incubation at 37°C, the reaction was started by the addition of 10 mM substrate. Reactions were stopped with 60 mM HCl and, after approximately 15 min, the reaction mixture was centrifuged (5 min, 2,000 × g) in the glove box. The supernatants were transferred to airtight vials, and the tetrahydrofolate and methyltetrahydrofolate concentrations were measured by high-performance liquid chromatography (HPLC).
rDNA sequencing and sequence comparison. DNA of strain PM31 and "B. methylotrophicum" for 16S rRNA gene sequence analysis was extracted and amplified as described previously (40). The PCR product was purified using the Wizard PCR purification system (Promega, Madison, Wis.) and subsequently sequenced on an ABI310 automated sequencer (Perkin-Elmer, Norwalk, Conn.) using the dye-terminator cycle sequencing method of Perkin-Elmer in combination with custom primers based on the conserved regions of the 16S rRNA gene. Reaction conditions for the cycle sequencing reaction were according to the manufacturer's manual. The similarity of the sequences was determined by alignment of 1,460 nucleotides using the DCSE program of De Rijk and De Wachter (8) and subsequently calculating the number of common nucleotides. The 16S ribosomal DNA (rDNA) sequence of E. limosum DSM 20543T was obtained from GenBank.
Analytical procedures. DMSP was determined as acrylate after conversion to dimethylsulfide and acrylate by overnight treatment with 1 M NaOH (44). Acrylate, MTPA, and mercaptopropionate were analyzed by HPLC (22). Mercaptopropionate was measured after reduction of the sample with up to 20 mM tributylphosphine. Betaine and dimethylglycine were measured as described elsewhere (18), with acetonitrile-water (80:20 [vol/vol]) as a mobile phase instead of acetonitrile with a 10 mM sodium phosphate buffer (pH 7.5). Tetrahydrofolate and methyltetrahydrofolate were measured by HPLC with UV detection at 280 nm as described by Stupperich and Konle (38). Homocysteine and methionine were assayed by HPLC after derivative formation with ortho-phthalaldehyde (11). Fructose was measured by HPLC using a Polyspher OA HY column (Merck, Darmstadt, Germany) and refractometric detection; the flow rate of the mobile phase (0.01 N H2SO4) was 0.6 ml/min. The detection limit for fructose was 20 µM. Protein in cell extracts was determined according to the method of Bradford (3) using the Bio-Rad reagent with bovine serum albumin as a standard. The protein content of whole cells was measured after treatment with 1 M NaOH at 100°C for 10 min according to the method of Lowry et al. (30). The optical densities (ODs) of cultures were measured in a 1-cm cuvette in a Starrcol colorimeter (Hoorn, The Netherlands) at 660 nm. An OD at 660 nm (OD660) value of 1.0 corresponds to 0.26 mg of protein per ml. Cell carbon was determined as described previously (18). Dimethyl sulfide and methanethiol were assayed by gas chromatography as described previously (41, 39).
Chemicals. DMSP was synthesized from acrylic acid and DMS (5) or obtained from CASS (Groningen, The Netherlands). MTPA was obtained by alkaline hydrolysis of its methylester (Aldrich, Steinheim, Germany). 5,6,7,8-Tetrahydrofolic acid was obtained from Sigma (St. Louis, Mo.) or Schircks Laboratories (Jona, Switzerland); 5-methyl-5,6,7,8-tetrahydrofolic acid was from Merck (Darmstadt, Germany). Cyanocobalamin was purchased from Sigma. Titanium(III)-nitrilotriacetic acid stock solutions were prepared according to the method of Moench and Zeikus (33).
Nucleotide sequence accession numbers. The 16S rDNA sequences of "B. methylotrophicum" and E. limosum PM31 were deposited with GenBank under accession numbers AF064241 and AF064242, respectively.
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RESULTS |
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Conversion of DMSP by pure cultures of acetogenic bacteria.
Recently, we reported that the acetogenic strain PM31, which had been
isolated from intertidal mud and had been tentatively identified as
E. limosum, was able to demethylate DMSP to MTPA, but growth
was very poor and the conversion was slow (40). Here we
describe in more detail the demethylation of DMSP by
this bacterium. When 5% of a culture (grown on 15 mM DMSP-15 mM
betaine) was inoculated into medium with 15 mM DMSP and 0.1% yeast
extract, 5.6 mM MTPA was produced from 6.0 mM DMSP after 163 h of
incubation (Fig. 1). Other products in
this culture were 1.7 mM acetate and 0.7 mM butyrate. Other possible
sulfur-containing endproducts such as dimethylsulfide, methanethiol,
and mercaptopropionate were not detected. The increase in OD in these
cultures (OD660 = 0.12) was not higher than in
cultures without DMSP and therefore was most likely due to utilization
of components from the yeast extract. This increase took place during
the first 40 h; in this period only 1.4 mM MTPA had been formed,
again indicating that growth could not have been supported by DMSP
demethylation. Incubations with 15 mM glycine betaine
resulted in a maximum OD of 0.28 (Fig. 1A), a value considerably above
the control with only yeast extract; products of the growth on glycine
betaine were 16.1 mM dimethylglycine, 6.6 mM acetate, and 0.8 mM
butyrate. The growth yield on glycine betaine in this experiment was
3.0 g (dry weight) of cells/mol of glycine betaine. In earlier
work (40) DMSP had been tested for its use as a growth
substrate by acetogens; since it now appeared that DMSP utilization was
not associated with growth, we reinvestigated a possible
biotranformation of DMSP to MTPA by other acetogens. Besides strain
PM31, several other acetogenic bacteria were indeed found to be able to
demethylate DMSP; E. limosum DSM 20543T,
E. limosum DSM 20517, E. limosum DSM 2594, S. ovata DSM 2662, S. sphaeroides DSM 2875, A. woodii DSM 1030, and "B.
methylotrophicum" produced MTPA from DMSP at rates that are
comparable with the DMSP demethylation rates in
cultures of strain PM31. Also, cultures of these strains showed no
significant increase in optical density when DMSP was added to the
medium. This is in agreement with the observation of Van der Maarel et
al. (40) that these pure cultures were unable to grow on
DMSP. Importantly, with all of these bacteria the
demethylation of glycine betaine to
dimethylglycine did support growth.
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Characteristics and phylogenetic position of strain PM31. Strain PM31 was chosen as the model organism for the detailed studies described below because it originates from an environment where DMSP is known to occur. Strain PM31 is strictly anaerobic, salt tolerant, nonmotile, nonsporeforming, gram positive, and rod shaped (0.6 to 0.9 µm by 2.0 to 3.0 µm); it was isolated from an enrichment culture inoculated with anoxic intertidal sediment of the Wadden Sea (The Netherlands) with 10 mM vanillate as a substrate (20). It showed good growth in freshwater medium at 37°C on several substrates, including methanol, H2-CO2 (80:20 [vol/vol]), glucose, fructose, various methoxylated aromatic compounds, and glycine betaine. Acetate and butyrate were the main fermentation products.
The 16S rRNA genes of strain PM31 and "B. methylotrophicum" were found to differ in only one nucleotide position (99.9% similarity). Based on their 16S rRNA gene sequences, strain PM31 and "B. methylotrophicum" are very closely related to the type strain of E. limosum (similarities of 99.5 and 99.4%, respectively). These data and its phenotypic properties support assignment of strain PM31 to E. limosum. It is also evident that "B. methylotrophicum" is in fact an E. limosum strain, which is in agreement with the phenotypic similarity. Its major difference from E. limosum, namely, its ability to produce spores, has been questioned by Cato et al. (4).Sequential and simultaneous utilization of substrates by batch
cultures of E. limosum PM31.
Demethylation of DMSP and
glycine betaine in cultures of strain PM31 occurred simultaneously
(Fig. 1B). In cultures inoculated with 5% of a glycine betaine (15 mM)-DMSP (15 mM) pregrown culture, the change in
dimethylglycine concentration was similar to those of
cultures supplemented with only glycine betaine; the production of MTPA
was slower. In such cultures glycine betaine and DMSP were demethylated
stoichiometrically to dimethylglycine and MTPA, respectively. Under these conditions the demethylation
of DMSP was faster than in cultures supplemented with only DMSP (Fig. 1B). In batch fermentor cultures (pH kept constant at 7.2) with medium
containing 15 mM fructose and 30 mM DMSP, strain PM31 rapidly demethylated DMSP after a growth-supporting utilization of the fructose
(Fig. 2); during the more or less linear
decrease in the DMSP concentration between 40 and 60 h the
demethylation rate was 50 nmol min
1 mg of
protein
1. Similarly, in experiments with methanol and
DMSP as substrates, DMSP was only demethylated after virtual exhaustion
of the methanol. Also in these experiments, no or negligible growth was
observed when DMSP was demethylated. In cultures of strain PM31 with
fructose and glycine betaine, first fructose was used and subsequently the glycine betaine was demethylated. All other tested acetogenic bacteria (see Materials and Methods) also showed faster DMSP
demethylation in media containing a true growth
substrate and DMSP.
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DMSP and glycine betaine demethylation by cells of
E. limosum strain PM31.
Cells obtained from
glycine betaine-DMSP-yeast extract- or DMSP-yeast
extract-grown batch cultures, washed in medium without yeast
extract, did not demethylate DMSP or, after a lag phase of
many hours, did so at rates lower than 5 nmol min
1 mg of
protein
1 despite the use of anaerobic techniques
throughout the manipulations. To obtain active cells, experiments were
carried out with fructose-limited chemostat cultures, where at steady
state at a dilution rate of 0.03 h
1 the medium flow was
stopped and DMSP was added. At steady state the fructose concentration
was below the detection level (<20 µM). DMSP
demethylation occurred at a rate of approximately 50 nmol min
1 mg of protein
1 and started
immediately after the addition of DMSP. Over the period during which
the DMSP was demethylated there was a small OD660 decrease,
again showing that DMSP did not support growth. The apparent
Km value for DMSP was approximately 2 mM as
calculated from the substrate depletion curve. When DMSP and glycine
betaine, both at 10 mM, were added to a fructose-limited chemostat
culture, both compounds were demethylated at the same time at
similar rates (data not shown).
1, at steady state there was 0.9 mM DMSP left and 8.0 mM MTPA produced; the OD values of
fructose-limited cultures with DMSP in the reservoir were almost the
same as without DMSP (0.47 versus 0.50). When 10 mM DMSP was added to
such a culture immediately after stopping the medium flow,
approximately the same DMSP demethylation rate was
found as with the culture grown in the absence of DMSP (53 nmol
min
1 mg of protein
1). These results show
that the DMSP demethylation system does not require
induction by DMSP. This was confirmed by using tetracycline as an
inhibitor of de novo protein synthesis; other inhibitors of protein
synthesis did not block growth at all (rifampin at 4 µg/ml) or
inhibited DMSP demethylation completely in cells that were able to demethylate DMSP (chloramphenicol at 25 to 100 µg/ml). Tetracycline (20 µg/ml) blocked the growth of strain PM31 on fructose and strongly reduced the rate of fructose degradation. When cells were
growing in batch culture in a medium with initial concentrations of 3 mM fructose and 20 mM DMSP and already producing MTPA (after exhaustion
of the fructose), the addition of 20 µg of tetracycline per ml did
not affect the demethylation of DMSP. When, after
growth on fructose (in the absence of DMSP), DMSP and tetracycline were added simultaneously, strain PM31 was still able to demethylate DMSP.
With cells obtained from fructose-limited chemostat cultures similar
results were obtained.
Yeast extract is known to contain 1 to 3% (wt/wt) glycine betaine
(13); 1 g of yeast extract per liter in the medium
may therefore lead to an initial glycine betaine concentration of 0.27 mM. Such a concentration might be sufficient for the induction of the
glycine betaine demethylation system if it is inducible and, because of the structural similarity of DMSP and glycine betaine,
of a specific DMSP demethylating enzyme if such an enzyme exists. We
therefore tried to culture strain PM31 in chemostat cultures without
yeast extract in the reservoir medium. After 9.4 volume changes there
was considerably more wall growth and a lower OD (0.3) than under
culture conditions with yeast extract present, but the residual
fructose concentration remained below the detection limit. These cells
were able to demethylate DMSP in the presence of 10 µg of
tetracycline per ml, albeit very slowly (approximately 1 nmol
min
1 mg of protein
1; the control without
tetracycline demethylated DMSP at 7.5 nmol min
1 mg of
protein
1).
Effects of MTPA and dimethylglycine on the growth
of E. limosum strain PM31.
Dimethylglycine and MTPA
both have an inhibitory effect on the growth on betaine of strain PM31
(Fig. 3). This effect was small at
initial dimethylglycine or MTPA concentrations of 5 mM but became pronounced at initial concentrations of 10 mM or higher. The
effect of MTPA was not stronger than that of
dimethylglycine. The effect on growth with 3 mM
fructose appeared to be smaller than on growth with betaine, but during
growth on betaine an increasing concentration of
dimethylglycine is produced. Up to 10 mM
dimethylglycine or MTPA hardly affected the growth on
fructose, but 20 mM dimethylglycine or MTPA strongly
reduced the growth rate, and the final OD of the culture was
approximately 25% lower than in the control. These data exclude a far
stronger inhibitory effect of MTPA than that of
dimethylglycine on the growth as an explanation for the
inability of strain PM31 to utilize DMSP as a growth-supporting
substrate.
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DMSP demethylating activities in cell extracts of E. limosum PM31.
DMSP-tetrahydrofolate methyltransferase was
identified as the key enzyme in DMSP demethylation in
sulfate-reducing bacteria (22). Using a modified assay
system we also detected DMSP-tetrahydrofolate methyltransferase
activity in the acetogenic strain PM31, but the activities were
lower than in the sulfate reducers (Table 1). DMSP-tetrahydrofolate
methyltransferase activities of approximately 21 to 24 nmol
min
1 mg of protein
1 were detected with cell
extracts of glycine betaine- or glycine betaine-DMSP-grown strain PM31.
Activities with glycine betaine as substrate were significantly lower,
even in cells grown on glycine betaine (Table 1). No activity was
detected without titanium-nitrilotriacetic acid. ATP and
Mg2+ were not obligatory for activity but did stimulate the
DMSP demethylating activities in cell extracts of strain PM31. When
cyanocobalamin was omitted from the assay mixture, DMSP demethylating
activities were approximately 10 to 30% lower. Hydroxycobalamin did
not have a stimulatory effect on the DMSP demethylation
activities. In extracts of cells that had been grown on fructose or on
fructose and DMSP (harvested when they were demethylating DMSP) no or
negligible DMSP-tetrahydrofolate methyltransferase (and no activity
with betaine) could be detected.
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DISCUSSION |
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This study shows that demethylation of DMSP to
MTPA under anoxic conditions can not only be performed by certain
sulfate-reducing bacteria of the
Desulfobacter-Desulfobacterium cluster of the
proteobacteria (40) but also by several acetogenic
bacteria. These acetogenic bacteria are also able to demethylate the
N-containing analog of DMSP, glycine betaine but, unlike DMSP, glycine
betaine was a growth substrate, whereas DMSP was only biotransformed
without supporting growth. In view of this finding and the poor
Km value for DMSP (millimolar range) of E. limosum PM31 compared to the value for the sulfate-reducing
bacteria (micromolar range), the observed demethylation
of DMSP by such acetogens is probably of no or very limited ecological
significance. The demethylation of DMSP to MTPA at a
rate of 50 nmol min
1 mg of protein
1, as
shown with strain PM31, is of clear biotechnological relevance, however
(16). Biologically produced MTPA can be used in the production of natural flavors.
Since the demethylation of DMSP is of no obvious benefit for the organism, the process is most probably catalyzed by an enzyme which is normally involved in another demethylation of a structurally related true substrate such as glycine betaine. In analogy with the biochemistry of the metabolism of other methylated substrates in acetogens (methanol, methoxylated aromatics; see references 25, 26, and 38), one would expect the presence of a DMSP- and a glycine betaine-demethylating enzyme which would feed the methyl group into the methyl branch of the Wood-Ljungdahl (reductive CO dehydrogenase) pathway for acetyl-coenzyme A synthesis. Recently, the O-demethylase from Acetobacterium dehalogenans was purified and shown to consist of four components that were all required for the efficient catalysis of the methyl transfer from phenyl methyl ethers to tetrahydrofolate (25, 26). Purification of the DMSP- and betaine-demethylating system(s) will be necessary to reveal whether these systems are indeed identical and of a similar complexity to the O-demethylating system. The low activities of a glycine-betaine methyltransferase we detected are only a first indication for the nature of the methyltransferase reaction. The media used contained yeast extract because the strain grew poorly in its absence; therefore, glycine betaine was always present in low concentrations in the media. Under these conditions DMSP demethylation by cells grown under fructose limitation does not require de novo protein synthesis. Furthermore, betaine and DMSP were demethylated simultaneously. The low activities of the methyltransferase reaction with glycine betaine did not allow a detailed kinetic analysis of the effect of DMSP on the activity. There are some examples in the literature that show that DMSP can indeed be a substrate (and sometimes with higher activities!) for a betaine-utilizing enzyme, but this is not a general rule. Mammalian betaine-homocysteine methyltransferase is known to be active toward DMSP (14). In Sinorhizobium meliloti dimethylsulfonioacetate, the acetate analog of DMSP, is demethylated via the glycine betaine demethylating system, which in this organism is thought to be a glycine betaine-homocysteine methyltransferase (37), but DMSP is not demethylated by S. meliloti and is used only as an osmoprotectant (35). Similarly, in extracts of Pseudomonas denitrificans betaine and dimethylsulfonioacetate can function as methyl donors for homocysteine methylation, whereas DMSP cannot (43). In the sulfate-reducing bacterium strain WN the demethylation of DMSP is catalyzed by a DMSP-tetrahydrofolate methyltransferase which is not active toward glycine betaine (22, 23).
The utilization of both DMSP and glycine betaine is completely inhibited as long as fructose is present in low millimolar concentrations but not when fructose is the limiting substrate in chemostat cultures. We do not know what mechanism underlies this phenomenon in our strain. In experiments with a different strain of E. limosum, Genthner and Bryant (15) observed a similar repression of the utilization of methanol, hydrogen, and isoleucine by 2 mM glucose, leading to their utilization after the glucose and a clear lag phase.
Why these bacteria grow on glycine betaine and show marginal or no growth on DMSP can only be speculated about. At the moment there are no reasons to believe that the intracellular conversion of DMSP and carbon dioxide to MTPA, acetate, and butyrate yields less ATP than the analogous fermentation of glycine betaine and carbon dioxide. Our value of the molar growth yield on glycine betaine was considerably lower (approximately 3.0 g [dry weight] of cells/mol) than the value (9 g/mol) reported by Müller et al. (34) for another strain of E. limosum, but the order of magnitude in both cases shows that less than one ATP per betaine is produced which can be used for biosynthesis (cf. reference 1). Three factors might contribute to differences in the amount of ATP available for biosynthesis as a result of betaine and DMSP fermentation: differences in the energetic costs of betaine and DMSP uptake, differences related to product (dimethylglycine and MTPA) export, and maintenance energy effects. The transport of DMSP across the membrane might be energetically more expensive than the transport of glycine betaine. How DMSP and glycine betaine are transported in E. limosum PM31 is not known, but both in Escherichia coli and Bacillus subtilis different mechanisms for glycine betaine transport exist (24, 31). In E. coli glycine betaine can be transported across the membrane by the constitutive, low-affinity, proton-motive-force-driven system ProP and the inducible, high-affinity, ATP-consuming system ProU (31, 32). Differences in the energetic costs of glycine betaine and DMSP transport in E. limosum might strongly affect the growth yield. If DMSP would be transported mainly by an ATP-consuming system and glycine betaine mainly in symport with one proton, a considerable difference in molar growth yield might be expected. Interestingly, recent work has shown that in B. subtilis DMSP is not taken up by the proton-motive-force-driven secondary betaine transporter OpuD; DMSP is taken up only by the ABC transporters OpuA and OpuC [G. Nau-Wagner, M. Jebbar, C. Blanco, and E. Bremer, Abstr. 2nd Int. Symp. Biol. Environ. Chem. DMS(P) Related Compounds, p. 14, 1999]; however, in E. coli DMSP is taken up by both ProP and ProU (6). Differences in the mechanism of export of dimethylglycine and MTPA from the cells might also play a role. Because of the stronger structural similarity of butyrate and MTPA, the energy-consuming export system described for butyrate in E. limosum might also be involved in MTPA export and not in dimethylglycine export (29). Maintenance energy is known to affect the molar growth yields at low specific growth rates; the rates of DMSP and glycine betaine utilization did not differ so much that maintenance energy effects alone can easily explain the lack of growth on DMSP.
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ACKNOWLEDGMENTS |
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This work was supported by Quest International, b.v., Naarden, The Netherlands.
We thank Lubbert Dijkhuizen for valuable suggestions and comments, Marc van der Maarel for sequencing the 16S rRNA genes, and Irma van der Veen and Manny Nienhuis for technical assistance.
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FOOTNOTES |
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* Corresponding author. Mailing address: Department of Microbiology, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, P.O. Box 14, NL-9750 AA Haren, The Netherlands. Phone: 31-503632163. Fax: 31-503632154. E-mail: T.A.Hansen{at}biol.rug.nl.
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