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Applied and Environmental Microbiology, October 2001, p. 4594-4602, Vol. 67, No. 10
0099-2240/01/$04.00+0 DOI: 10.1128/AEM.67.10.4594-4602.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Survival Response and Rearrangement of Plasmid DNA
of Lactococcus lactis during Long-Term Starvation
Woojin S.
Kim,*
Ji
Hyeon
Park,
Jun
Ren,
Ping
Su, and
Noel W.
Dunn
Department of Biotechnology, University of
New South Wales, Sydney, NSW 2052, Australia
Received 20 April 2001/Accepted 30 July 2001
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ABSTRACT |
The survival response of Lactococcus lactis during
long-term starvation was investigated. The cells were cultured with
different levels of glucose (the sole energy source) and either were
kept in the resultant spent medium or transferred to fresh medium
(without glucose) for up to 2 years. The survival of the cells during
starvation was not dependent on the nature of transition phase, as
expected, but on the nature of medium in which the cells were kept. The proliferation of cells, despite the apparent lack of glucose, could
have been due to some cells being able to utilize the small amounts of
peptides still present in the spent medium or to use energy sources
provided by the breakup of dead cells. The 1- and 2-year-old cultures
contained cells with vastly changed morphotypes. When these isolates
were examined, it was revealed that the original plasmids present in
the parent were rearranged in a certain way, and an entirely new
plasmid was generated. Changes were also evident in the chromosomal DNA
and in gene expression. Furthermore, all of the isolates exhibited a
growth advantage relative to the parent cells when grown in
energy-limiting media. When they were tested against different types of
stresses, they exhibited a higher resistance against the bile salt and
hydrogen peroxide stresses compared to the parent. Because of the
similar changes observed in the 2-year-old isolates, a similar survival
strategy may be operational in those cells that survive for that length
of time.
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INTRODUCTION |
When faced with a nutrient-limiting
situation (i.e., starvation), bacterial cells respond by undergoing
numerous changes that facilitate survival during starvation (13,
22, 24). The response to starvation varies considerably from
species to species. Some bacteria respond to starvation by undergoing
differentiation (i.e., sporulation). Spores can remain dormant for long
periods of starvation, and they are usually unaffected by the prevalent environmental factors or stresses (25, 31).
Nondifferentiating bacteria respond to starvation in a less dramatic
way, and the only obvious morphological change appears to be a gradual
reduction in the cell size (14). However, they too undergo
significant physiological changes, and these changes allow them to
survive long periods of starvation and to withstand stresses (6,
10, 11, 16, 23). However, unlike spores, nondifferentiating cells still maintain a low level of metabolism during starvation (10).
During long periods of starvation, spontaneous mutations would be
likely to occur, and the starvation condition may provide the necessary
selection pressure for certain mutant cells to proliferate. It has been
shown that mutant cells of Escherichia coli readily arose
during starvation and that different mutant cells coexisted in the same
starving cultures (5, 30). Mutations giving rise to
heterogeneous populations were shown to be random by the fact that the
same cells cultured under an identical initial condition resulted in
different mutant cells. It has been shown that when cells from a
10-day-old culture were mixed with cells from a 1-day old culture, the
cells from the 10-day-old culture outcompeted the cells from the
1-day-old culture and eventually overtook the whole culture as the only
viable cells in that culture. It has been proposed that the cells from
the 10-day-old culture possess what are termed
growth-advantage-in-stationary-phase (GASP) properties (5,
30). The survival of cells during starvation is therefore not
only affected by the inherent changes that occur when cells enter
stationary phase, but also by spontaneous mutations that occur
naturally during starvation.
It has been proposed that the nature of the period prior to the onset
of starvation may also affect how cells respond to starvation (15). The period between the log phase and stationary
phase is referred to as the transition phase, and the nature of the transition phase is dependent on the amount of nutrient in the culturing media. Large amounts of nutrient (e.g., glucose) support relatively fast growth and high cell densities and allow accumulation of end products. In cultures grown to high cell densities, the transition phase is sudden and rapid because of the rapid exhaustion of
nutrient. In addition, the accumulation of end products restricts growth and therefore contributes to the rapid transition phase. However, limiting amounts of nutrient (e.g., phytone peptone) permit
slow growth, low cell densities, and only slight accumulation of end
products. Under such circumstances, the transition phase is gradual and
protracted. Such a transition phase may allow cells to assess the
nutrient-limiting situation and to respond in readiness for the
inevitable starvation.
Lactococcus lactis is commercially an important group of
bacteria because of its extensive usage in the manufacture of dairy products and production of antimicrobials used as natural food preservatives (9). A possible application of L. lactis is now being extended to the area of medicine, as a vaccine
delivery vehicle to the gastrointestinal tract (29). These
cells, however, have to encounter nutrient-limiting situations and
various stresses during the industrial processes and during passage
through the gastrointestinal tract, and their viability and activity
could be seriously affected by such conditions. A greater understanding of how some cells survive starvation is of interest and may lead to
development of strategies for improved application of these cells both
industrially and therapeutically. In this communication, the survival
response of L. lactis during long-term starvation was
studied. The effect of starvation on cell survival and on mutant
populations was investigated. The isolates that had survived 1 and 2 years of starvation were examined in terms of plasmid and chromosomal
DNA, gene expression, and morphology. The investigation into the effect
of starvation on plasmid DNA is of value because of the important
commercial traits encoded on plasmids in L. lactis. The
isolates were also tested for any growth advantage under
energy-limiting conditions and for any improved response against
different stresses.
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MATERIALS AND METHODS |
Bacterial strain, media, and growth.
The strain used was
Lactococcus lactis subsp. lactis LL41-1 (CRC
Culture Collection). It was grown at 30°C in M17 buffered medium (pH
7.15) (26) supplemented with the standard 0.5% glucose (M17GStd). In the glucose-limiting experiments, 0.025%
glucose (M17GLim) was used. For growth analysis, an
overnight culture was inoculated into M17GStd and
M17GLim (100 ml) at an optical density at 600 nm
(OD600) of approximately 0.1, and samples were collected
hourly for OD600 determination. For generation of working liquid cultures, a single colony was used from a freshly prepared plate
culture, which had been streaked with a stock culture.
Monitoring CFU following cultivation in different media.
The
strain was cultivated in M17GStd (100 ml), and once the
stationary phase was reached, the number of CFU was determined every 4 days for the first 50 days and then every 50 days thereafter. This
procedure was done by serially diluting the samples (100 µl) in
saline and plating the cells onto M17GStd plates. In a second experiment, M17GLim (100 ml) was used instead of
M17GStd. In a third experiment, cells were grown to
stationary phase in M17GStd (100 ml), and then the cells
were harvested by centrifugation and transferred into M17 (no glucose)
(100 ml). For long-term starvation, the cultures were maintained at
30°C unaerated and stored in 250-ml bottles in the dark.
Microscopy.
Cells from plate colonies were spread sparingly
onto microscope slides, stained with crystal violet, and examined with
a phase-contrast microscope (Olympus BH) at ×100 magnification. The
images were captured with a camera attached to the microscope.
Statistical analysis of the data was performed with Student's
t test, and statistical significance was accepted at the
P < 0.05 level of probability.
Plasmid DNA isolation and Southern hybridization.
Plasmid
DNA was isolated by a method previously described (1) and
was resolved on a 0.8% agarose gel at 80 V for 4 h. Southern hybridization was done with a nonradioactive enhanced chemiluminescence (ECL) labeling system from Amersham following the manufacturer's instructions.
Preparation of chromosomal DNA and PFGE.
Cells were grown in
M17GStd (10 ml) until the OD600 was ~0.6. At
this point, chloramphenicol was added to the culture at a final
concentration of 100 µg/ml, and the culture was further incubated for
1 h. The cells (1.5 ml) were harvested by centrifugation and
washed once in 1 M NaCl-10 mM Tris-Cl (pH 7.6). The cells were then
resuspended in 150 µl of the same buffer and kept at 50°C. An equal
volume of 2% agarose (Bio-Rad) prepared in the same buffer was mixed
with the cells and poured into a 100-µl casting mold. It was kept at
4°C for 10 min for the agarose plugs to set. Then, the plugs were
transferred into 1 ml of 30 mM Tris-25 mM EDTA-250 mM NaCl (pH 8.0)
containing 20 mg of lysozyme and 58 µl of 1 M sucrose and incubated
at 37°C for 4 h. After the incubation, 40 µl of 20% sodium
dodecyl sulfate (SDS) (final concentration of 0.8%) was added, and the
mixture was incubated at 60°C for 30 min. Then, 150 µl of
proteinase K (Roche) at a final concentration of 2 mg/ml was added, and
the mixture was incubated at 50°C overnight. The plugs were washed
twice in 20 ml of 10 mM Tris-10 mM EDTA and once in 10 mM Tris-1 mM
EDTA, each time for 2 h by gentle swirling at room temperature.
Plugs (100 µl) were digested with 4 µl of SmaI (Roche)
(10 U/µl), 30 µl of 10× reaction buffer, and 166 µl of
H2O at 25°C overnight. They were loaded into the wells of
a 1% agarose gel (100 ml). Pulsed-field gel electrophoresis (PFGE) was
performed with the CHEF DR-II apparatus (Bio-Rad) at the following
parameters: voltage, 6 V/cm; switching time, 1 s initial and
20 s final; running time, 18 h; and running temperature, 14°C. The running buffer was 0.5× Tris-borate EDTA TBE (2 liters).
Preparation and analysis of protein.
Cells were grown in
M17GStd (10 ml) until the stationary phase and then were
diluted down to give a final OD600 of 1.0. They were
chilled in ice-water and harvested by centrifugation. They were
resuspended in 20 mM Na2HPO4 (1.5 ml) and then
dispensed into a small test tube (12 by 75 mm) containing 2 g of
sterile glass beads (150 to 212 µm in diameter) (Sigma). It was
vortexed at the highest setting for 30 s and then chilled in
ice-water for 1 min until the total vortexing time was 6 min. The glass beads were allowed to settle to the bottom, and the supernatant was
transferred to a microcentrifuge tube, which was centrifuged at 12,000 rpm for 15 min at 4°C. The supernatant was transferred to a new tube
and stored at
20°C until analysis. The protein isolated was
electrophoresed with SDS-polyacrylamide gel electrophoresis (PAGE) gel
(4 to 15% Tris-HCl) (Bio-Rad) at 125 V for 75 min. The gel was stained
with Coomassie brilliant blue (G-250) (21).
Growth response studies.
The isolates and the parent were
inoculated into M17GStd, M17GLim, and M17(no
glucose) medium (100 ml) at an initial OD600 of 0.02, and
samples were collected hourly for OD600 determination. The
relative percent maximum OD (ODmax) was calculated by
dividing the ODmax of each isolate by the ODmax
of the parent for each medium. Each experiment was done in triplicate,
and representative and mean results are shown. For growth responses on
different sugars, samples were streaked for single colonies on M17
containing 0.5% lactose, maltose, or ribose. Bromcresol purple
(0.004%) was also added as a pH indicator.
Assessment of stress response.
The following stresses were
used: acid stress, M17GStd at pH 2.8 (adjusted with
hydrochloric acid); bile salt stress, M17GStd containing
0.1% bile salt (sodium cholate and sodium deoxycholate [1:1])
(Sigma); heat stress, M17GStd at 49°C; and hydrogen
peroxide stress, M17GStd containing 3 mM
H2O2. The isolates, as well as the parent, were
grown to mid-log phase, and a time zero sample was collected. The cells
were immediately harvested, resuspended in M17GStd
containing each of the stresses, and incubated at 30°C for 1 h.
In the case of heat stress, the cells were incubated at 49°C instead
of 30°C. A 1-h sample was collected from each culture. The number CFU
of each sample was determined, and the percentage of survival was
determined by dividing CFU at 1 h by CFU at time zero. Each
experiment was done in triplicate, and mean results are shown.
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RESULTS |
Growth kinetics in standard and glucose-limiting media.
The
growth of L. lactis LL41-1 in standard (M17GStd)
and glucose-limiting (M17GLim) media was analyzed (Fig.
1). The aim was to examine the effect of
altering the level of glucose on the nature of the transition phase.
The M17GStd medium supported rapid growth to a maximum
OD600 of 3.4. In contrast, the M17GLim medium supported slow growth to a maximum OD600 of only 0.62. In
the M17GStd medium, the transition phase between the log
and stationary phases was sudden and short, whereas in the
M17GLim medium, it was gradual and protracted.
Survival of cells during long-term starvation.
The survival of
cells that were grown and maintained under different conditions was
investigated. In the first case, the cells were grown in
M17GStd and were kept in the resultant spent medium. In the
second case, the cells were grown in M17GStd, and once the
stationary phase was reached, they were harvested and transferred into
fresh M17 (no glucose). Finally, in the third case, the cells were
grown in M17GLim and were kept in the resultant spent
medium. The number of viable cells (in terms of CFU) was determined for up to 350 days. For each case, the experiment was performed in triplicate.
In the first case, the number of viable cells decreased in the first 4 days in all three of the triplicate cultures (Fig. 2a). Following that point, the number of
viable cells fluctuated considerably and was variable in the three
cultures. There were no viable cells at 33 days in one culture, 50 days
in another (Fig. 2a), and 110 days in the third (Fig.
3). The pH of each culture at those times
was 5.1. To test the effect, if any, of this pH on cell survival, the
freshly prepared cells from another M17GStd culture were
transferred into fresh M17 (no glucose) adjusted to pH 5.1 (with
hydrochloric acid), and the number of viable cells was determined. The
number of viable cells of this culture remained relatively high for the
350 days it was monitored (data not shown).

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FIG. 2.
Survival of cells during starvation for 50 days. The
cells were first cultured to the stationary phase in
M17GStd and were kept in the resultant spent medium (a),
first cultured to stationary phase in M17GStd and then
transferred into M17(no glucose) (b), or first cultured to stationary
phase in M17GLim and kept in the resultant spent medium
(c). Each experiment was done in triplicate, and the results of each of
the triplicate experiments are shown.
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FIG. 3.
Survival of cells during starvation for 350 days. One of
each type of culture (Fig. 2) was maintained for 350 days.
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In the second case [M17GStd culture transferred to M17 (no
glucose)], the number of viable cells decreased gradually in all three
triplicate cultures, and at 50 days, the numbers of CFU were still
relatively high (Fig. 2b). The pH at 50 days was 6.8. One of the
cultures was maintained further, and at 350 days, the number of viable
cells was 2.2 × 105 CFU/ml (Fig. 3). In the third
case, the number of viable cells decreased over time, although slight
fluctuations were evident in all three triplicate cultures (Fig. 2c).
The overall decrease was small, and at 50 days, the number of viable
cells was still relatively high. The pH at 50 days was 6.5. One of the
cultures was maintained further, and at 350 days, the number of viable cells was 2.0 × 105 CFU/ml.
Starvation-associated changes to colony morphology and cell
size.
The M17GLim culture at 1 year was plated out
onto M17GStd plates for single colonies, and after 4 days
of incubation, three distinctive colony morphotypes were evident (Fig.
4). The most numerous type was the tiny
colony type (TCT), followed by the large colony type (LCT), and then
the opaque colony type (OCT). The OCT was slightly bigger than the
average-size TCT and a shade lighter. The TCT/LCT/OCT ratio was
approximately 60:10:1. Freshly grown parent cells formed large and
uniform-size colonies. The size of LCT resembled that of the parent
colonies. When the same plates were incubated for a further 7 days, all
colony morphotypes remained unchanged. Two of each type were randomly
chosen and streaked out for single colonies four times on the same
medium. Following the subculturings, the colony morphotypes, in
general, were still intact; however, both TCT isolates and OCT isolates became slightly larger than when they were first plated. Nevertheless, they were still smaller than the LCT. The six isolates were stocked in
glycerol and stored at
20°C. After the storage, the colony morphotypes remained unchanged.

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FIG. 4.
Different colony morphotypes of cells from the
1-year-old M17GLim culture. The culture was spread plated
on M17GStd solid medium and incubated for 4 days.
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The isolates were examined under a phase-contrast microscope at a ×100
magnification (Fig. 5). Freshly prepared
parent cells were also examined. All isolate cells were significantly
smaller than the parent cells, despite the fact that they were
"enriched" in M17GStd prior to the microscopic
examination. Among the three colony morphotypes, the LCT was slightly
bigger than the OCT, and the TCT was noticeably the smallest.

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FIG. 5.
Cell morphology of each colony type isolated from the
1-year-old M17GLim culture (magnification, ×100). Freshly
prepared parent cells (a) were compared to the three colony types, the
LCT (b), the TCT (c), and the OCT (d).
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The same M17GLim culture was further maintained, and at 2 years, it was plated out onto M17GStd plates. After 4 days
of incubation, tiny colonies appeared at frequency of 2.3 × 103 CFU/ml. All colonies were similar in size and
appearance. Four colonies were randomly chosen, and they were streaked
out for single colonies five times on the same medium. With each
subculturing, the four isolates required 4 days to form the tiny
colonies. These isolates were much smaller than the TCT isolates from
the 1-year-old culture. The isolates were stocked in glycerol and
stored at
20°C.
Effect of starvation on the plasmid DNA.
Plasmid DNA isolation
was performed on all isolates (i.e., two isolates of each colony
morphotype from the 1-year-old M17GLim culture [Fig.
6a] and the four isolates from the
2-year-old M17GLim culture [Fig. 6b]). Plasmid DNA was
also isolated from freshly prepared parent cells. The parent cells
contained four plasmids, and their sizes were 158, 54, 41, and 38 kb.
The two LCT isolates possessed the 41- and 38-kb plasmids and had lost
the other two larger plasmids. Likewise, one of the TCT isolates
possessed the 41- and 38-kb plasmids and had lost the other two larger
plasmids. However, the other TCT isolate lacked all four original
plasmids, but possessed a 12-kb plasmid that did not correspond in size to any of the original plasmids. The two OCT isolates possessed only
the 41- and 38-kb plasmids. All four 2-year-old isolates had lost all
four original plasmids and possessed only the 12-kb plasmid. The
plasmids in each isolate were all stably maintained following several
subculturings in M17GStd and also following stocking and
storage at
20°C.

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FIG. 6.
Plasmid profile of freshly prepared parent cells and the
1- and 2-year-old isolates. (a) Parent cells (lane 1), 1-year-old LCT
isolates (lanes 2 and 3), 1-year-old TCT isolates (lanes 4 and 5),
1-year-old OCT isolates (lanes 6 and 7), and a plasmid standard ladder
(lane 8) are shown. (b) -HindIII standard (lane 1),
parent cells (lane 2), 2-year-old isolates (lanes 3 to 6), and a
plasmid standard ladder (lane 7) are shown. The chromosomal band
present in all DNA preparations is labeled "chr."
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Southern hybridization analysis of the 12-kb plasmid.
The
12-kb plasmid from a 2-year-old isolate was used as a probe against the
plasmid DNA of the 1-year-old isolates (Fig.
7). The plasmid DNA of the parent strain
was used as a control. Positive signals were obtained for the 41- and
38-kb plasmids wherever present. Hybridization to the 12-kb plasmid was
observed in the TCT isolate (lane 5), and it also appeared to hybridize
to the chromosome in that isolate. Hybridization to the 2-year-old
isolates was similar to that observed in the TCT isolate in lane 5 (data not shown).

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FIG. 7.
Southern hybridization with the 12-kb-plasmid probe
against the plasmid DNA of freshly prepared parent cells and the
1-year-old isolates. Parent cells (lane 1), the 1-year-old LCT isolates
(lanes 2 and 3), the 1-year-old TCT isolates (lanes 4 and 5), and the
1-year-old OCT isolates (lanes 6 and 7) are shown. The chromosomal band
present in all DNA preparations is marked with "chr."
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PFGE of chromosomal DNA.
Chromosomal DNA of the 1-year-old
(Fig. 8a) and the 2-year-old (Fig. 8b)
isolates was digested with SmaI and was subjected to PFGE.
Most of the fragments in the isolates matched the size of those in the
parent. However, there were a few exceptions. The 82-kb fragment
present in the parent was missing in the 1-year-old TCT isolate and in
two of the 2-year-old isolates. A 550-kb fragment absent in the parent
was present in one of the TCT isolates and in three of the 2-year-old
isolates. A 95-kb fragment present in the parent was absent in all of
the 2-year-old isolates.

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FIG. 8.
PFGE of DNA fragments from freshly prepared parent cells
and the 1- and 2-year-old isolates. The chromosomal DNA from each was
isolated, digested with SmaI, and subjected to PFGE. (a)
Parent cells (lane 1), the 1-year-old LCT isolate (lane 2), the
1-year-old TCT isolate (lane 3), and the 1-year-old OCT isolate (lane
4) are shown. (b) Parent cells (lane 1) and 2-year-old isolates (lanes
2 to 5) are shown.
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Protein analysis.
Total protein was prepared from the isolates
and was compared to that of the parent. A similar number of cells of
each strain were used in the protein preparation. The protein profile
of the isolates was similar to that of the parent; however, the overall level of protein expressed appeared to be lower in all of the isolates
than in the parent, the 2-year-old isolate being the lowest (Fig.
9). A few of the proteins present in the
parent appeared to be missing in the isolates: i.e., the 44-kDa protein
was missing in all the isolates, the 46-kDa protein was missing only in
the 2-year-old isolate, and the 48-kDa protein was present only in the
2-year-old isolate. A number of proteins not present in the parent
appeared in the isolates: i.e., the 96-kDa protein of TCT, the 62- and
42-kDa proteins of OCT, and the 72-kDa of the 2-year-old isolate.

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FIG. 9.
Total protein isolated from freshly prepared parent
cells and the 1- and 2-year-old isolates. Parent cells (lane 2), the
1-year-old LCT isolate (lane 3), the 1-year-old TCT isolate (lane 4),
the 1-year-old OCT isolate (lane 5), and the 2-year-old isolate (lane
6) are shown. A protein standard is shown in lane 1.
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Growth response under different energy levels.
The growth of
the isolates under different energy (glucose) levels was investigated
and was compared to that of the parent (Fig. 10a, b, and
c). At 0.5% glucose
(M17GStd), the parent grew faster and to a higher
ODmax than the isolates. Despite the abundance of
nutrients, including glucose in the medium, the isolates were unable to
grow as well as the parent, and all reached the stationary phase by
10 h. Another measurement was taken at 48 h, and the OD
reading remained unchanged from that at 24 h. At 0.025% glucose (M17GLim), the growth of all strains was reduced, and at
0% glucose, it was reduced even further. However, the growth of each
isolate relative to that of the parent was higher for both
M17GLim and M17(no glucose) compared to M17GStd
(Fig. 10d). One exception was the LCT in the M17(no glucose) medium. In
a separate study, the isolates and the parent were tested for growth
response on M17 containing lactose, maltose, or ribose as the sole
energy source. The parent can grow by using all three. However, none of
the isolates could grow by using any of the energy sources.

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FIG. 10.
Growth of parent cells and the 1- and 2-year-old
isolates under different energy (glucose) levels. Panels a through c
show results with 0.5% glucose (a), 0.025% glucose (b), and no
glucose (c). (d) ODmax of each isolate relative to that of
the parent at each glucose level.
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Stress response.
The stress response of the isolates was
examined to see whether it had been altered by starvation. The cells
were grown to mid-log phase and were directly exposed to each of the
four severe stresses. The survival was compared to that of the parent
(Fig. 11). Against both the bile salt
stress and the hydrogen peroxide stress, all of the isolates exhibited
superior survival compared to the parent. However, against the acid
stress and the heat stress, all of the isolates, except the TCT,
exhibited inferior survival compared to the parent. The extent of
increase or decrease in survival, compared to that of the parent,
varied depending on the stress applied. The TCT displayed the highest
overall resistance against the four stresses. The 2-year-old isolate
showed relatively high resistance against the bile salt stress and the
hydrogen peroxide stress, whereas against the acid stress and the heat stress, it showed relatively low resistance.

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FIG. 11.
Response of each isolate and the parent to the bile
salt, hydrogen peroxide, acid, and heat stresses. 2-yo., 2-year-old
isolate.
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DISCUSSION |
The medium in which the cells were kept had a significant effect
on the survival of cells during long-term starvation, as was shown in
the comparison between the M17(no glucose) medium and the
M17GStd spent medium. In the M17(no glucose) medium, the number of viable cells decreased gradually and was still relatively high at 350 days, whereas in the M17GStd spent medium,
there were no viable cells by 110 days. Unlike the cells that were kept
in the M17GStd spent medium, the cells that were
transferred into the M17(no glucose) medium would not have been exposed
to the harmful end products. The cells that were kept in the
M17GLim spent medium exhibited a pattern of survival
similar to that of the M17(no glucose) medium. The level of end
products in the M17GLim spent medium would be expected to
be low, because of the low level of growth supported by this medium.
The level of end products is also indicated by the measurement of pH.
The pH was 6.8 for the M17(no glucose) medium, pH 6.5 for the
M17GLim spent medium, and only 5.1 for the
M17GStd spent medium. The pH of 5.1 itself, however, was
shown not to be the cause of the rapid viability decline observed in
the M17GStd spent medium. Furthermore, cells at stationary
phase would be expected to be inherently resistant to such a pH level
(7, 12, 16).
L. lactis is homofermentative, and under the usual
conditions, including the one used in this study, glucose is converted to the single end product lactic acid via the Embden-Meyerhof glycolytic pathway (27). Therefore, lactic acid in the
spent medium would likely have been a key factor effecting survival of
cells during long-term starvation. Other end products resulting from
metabolism of other substrates in the medium are in low concentrations in the spent medium and therefore would be unlikely to assert a strong
influence on the cell survival. Furthermore, lactic acid has been
identified in spent medium as the end product that effects growth, and
at 6%, it stops growth altogether (2).
The nature of the transition phase between the log and stationary
phases has been proposed to have an effect on the survival of cells
during long-term starvation (15). It is understood that a
gradual and protracted transition phase allows cells to respond to the
nutrient-limiting situation, preparing themselves for imminent
starvation. The transition phase in the M17GStd cultures was relatively sudden and short, whereas in the M17GLim
cultures, it was relatively gradual and protracted. However, despite
the sudden and short transition phase of the M17GStd
cultures, once the cells were transferred into fresh M17(no glucose),
they were able to survive as well as those that underwent a gradual and protracted transition phase, as was the case with the
M17GLim cultures. It therefore appears that with L. lactis cultures, the nature of the transition phase is not
significant in effecting survival of cells during long-term starvation.
Apart from the detrimental effect of spent medium on survival of cells
during long-term starvation, the spent medium may have provided
selection pressure for growth of mutant populations. This may explain
why there were large fluctuations in the M17GStd cultures,
small fluctuations in the M17GLim cultures, and virtually no fluctuations in the transferred cultures. For mutant cells to grow
under such an unfavorable condition, they must possess an ability to
withstand the lactic acid present in the spent medium and also possess
an ability to utilize an energy source other than the depleted glucose.
It appears that the mutant populations arose randomly, because each
M17GStd culture with an identical initial condition
produced vastly different fluctuations. It is known that during
starvation there is an inherent decrease in replication fidelity and
repair activity, such as the DNA mismatch repair system
(19). If such a system is compromised, then there would be
an increase in the mutation frequency, leading to a greater genetic
variability. There is growing evidence that bacterial cells during
long-term starvation undergo continuous mutational changes resulting in
heterogeneous populations (5, 8). A bacterial culture
during long-term starvation cannot be seen as static or stationary, but
as dynamic in terms of cell number and cell type.
Generation of new alleles or alteration of gene expression would be
potentially advantageous during starvation, during which an intense
competition for energy exists. Possession of appropriate new alleles or
variation of gene expression may allow cells to utilize energy sources
that could not be utilized before and/or utilize any existing energy
source much more efficiently. The M17G medium exhausted for glucose
would still contain small amounts of nutrients, such as polypeptides
and oligopeptides, and they may provide an alternative source of energy
for those cells that could use them. L. lactis cannot
accumulate carbonaceous storage compounds, such as glycogen, and
therefore the energy has to come from outside of the cell (i.e., spent
medium). An energy source may come from the breakup of many dead cells
in spent media (4, 20).
When the freshly prepared isolates were grown under energy-limiting and
energy-nonlimiting conditions and compared to the growth of the parent
under the same conditions, the isolates were able to grow to a higher
OD relative to the parent in the energy-limiting conditions than in the
energy-nonlimiting condition. The growth of the isolates was less
affected by the apparent lack of energy in the medium compared to that
of the parent. It can be said that the isolates displayed a growth
advantage under the energy-limiting condition. Moreover, unlike the
parent, the isolates appeared not to be totally dependent on the level
of energy present in the medium, because despite the abundant energy
remaining in the M17GStd medium, the isolates were not able
to grow to the same cell densities as the parent.
A strategy bacterial cells use to conserve energy during starvation is
the reduction of cell size. The reduced form has been observed for
several bacterial species (14), and the longer the
starvation period, the smaller the cells become, until they reach a
minimum size (18). In this study, the isolates had become significantly smaller than the freshly grown parent cells. Reduction in
the plasmid number could be another strategy used by L. lactis to conserve energy during starvation. It would be much more
energy conservative to maintain fewer plasmids. The parent cells
normally possess four plasmids; however, the 1-year-old isolates
possessed a maximum of two plasmids, and all of the 2-year-old isolates possessed only one plasmid. The two biggest plasmids were missing in
all of the isolates examined. Plasmid stability during starvation has
also been reported with other bacterial species. It has been shown that
in E. coli (3), Aeromonas
salmonicida (17), and Klebsiella spp.
(28), the number of plasmids possessed by the cells also
decreased during starvation; however, in some cases, all plasmids were
stably maintained for extremely long periods of starvation. Introduced
plasmids were readily lost, as expected, once the selection pressure
was removed.
What was interesting was the fact that 12-kb plasmid, possessed by all
of the 2-year-old isolates and by the 1-year-old TCT isolate, did not
correspond in size to any of the original plasmids. Not only the number
of plasmids was reduced with starvation, but also a "new" plasmid
was generated. Hybridization analyses indicate that the plasmid may
have originated from a recombination of the 41- and 38-kb plasmids. A
positive hybridization signal was also evident with the chromosomal DNA
of the 12-kb plasmid-carrying TCT isolate, indicating that those two
plasmids or components of the two plasmids may have integrated into the
chromosome. Positive hybridization signals were not evident with the
158- and 54-kb plasmids, and perhaps these two plasmids were not part
of the survival strategy. This is further supported by the fact that these two plasmids were lost earlier than the 41- and 38-kb plasmids.
The new plasmid may contain indispensable traits that are necessary for
survival during long-term starvation. It is not known whether whole
genes or segments of genes from the original plasmids were used in
generating the new plasmid. It is possible that segments of genes were
shuffled to create "new" genes or to alter expression of existing
genes. All four randomly chosen isolates from the 2-year-old culture
possessed the 12-kb plasmid. Because the same-size plasmid was present
in all of the 2-year-old isolates examined, the DNA rearrangement and
the resultant plasmid observed could be a result of the same inherent
program operating in those cells. Apart from the changes to the plasmid
DNA, it was shown that the chromosomal DNA was also altered in the
isolates. Likewise, it has been shown that the chromosomal DNA of
E. coli changed when subjected to long-term starvation
(5). The changes that had taken place in the isolates were
also evident in the gene expressed and in the inability to utilize
lactose, maltose, or ribose. Another change, which could be important
in the survival during starvation, was the increased resistance against
the bile salt and hydrogen peroxide stresses. However, the isolates
displayed variable response against the acid and heat stresses.
Significant cellular changes invariably occur when cells enter the
stationary phase, which is caused primarily by starvation. The change
process appears fixed in some bacterial species and variable in others.
In differentiating bacteria, the differentiation process is under the
control of an inherent program and therefore follows a single path
resulting in the same end form (i.e., in sporulation, cells are
transformed into spores). In nondifferentiating bacteria, the process
of change during starvation appears to vary from cell to cell, as
observed in the M17GLim culture, where the same cells at
the beginning of starvation proceeded to different end forms. Some were
transformed into TCT cells, whereas others were transformed into OCT
cells, and some possessed two plasmids, whereas others possessed a new
plasmid. It appears that for nondifferentiating bacteria, the
starvation-induced changes are not restricted to a single path as is
the case with differentiating bacteria. Perhaps, the starvation change
process in nondifferentiating bacteria is not solely determined by the
starvation alone, but can be influenced by other factors (i.e.,
environmental stimuli or other factors undefined). If this is the case,
would it be possible to effect the starvation change process by
exposing the starving culture to an external element? Perhaps a
different condition could be introduced at the beginning of starvation
to coerce the cells into a certain starvation change process. The
different conditions introduced could result in cells developing vastly
different phenotypes. Greater understanding of how starving cells
undergo change may facilitate new strategies for development of cell
lines with advantageous traits. It may also lead to manipulation of the
control of genes specific to the starvation situation.
 |
ACKNOWLEDGMENT |
This work was supported by the Cooperative Research Centre for
Food Industry Innovation of Australia.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Biotechnology, University of New South Wales, Sydney, NSW 2052, Australia. Phone: 61 2 9385 1299. Fax: 61 2 9385 1015. E-mail:
w.kim{at}unsw.edu.au.
 |
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0099-2240/01/$04.00+0 DOI: 10.1128/AEM.67.10.4594-4602.2001
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