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Applied and Environmental Microbiology, October 2001, p. 4648-4656, Vol. 67, No. 10
Department of Microbiology and Cell
Science, Institute of Food and Agricultural Sciences, University of
Florida, Gainesville, Florida 32611-0700,1 and
National Stable Isotope Resource, Bioscience Division, Los
Alamos National Laboratory, Los Alamos, New Mexico
875452
Received 26 September 2000/Accepted 17 July 2001
Extracellular Penicillium fellutanum
exo-
0099-2240/01/$04.00+0 DOI: 10.1128/AEM.67.10.4648-4656.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Relationship of Exo-
-D-Galactofuranosidase Kinetic
Parameters to the Number of Phosphodiesters in Penicillium
fellutanum Peptidophosphogalactomannan: Enzyme Purification
and Kinetics of Glycopeptide and Galactofuran Chain
Hydrolysis

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ABSTRACT
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
-D-galactofuranosidase, with a mass of 70 kDa, was
purified to apparent homogeneity. The enzyme was used to investigate
the influence of phosphodiesters of the peptidophosphogalactomannans
pP2GMii and pP25GMii
(containing 2 and 25 phosphodiester residues, respectively, per mol of polymer) on the kinetic parameters of galactofuranosyl hydrolysis of these two polymers, of
1-O-methyl-
-D-galactofuranoside, and of two
galactofuranooligosaccharides. The enzyme did not hydrolyze phosphorylated galactose residues of pP2GMii or
pP25GMii. The
kcat/Km value for
pP25GMii is 1.7 × 103
M
1 s
1, that for
1-O-methyl-
-D-galactofuranoside is 1.1 × 104 M
1 s
1, that for
pP2GMii is 1.7 × 10 4 M
1 s
1, and those for
5-O-
-D-galactofuranooligosaccharides with
degrees of polymerization of 3.4 and 5.5 are 1.7 × 105 and 4.1 × 105 M
1
s
1, respectively. Variability in the
kcat/Km values is due
primarily to differences in Km values; the
k
1/k1 ratio
likely provides the most influence on Km.
kcat increases as the degree of polymerization of galactofuranosyl residues increases. Most of the galactofuranosyl and phosphocholine residues were removed by day 8 in vivo from pPxGMii added to day 3 cultures initiated in
medium containing 2 mM phosphate but not from those initially
containing 20 mM phosphate. The filtrates from day 9 cultures initiated
in 2 mM inorganic phosphate in modified Raulin-Thom medium
contained 0.2 mM inorganic phosphate and 2.2 U of galactofuranosidase
ml
1h
1. No galactofuranosidase activity but
15 mM inorganic phosphate was found in filtrates from day 9 cultures
initiated in 20 mM phosphate. In vivo the rate of galactofuranosyl
hydrolysis of pPxGMii and of related polymers
is proportional to the
kcat/Km value of each
polymer. The kinetic data show that the
kcat/Km value increases
as the number of phosphodiesters of pPxGMii
decreases, also resulting in an increase in the activity of
exo-
-D-galactofuranosidase.
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INTRODUCTION
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
-D-Galactofuranosyl
residues occur in several genera and species of fungi (5-7, 10,
12, 18, 20, 22-24, 27, 34). Complex cell walls (9)
of Penicillium fellutanum (formerly P. charlesii)
and extracellular phosphorylated glycopeptides
(peptidophosphogalactomannan pPxGM, with
x phosphodiester residues per mol of polymer) have
been isolated and partially characterized (8, 14, 16, 34,
40-42). pPxGM fractionates into four
related species, pPxGMi,
pPxGMii,
pPxGMiii, and
pPxGMiv, based on the affinity
toward DEAE-cellulose · borate (36). pPxGMii (Fig.
1) is the major species and constitutes
80% or more of the total pPxGMs.

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FIG. 1.
Structural features of peptidophosphogalactomannan.
These features are based on methylation analyses and 13C
and 31P NMR spectroscopy (9, 16, 40, 41). The
diagram shows one phosphogalactomannan repeating unit attached to a
3-kDa peptide unit. The 5-O-
-galactofuranosyl-containing
chain is attached to a mannotetraosyl residue through the C-3
position of a mannopyranosyl residue. Phosphocholine phosphodiester is
the major phosphodiester. It is attached to C-6 of a mannopyranosyl
residue.
Phospho-1'-O-[N-peptidyl-(2'-aminoethanol)]
residues are associated primarily, if not exclusively, with the
galactofuran chains. (Reprinted from reference 32 with permission from
the publisher.)
Two types of phosphodiesters occur in extracellular pPxGM. D-Mannopyranosyl-6-O-phosphocholine is a major phosphodiester species (40, 41) that occurs as part of the mannan. D-Galactofuranosyl-6-O-phospho-1'-O-[N-peptidyl-(2'-aminoethanol)] is the second type of phosphodiester found (8, 9). Removal of phosphocholine phosphodiester residues from pPxGMii converts it into pPxGMiii (32), a species that binds tightly to DEAE-cellulose · borate (36). Based on 31P nuclear magnetic resonance (NMR) spectroscopy (36), phosphocholine phosphodiester represents 90% or more of the phosphodiesters in pPxGMi. pPxGMi is a minor species of pPxGM.
The physiological roles of pPxGMii
as a reserve source of carbon-, nitrogen-, and phosphate-containing
precursors required during the process of osmotic protection or sulfate
storage have been reported (29-32). During our
investigations, indirect evidence was obtained which suggested that a
nonspecific R-O-phosphocholine phosphodiester:phosphocholine hydrolase (15, 37) and
exo-
-D-galactofuranosidase (29) produced by
P. fellutanum may work in concert during the depolymerization of pPxGMs. An understanding of
the mechanism of depolymerization of
pPxGMii species and related
extracellular species and how this depolymerization is regulated may
provide insight into the physiology of cell wall and membrane turnover,
stress management, cell growth, and other cellular processes.
Enzyme-catalyzed depolymerization of cell walls and extracellular
polymers and reutilization of their products as nutrients seem to be
critical for the survival of P. fellutanum under various
environmental conditions and conditions of exogenous nutrient depletion
(9, 29-32).
Early work showed that increasing the pH of culture filtrates of
modified Raulin-Thom medium from 2 to 4 with
(NH4)2HPO4, (NH4)2CO3,
Na2CO3, or NaOH resulted in the appearance of
exo-
-D-galactofuranosidase activity in day 8 cultures
(33) and that pPxGMii
contained approximately 10 phosphodiesters. In contrast, P. fellutanum cultured for 4 to 5 days in a medium enriched with
trace elements and containing citrate as the secondary source of
carbon (36) produced
pPxGMii that contained up to
60 phosphodiesters (8, 9); no
exo-
-D-galactofuranosidase was detected in the medium.
Reduction of the initial phosphate concentration in the medium from 20 to 2 mM resulted in a 35-fold increase in the activity of
R-O-phosphocholine phosphodiester:phosphocholine hydrolase with p-nitrophenyl-phosphocholine as a substrate
(37). The phosphodiester content of
pPxGMii species obtained from day 10 cultures which initially contained 20 or 2 mM phosphate was 20 or 1 residues, respectively (36). It was also observed
(39) that exo-
-D-galactofuranosidase
obtained from Raulin-Thom medium did not bind to an affinity support
obtained by reacting pP30GMii isolated from a
medium containing citrate with cyanogen bromide-activated Sepharose 4B
(35). These data lead us to question whether
phosphodiesters of pPxGMii influence
the exo-
-D-galactofuranosidase-catalyzed
depolymerization of galactofuranosyl-containing galactan chains.
Here we report (i) a procedure for the purification of
exo-
-D-galactofuranosidase, different from that reported
previously (26); (ii) the influence of phosphodiester
residues of extracellular pPxGMii on
the kinetic properties of the purified enzyme, and (iii) the influence
of phosphate concentration in the medium on the presence of
-D-galactofuranosyl and phosphocholine phosphodiester
residues in pPxGMii in day 8 and day
9 cultures.
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MATERIALS AND METHODS |
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Chemical and reagents. All chemicals used, including L-[methyl-13C]methionine and 2H2O, were reagent grade and were purchased from Sigma Chemical Co., St. Louis, Mo., or Fisher Scientific Co., Pittsburgh, Pa. Commercial enzyme preparations were obtained from Sigma or Worthington Biochemical Co. Sodium (trimethylsilane)-1-propanesulfonate was obtained from Wilmad Glass Co., Buena, N.J.
Culture conditions and growth media. P. fellutanum (formerly P. charlesii G. Smith; NRRL 1887) conidiospores were obtained from day 14 cultures. The conditions and procedures for obtaining the conidiospores are described elsewhere (1, 9, 35).
Analytical methods. (i)Determination of carbohydrate and phosphate. Total carbohydrate was determined by a modified (1) phenol-sulfuric acid method (13) using 0.3 ml of sample, 20 µl of 80% phenol, and 1.0 ml of concentrated sulfuric acid. After the reaction, the A490 was compared with that of a solution of 0.9 mM galactose-0.3 mM mannose. Reducing sugars were determined by the Nelson procedure (28).
After a sample was reduced to ash (2), the quantity of phosphate remaining was determined at 820 nm (3). The reference was 0.4 µmol of KH2PO4. Inorganic phosphate was determined at 830 nm as the reduced phosphomolybdate complex (38) in filtrates of P. fellutanum cultured in Raulin-Thom medium modified to contain either 2 or 20 mM ammonium phosphate.(ii) Determination of protein. Protein was determined by the microbicinchoninic acid (micro-BCA) method of Pierce Biochemicals. Bovine serum albumin (10 to 200 µg/ml) served as the reference.
(iii) Determination of formaldehyde. Oligosaccharides or pPxGMii (4 to 7 µmol of carbohydrate) in H2O were reacted with a fivefold molar excess of sodium metaperiodate for 18 h at 4°C in the dark (35). Excess periodate was destroyed with sodium arsenite. Formaldehyde generated by the oxidation was reacted with MacFadyn chromotropic acid reagent (25). The A570 was compared with that of the formaldehyde generated from 0.65 µmol of erythritol.
Enzyme assays. (i) Exo-
-D-galactofuranosidase
activity.
Exo-
-D-galactofuranosidase activity was
determined by the procedure of Rietschel-Berst et al. (35)
using 1-O-methyl-
-D-galactofuranoside as a
substrate. The galactose released during incubation at pH 4.0 and
40°C was determined as either micromoles of reducing sugar (28) or micromoles of galactose reacted in a coupled
oxidation of galactose and o-cresol catalyzed by galactose
oxidase and peroxidase, respectively, as described by Worthington
Biochemical Co. One unit of exo-
-D-galactofuranosidase
activity releases 1.0 µmol of galactose min
1
ml
1 at pH 4.0 and 40°C. Routine estimation of
exo-
-D-galactofuranosidase activity was determined by
monitoring the change in the optical rotation of the reaction mixture
in either a decimeter JASCO DIP digital polarimeter or a Rudolph
digital polarimeter with a 7-ml cell. An increase of +35 millidegrees
in these 1-dm cells represents the hydrolysis of 1.0 µmol of
substrate ml
1 and the accumulation of 1.0 µmol of
D-galactose ml
1 using specific optical
rotations in water of
1-O-methyl-
-D-galactofuranoside and
D-galactose of
110 and +83.5 degrees, respectively. A
concentration of 5 mM (observed change of
107 millidegrees)
1-O-methyl-
-D-galactofuranoside was used
routinely, except in one experiment, in which 20 mg (61 µmol of
galactofuranosyl residues) of
pPxGMii was used as a substrate to
measure enzyme activities in culture filtrates of day 9 modified
Raulin-Thom medium that contained 0.2 or 15 mM inorganic phosphate.
(ii) Activities of glycohydrolases and phosphomono- and
phosphodiesterases.
Synthetic p-nitrophenyl derivatives
of carbohydrates and phosphomono- and phosphodiesters served as
substrates in some experiments in which activities of glycohydrolase
and acid phosphoesterases were measured. The p-nitrophenol
formed over 2 h at pH 4.0 and 40°C was quantified as
p-nitrophenolate (E410, = 18.3 mM
1 cm
1) after the addition of an equal
volume of 0.2 N NaOH.
Preparation of
1-O-methyl-
-D-galactofuranoside,
pPxGMii species, and
5-O-
-D-galactofuranooligosaccharides.
1-O-Methyl-
-D-galactofuranoside was prepared
by the procedure of Augstead and Berner (4) and
fractionated on powdered cellulose as described previously
(35). Substrate preparations had specific optical
rotations of
105° to
108°.
-D-galactofuranooligosaccharide-containing fractions had degree of polymerizations (DP) of 3.4 and 5.5. The DP was
determined from the ratio of total carbohydrate to formaldehyde.
Enzyme purification. On day 17, solid phenylmethylsulfonyl fluoride (17 µg/ml) was added to cultures on Raulin-Thom medium (10, 35). The cultures were harvested on day 18 and filtered through Whatman no. 4 filter paper. Filtrates were dialyzed in Spectrapor membrane tubing with an MWCO of 14,000 against 50 mM sodium citrate (pH 5.0) at 4°C. The dialysates were concentrated approximately 10-fold in YM-30 membrane (MWCO, 30,000). Enzyme preparations and buffers were filter sterilized. The crude enzyme preparations were fractionated on a DE-52 column preequilibrated with 50 mM sodium citrate (pH 5.0).
Fractions 10 to 27 containing exo-
-D-galactofuranosidase
activity had little or no pPxGMs. These
fractions were combined, concentrated, and applied to DE-52
preequilibrated with 50 mM morpholinepropanesulfonic acid (MOPS)
(pH 7.5). The gel was irrigated with a stepwise gradient of MOPS
(fractions 1 to 20), MOPS-0.12 M NaCl (fractions 21 to 30), and
MOPS-0.25 M NaCl. Fractions 31 to 40, which contained
exo-
-D-galactofuranosidase activity, were combined,
dialyzed against 12.5 mM sodium tartrate buffer (pH 3.0), and
fractionated on CM-Sepharose preequilibrated with 12.5 mM sodium
tartrate (pH 3.0). The gel was irrigated with the same buffer
containing 0.12 M NaCl (fractions 21 to 45) and the same buffer
containing 0.25 M NaCl (fractions 46 to 80). Fractions 55 to 70, which
contained enzyme activity, were pooled and concentrated. Samples (200 µl) which contained 20 to 200 µg of protein in 10 mM sodium
acetate-10 mM NaCl (pH 4.0) were filtered through a 0.22-µm-pore-size filter and fractionated twice on a Superose-12 fast
protein liquid chromatography (FPLC) gel column of (Pharmacia; void
volume, 7.5 ml).
SDS-PAGE. Polyacrylamide gel electrophoresis (PAGE) of galactofuranosidase was performed on a mini-slab gel apparatus at 200 V (constant) using the Laemmli buffer system (21). Gels were cast on glass plates (7 by 10 cm). Separating and stacking gels contained 12 and 4% acrylamide, respectively. Samples in sodium dodecyl sulfate (SDS) reducing buffer (pH 6.8; 50 mM Tris-HCl in 10% glycerol-2% SDS-5% mercaptoethanol-0.002% bromophenol blue) were heated at 100°C for 5 min. The gels were stained with 0.1% Coomassie brilliant blue R-250 and then with Bio-Rad silver.
Nondenaturing gel electrophoresis.
Nondenaturing gel
electrophoresis of exo-
-D-galactofuranosidase was
performed with the apparatus described above. Buffer systems are
described in Sigma technical bulletin MKR-137. Separating and stacking
gels contained 7 to 10% and 4% acrylamide solutions, respectively.
Samples were suspended in reducing buffer (pH 6.7; 50 mM
Tris-HCl-glycerol-H2O-bromophenol blue
[1:1:1:250, vol/vol/vol/wt]). The molecular weights were
determined using Ferguson plots (19) as explained in
detail in MKR-137. A retardation coefficient is obtained from a
determination of the slope obtained upon plotting log10(Rf × 100) versus percent
gel concentration for each protein. Plotting the log10
molecular weight of each reference protein versus the log10
negative slope establishes a linear plot for estimating the molecular
weight of exo-
-D-galactofuranosidase.
IEF.
Isoelectric focusing (IEF) of
exo-
-D-galactofuranosidase was performed with a
PhastSystem (Pharmacia). PhastGel IEF medium precast in homogeneous
(5% T, 3% C) polyacrylamide (pH 4.0 to 6.5) was used for
determination of the isoelectric point (17).
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RESULTS |
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Ion-exchange chromatography and gel permeation chromatography of
exo-
-D-galactofuranosidase.
Enzyme partially
purified from Raulin-Thom medium (35) contains acid
phosphatases and phosphodiesterases that also bind to
pPxGMii-Sepharose 4B
(39). These phosphatases were removed during the purification of exo-
-D-galactofuranosidase as described
in Materials and Methods. The glycohydrolase was purified approximately
100-fold (Table 1 and Fig.
2). Forty-five percent (25 U
mg
1) of the enzyme activity in the extracellular fluid
was recovered.
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Gel electrophoresis of
exo-
-D-galactofuranosidase.
Electrophoresis of the
purified enzyme in SDS resulted in a single band at 75 kDa.
Nondenaturing PAGE of this purified enzyme followed by staining with
Coomassie brilliant blue R-250 and Bio-Rad silver revealed bands at
approximately 150 and 70 kDa (data not shown). IEF of a purified
preparation on PhastGel IEF medium (pH 4.0 to 6.5) resulted in
one band at a pI of 4.35. In a companion experiment, the lane of gel
containing the enzyme was cut into 2-mm sections, and each section was
assayed for exo-
-D-galactofuranosidase activity. Only
one section contained significant activity; that activity coincided
with the location of the protein (data not shown).
Carbohydrate content. Mannose (2.7 µg) but no galactose was found in 16 µg of protein. Thus, the enzyme contains approximately 60 mannosyl residues per mol of enzyme, based on a molecular mass of 70 kDa for the glycoprotein.
Properties of
exo-
-D-galactofuranosidase.
The purified enzyme had
optimal activity from pH 4.0 to pH 4.5. When the enzyme was incubated
at 24°C for 24 h, the pH for optimum stability was maximal at pH
4.0 to 5.0 (20 U/mg); incubation at pH 3.5 and at pH 6.0 resulted in
activities of 17 and 10 U mg of protein
1, respectively.
The optimum temperature for enzyme activity in 60-min assays was
40°C. Activities decreased 10 and 40% at 50 and 60°C, respectively.
-D-galactofuranoside as a
control, none of the following potential substrates was
hydrolyzed:
1-O-(p-nitrophenyl)-
-D-galactopyranoside, 1-O-(p-nitrophenyl)-
-D-galactopyranoside,
1-O-(p-nitrophenyl)-
-N-acetyl-D-glucopyranosylamine, p-nitrophenyl-phosphocholine,
p-nitrophenyl-phosphate, or
bis-(p-nitrophenyl)-phosphate. The enzyme catalyzed the
hydrolysis of
1-O-(p-nitrophenyl)-
-D-galactofuranoside, with the release of p-nitrophenol. These data suggest
that R-O-phosphocholine phosphodiester:phosphocholine hydrolase and other phosphoesterase activities that bind pPxGM-Sepharose 4B
(39) have been removed.
Time course and extent of pP2GMii and
pP25GMii degalactosylation.
Galactose (15 µmol) was released from pP2GMii
(4.7 mg; ~3.0 mM nonreducing terminal galactofuranosyl residues) with
4 µg of exo-
-D-galactofuranosidase ml
1
at 24°C at a rate of 0.075 µmol h
1 over 200 h,
as monitored by optical rotation. Galactose (5.7 µmol) was released
from pP25GMii (3.2 mg; ~1.8 mM nonreducing
terminal galactofuranosyl residues) with 4 µg of enzyme
ml
1 at 24°C over 120 h. No galactose was released
from pP25GMii after 96 h. Thus, 87 and
52% of the galactose in pP2GMii and
pP25GMii, respectively, was released by
treatment with the enzyme. This treatment decreased the average chain
length of the galactofuran chains attached to
pP2GMii and pP25GMii
from a DP of 5.4 to 1.3 and from a DP of 6.0 to 3.7, respectively (Table 2). The number of galactofuran
chains per mol of pP2GMii decreased from 32 to
17, and that of pP25GMii decreased from 23 to
18. There was a negligible loss of phosphodiesters from the polymers
during treatment with the enzyme.
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5)-
-D-galactofuranooligosaccharides with DP of 3.4 and
5.5 or 1-O-methyl-
-D-galactofuranoside with
exo-
-D-galactofuranosidase resulted in greater than 99% hydrolysis in less than 96 h. Galactose was the only saccharide produced by the enzyme-catalyzed hydrolysis of
pP25GMii.
Based on paper chromatography with butanol-pyridine-H2O,
(6:4:3), the only saccharide product that eluted from a column of Bio-Gel P2 was coincident with reference galactose. Partially degraded
pP25GMii and protein eluted in the voided volume.
Kinetic properties of
exo-
-D-galactofuranosidase.
The initial velocities
of exo-
-D-galactofuranosidase-catalyzed hydrolysis of
nonreducing terminal galactofuranosyl residues of
pP2GMii and pP25GMii
were determined from 0.25 mM to 1.05 and 1.4 mM, respectively. Concentrations of 0.1 to 0.75 mM galactofuranooligosaccharides with DP
of 3.4 and 5.5 were used. The concentration range for 1-O-
-methyl-D-galactofuranoside was 2.4 to 11 mM.
1 s
1
was estimated from the reciprocal of the slope (Table
3). Concentrations of
pP25GMii of greater than 1.6 mM in nonreducing
terminal residues were too viscous to obtain valid data. The
kcat/Km values for
1-O-methyl-
-galactofuranoside, pP2GMii, and
5-O-
-D-galactofuranosides with DP of 3.4 and
5.5 are 1.1 × 103, 1.7 × 104,
1.7 × 105, and 4.1 × 105
M
1 s
1, respectively. These data show the
influence of phosphodiesters on the DP in the region of first-order
rate of hydrolysis.
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-methyl-D-galactofuranoside,
pP2GMii, and the
galactofuranooligosaccharides. kcat and
Km values for galactofuranooligosaccharides with
DP of 3.4 and 5.5 were 43 s
1 and 0.25 mM and 41 s
1 and 0.10 mM, respectively; those for
1-O-methyl-
-D-galactofuranoside and
pP2GMii were 29 s
1 and 2.6 mM and
14 s
1 and 0.80 mM, respectively. Removal of
phosphodiesters and increasing the DP decrease the apparent
Km and increase the kcat,
resulting in higher
kcat/Km values.
Influence of phosphate concentration in the culture medium on the
activity of exo-
-D-galactofuranosidase.
The kinetic
data suggest that the
exo-
-D-galactofuranosidase-catalyzed hydrolysis of
galactofuranosyl residues of phosphodiesters of
pP2GMii and especially those of
pP25GMii decreases with increasing
phosphodiester content. An experiment was performed to determine if
P. fellutanum cultures on medium initially containing either
2 or 20 mM phosphate removed the galactofuranosyl as well as the
phosphocholine residues from added
pPxGMii.
pPxGMii from day 8 cultures in
medium initially containing 20 mM phosphate served as the first
control (Fig. 3A). Natural-abundance
13C NMR signals at 110.6 and 109.6 ppm are those of
the C-1 atom of nonreducing terminal and internal galactofuranosyl
residues, respectively; the signal at 84.0 ppm is that of C-2 and C-4
and that at 80.1 ppm is that of C-5 of
5-O-
-D-galactofuranosyl residues (42). The signal at 56.83 ppm is that of methyl groups of
the phosphocholine phosphodiesters of
pPxGMii (29, 30, 40).
All other signals are from the mannopyranosyl residues.
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-D-galactofuranosyl signals at 109.6, 110.6, 84.0, and
80.1 ppm or a signal at 56.83 ppm for the methyl group of
phosphocholine. These data show that galactofuranosyl and choline or
phosphocholine residues were removed from added
pP25GMii between days 3 and 8.
Although it has been shown (29, 32) that the activity of
nonspecific R-O-phosphocholine
phosphodiester:phosphocholine hydrolase is low in cultures containing
20 mM phosphate and that this activity peaks at days 6 to 8 in cultures
containing 2 mM phosphate, the phosphate concentration in the culture
filtrate during the interval from day 3 to day 9 was not known. The
relative concentrations of inorganic phosphate in cultures of
Raulin-Thom medium initially containing 2 and 20 mM inorganic phosphate
are shown in Table 4. The concentration
of inorganic phosphate decreased from 2 to 0.42 mM in day 2 cultures
and decreased more slowly over the next 12 days. In contrast, the
decrease in phosphate concentration in 20 mM phosphate cultures was
much slower; the concentration was approximately 15 mM on day 14.
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-D-galactofuranosidase in culture filtrates on days
3, 5, 7, and 9. pPxGMii (1 mg ml of
culture
1) was added on day 3 to separate flasks of
Raulin-Thom medium initially containing 2 or 20 mM inorganic phosphate.
Each flask was pretreated for 24 h prior to sample removal with 0.1 mg
of phenylmethylsulfonyl fluoride ml of culture
1. No
activity was detected in day 3, 5, or 7 cultures. However, 2.2 U of
exo-
-D-galactofuranosidase activity was found in culture filtrates of day 9 medium containing 0.2 mM inorganic phosphate but not
in companion culture filtrates of medium containing 15 mM phosphate.
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DISCUSSION |
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The question of whether the phosphodiesters of
pPxGMii species have a role in
pPxGMii depolymerization could be
answered only by determining the kinetic properties of purified
exo-
-D-galactofuranosidase on two major pPxGMii species and oligosaccharides
derived from pPxGMii species.
Preliminary studies showed that
exo-
-D-galactofuranosidase did not bind to
pPxGMii-Sepharose 4B when
pPxGMii was obtained from cultures
maintained on a defined standard growth medium initially containing 20 mM phosphate (39). Furthermore, culture filtrates from
this medium, analyzed daily to day 30, contained no significant
exo-
-D-galactofuranosidase activity. At the outset of
this work, it became evident that affinity-purified (39)
exo-
-D-galactofuranosidase also contained acid
phosphomonoesterase and
R-O-phosphocholine:phosphocholine
hydrolase activities. A procedure for purification of the enzyme was
undertaken with the ultimate objective of determining the kinetic
properties of purified exo-
-D-galactofuranosidase in
reaction with each of the following substrates:
1-O-
-methyl-D-galactofuranoside,
5-O-
-D-galactofuranooligosaccharides, pP2GMii, and pP25GMii.
Table 3 shows that the apparent Km values for
the substrates ranged from 0.1 mM for
5-O-
-D-galactofuranooligosaccharide with a DP
of 5.5 to 2.6 mM for
1-O-
-methyl-D-galactofuranoside. The apparent
Km for pP25GMii was too
high to measure. However, its
kcat/Km value, which
measures the rate of conversion of substrate to the E · pP25GMii complex at concentrations of substrate
where the reaction is first order with respect to the substrate, was
nearly sevenfold lower than that of
1-O-
-methyl-D-galactofuranoside. This result and the fact that velocity increased linearly over the range of pP25GMii concentrations up to 1.5 mM suggest
that the rate of pP25GMii binding to the enzyme
(k1) is much lower than the
k1 values of other substrates binding to the
enzyme, especially
5-O-
-D-galactofuranooligosaccharides. Furthermore, if the rate of binding is decreased, then it is likely that the stability of the E · pP25GMii
binary complex will be decreased in such a manner as to increase k
1. The kcat of
these substrates varied from 43 s
1 to 14 s
1. The Km and
kcat/Km values for
pP25GMii are consistent with the inability of
the enzyme to bind to pP10GMii-Sepharose 4B
(39).
The multiple charges and N-trimethyl groups in
pP25GMii, compared with those in
pP2GMii, may inhibit the binding of
galactofuranosyl residues in the proper orientation and may also
decrease the stability of the E · pP25GMii complex compared with that of the
E · pP2GMii complex. Thus, a decreased
rate of binding of the E · pP25GMii
complex and the formation of a less stable E · pP25GMii complex that has an increased
k
1 are also consistent with the
Km values of pP25GMii
and pP2GMii and with those of
5-O-
-D-galactofuranooligosaccharides.
The kcat values ranged from 43 s
1
for galactofuranooligosaccharide with a DP of 5.5 to 14 s
1 for pP2GMii. The
kcat for pP25GMii
could not be calculated; however, if kcat for
pP25GMii was also 14 s
1, then
Km for that substrate would be 8.2 mM. From the
data it is apparent that multiple phosphodiesters attached to the
saccharides of pPxGMii species serve
to modulate the activity of exo-
-D-galactofuranosidase.
Based on these data, the least complex representation of
pPxGMii binding to the enzyme,
catalysis, and release of products is shown in Fig.
4. This model describes the release of
one galactofuranose (Gf) residue in a reaction sequence
describing the initial-velocity steady-state condition in which the
polymer dissociates after each nth round of hydrolysis. Note
that the second and third steps are shown as being not significantly
reversible. Under these conditions and because the values for
k
2 and k
3 are
both ~0, the terms expressing Km can be shown
in equation 1 and those for kcat and
kcat/Km can be shown in
equations 2 and 3:
|
(1) |
|
(2) |
|
(3) |
-methyl-D-galactofuranoside and the two
galactofuranooligosaccharides are about the same and that the
kcat value of pP2GMii is
only threefold lower than the maximum rate. We conclude that the two
phosphodiesters in pP2GMii do not play large
role in dictating the magnitude of kcat for hydrolysis.
|
At a low concentration of enzyme relative to substrate, as exists in
culture filtrates, the values of k1 and
k
1 become major determinants of the apparent
Km, especially when k1 is
only about 2 orders of magnitude higher than
k
1. Furthermore, the
kcat/Km ratio at a very
low concentration of pPxGMii is
approximated by the reciprocal of the slope of the line generated by a
plot of 1/[pPxGMii] versus
1/V0, that is,
k1k2/(k2 + k
1), if k2 is much
lower than k3 and k 4.
However, the k
1/k2
ratio has the potential to be of major importance if
k
1 increases with increasing numbers of
phosphodiester residues and k1 decreases.
At physiological concentrations of
pPxGMii (~50 µM nonreducing
terminal galactofuranosyl residues), the average rate of hydrolysis of
pP2GMii nonreducing terminal galactofuranosyl
residues in day 18 medium containing 1.5 µg of enzyme
ml
1 is approximately 66 µM h
1. Thus, that
for pP25GMii would be 6.6 µM
h
1. Therefore, pP2GMii is
approximately a 10-fold better substrate than
pP25GMii at physiological extracellular
concentrations of both potential substrates (Table 3).
Extended treatment of pP2GMii that contained
only about two phosphodiester residues with
exo-
-D-galactofuranosidase reduced the average galactan
chain DP to 1.3 residues and reduced the number of galactan chains from
32 to 17. After similar treatment of pP25GMii,
the DP was not reduced below 3.7 by further incubation, and there were
only five fewer galactan chains. We conclude that the phosphodiester
residues in pPxGMii serve to limit
the rate of release of galactofuranosyl residues. As the charged
phosphodiester residues are removed, the number of galactofuranosyl
residues in the galactofuran chains serves to regulate their rate of release.
The presence of extracellular
exo-
-D-galactofuranosidase activity is influenced
indirectly by the concentration of phosphate in the medium.
Extracellular pPxGMii added to day 3 cultures initially containing 2 mM phosphate lost its galactofuranosyl
residues as well as its choline or phosphocholine residues by day
8. A burst of R-O-phosphocholine:phosphodiester phosphocholine hydrolase activity between days 4 and 8 has been noted
previously (15, 31). In contrast,
pPxGMii isolated from control
cultures initially containing 20 mM phosphate retained galactofuranosyl
and phosphocholine phosphodiester residues. Negligible
R-O-phosphocholine:phosphocholine
hydrolase or exo-
-D-galactofuranosidase activities
are present in P. fellutanum culture filtrates obtained between days 3 and 16 from cultures initially containing 20 mM phosphate (36). Extracellular
exo-
-D-galactofuranosidase activity usually appears in
the medium soon after day 16. The addition of
pPxGMii to day 3 low-phosphate
medium resulted in the release of sufficient R-O-phosphocholine:phosphodiester
phosphocholine hydrolase and exo-
-D-galactofuranosidase
activities to remove essentially all of the phosphocholine and
galactofuranosyl residues from extracellular pPxGMii by day 8 (Fig. 3C).
In separate experiments, the concentration of inorganic phosphate was measured in filtrates of P. fellutanum cultures initially containing 2 or 20 mM inorganic phosphate. The data establish that there is a rapid depletion of phosphate to 0.4 mM by day 2 and 0.2 mM by day 9 in cultures initially containing 2 mM inorganic phosphate (Table 4). The culture that initially contained 20 mM phosphate absorbed only about one-half of the phosphate over 17 days.
Approximately 2.2 U of exo-
-D-galactofuranosidase was
found in day 9 culture filtrates containing approximately 0.2 mM
phosphate after the addition of 200 mg of
pPxGMii on day 3 and 25 mg of
phenylmethylsulfonyl fluoride on day 8 (Table 4). No
galactofuranosidase activity was detected in cultures initially
containing 20 mM phosphate. These data are consistent with those
obtained upon examining pPxGMii by
NMR spectroscopy (Fig. 3C).
Examination of the results of subjecting
pP25GMii and pP2GMii to
digestion for 130 and 200 h, respectively, with
exo-
-D-galactofuranosidase showed that both the rate and
the extent of galactofuranosyl hydrolysis of
pP25GMii were diminished compared with those of
pP2GMii as a substrate. Nevertheless, both the
DP of pP25GMii galactan chains and the average
number of galactofuranosyl residues per chain were decreased
significantly, even though slowly. These data are also consistent with
the previous finding of as many as 40 galactan chains per molecule of
pP40GMii in day 4 to 5 cultures (9,
15) but only 10 galactan chains in day 10 culture filtrates that
had low exo-
-D-galactofuranosidase activity
(35).
We conclude that the phosphodiesters of extracellular
pPxGMii modify the kinetic
parameters of exo-
-D-galactofuranosidase activity and
thus modulate the rate of galactofuranosyl hydrolysis until these
phosphodiesters are removed by extracellular phosphodiesterases. This
notion suggests a relationship in which the early depletion of
phosphate from the medium results in the release of extracellular R-O-phosphocholine:phosphocholine
hydrolase activity, which in turn initiates the removal of
phosphocholine residues from pP60GMii. As the
number of phosphocholine residues in
pPxGMii decreases, the
pPxGMii species become increasingly
better substrates for exo-
-D-galactofuranosidase because
the kcat/Km value
increases with decreasing number of phosphodiesters.
| |
ACKNOWLEDGMENTS |
|---|
We thank James F. Preston, Department of Microbiology and Cell Science, University of Florida, and Sandra J. Bonetti, Department of Chemistry, University of Southern Colorado, for reviewing the manuscript and for useful comments and Penelope A. Naranjo, Los Alamos National Laboratory, for assistance with some of the experiments.
This research was supported by the Florida Agricultural Experiment Station.
| |
FOOTNOTES |
|---|
* Corresponding author. Mailing address: 4219 Rancho Grande Pl. N.W., Albuquerque, NM 87120-5337. Phone: (505) 898-4128.
Florida Agricultural Experiment Station Journal Series no. R06884.
Present address: MDS Proteomics, Inc., Toronto, Ontario M9W
7H4, Canada.
§ Present address: Korea Research Institute of Bioscience and Biotechnology, Environmental Bioresources Laboratory, 52 Oeon-dong, Yusong, Taejon 305-333, Korea.
| |
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