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Applied and Environmental Microbiology, October 2001, p. 4671-4677, Vol. 67, No. 10
0099-2240/01/$04.00+0 DOI: 10.1128/AEM.67.10.4671-4677.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Group-Specific Monitoring of Phenol Hydroxylase
Genes for a Functional Assessment of Phenol-Stimulated
Trichloroethylene Bioremediation
Hiroyuki
Futamata,
Shigeaki
Harayama, and
Kazuya
Watanabe*
Marine Biotechnology Institute, Kamaishi
Laboratories, Heita, Kamaishi City, Iwate 026-0001, Japan
Received 2 April 2001/Accepted 20 July 2001
 |
ABSTRACT |
The sequences of the largest subunit of bacterial multicomponent
phenol hydroxylases (LmPHs) were compared. It was found that LmPHs
formed three phylogenetic groups, I, II, and III, corresponding to
three previously reported kinetic groups,
low-Ks (the half-saturation constant
in Haldane's equation for trichloroethylene [TCE]),
moderate-Ks, and
high-Ks groups. Consensus sequences
and specific amino acid residues for each group of LmPH were found,
which facilitated the design of universal and group-specific PCR
primers. PCR-mediated approaches using these primers were applied to
analyze phenol/TCE-degrading populations in TCE-contaminated aquifer
soil. It was found that the aquifer soil harbored diverse genotypes of
LmPH, and the group-specific primers successfully amplified LmPH
fragments affiliated with each of the three groups. Analyses of
phenol-degrading bacteria isolated from the aquifer soil confirmed the
correlation between genotype and phenotype. Competitive PCR assays were
used to quantify LmPHs belonging to each group during the enrichment of
phenol/TCE-degrading bacteria from the aquifer soil. We found that an
enrichment culture established by batch phenol feeding expressed low
TCE-degrading activity at a TCE concentration relevant to the
contaminated aquifer (e.g., 0.5 mg liter
1); group II and
III LmPHs were predominant in this batch enrichment. In contrast, group
I LmPHs overgrew an enrichment culture when phenol was fed
continuously. This enrichment expressed unexpectedly high TCE-degrading
activity that was comparable to the activity expressed by a pure
culture of Methylosinus trichosporium OB3b. These
results demonstrate the utility of the group-specific monitoring of
LmPH genes in phenol-stimulated TCE bioremediation. It is also suggested that phenol biostimulation could become a powerful TCE bioremediation strategy when bacteria possessing group I LmPHs are
selectively stimulated.
 |
INTRODUCTION |
In the last two decades,
microbial ecology has developed molecular approaches, especially that
known as the rRNA phylogenetic framework, in order to analyze
microbial populations in the environment without cultivation (1,
22, 23). Molecular approaches have expanded our knowledge of the
diversity and distribution of microbial populations in the environment.
Genes coding for catabolic enzymes such as methane monooxygenase
(12, 13, 18), ammonia monooxygenase (23, 31),
catechol dioxygenase (21), and phenol hydroxylase (38) have also been retrieved from the environment in
order to gain insight into the genetic diversity of catabolic
populations. It is currently expected that such genetic information
could aid in understanding and advancing bioremediation (34, 40,
41).
Contamination of the subsurface environment with chlorinated
hydrocarbons, in particular trichloroethylene (TCE) and
perchloroethylene, is a potentially serious threat to drinking-water
sources. A number of laboratory studies have demonstrated that
aliphatic and aromatic hydrocarbon-degrading bacteria, such as
methane-, toluene- and phenol-degrading bacteria, cometabolically
transform these compounds to readily degradable oxygenated compounds
(6, 29). In addition, field trials in which these bacteria
were used for TCE bioremediation have been reported (16,
28). We are currently studying phenol-degrading bacteria with
the aim of developing efficient TCE bioremediation strategies. It has
been found that the kinetics for TCE degradation exhibited by
phenol-degrading bacteria are diverse and can be classified into three
distinct kinetic groups, low-Ks (the
half-saturation constant in Haldane's equation for TCE),
moderate-Ks, and
high-Ks groups (9).
Laboratory axenic culture experiments have suggested that only
low-Ks bacteria are capable of efficient
TCE degradation at a concentration relevant to contaminated groundwater
(9).
It is desirable for phenol-stimulated TCE bioremediation (phenol
biostimulation) to develop rapid methods for specifically detecting and
quantifying the three groups of phenol-degrading bacteria in the
environment. Such a technique would provide useful information for
predicting the TCE degradation potential of indigenous bacterial
populations, developing effective phenol biostimulation schemes, and
evaluating results of enforced phenol biostimulation. For this purpose,
this study analyzed genes for the largest subunit of multicomponent
phenol hydroxylases (LmPHs) and designed group-specific PCR primers for
LmPHs. The utility of PCR approaches with these primers was
evaluated by analyzing TCE-contaminated aquifer soil.
 |
MATERIALS AND METHODS |
Bacterial strains and culture conditions.
The
phenol-degrading bacteria used in this study were Burkholderia
cepacia E1 (37), Comamonas sp. strain E6
(37), Comamonas testosteroni
R2 (37) and R5 (37), Pseudomonas
sp. strain WAS2 (37), Pseudomonas putida P-2
(8), P. putida P-5 (8), P. putida P-6 (8), P. putida P-8
(9), and P. putida P-10 (9). These
bacteria were grown at 25°C in BSM medium (9)
supplemented with phenol at 2.0 mM.
Soil sample.
A soil sample was obtained from a
TCE-contaminated sandy aquifer at a depth between 2.0 and 2.5 m
(Kururi, Chiba, Japan), where TCE was detected at between 100 and 500 µg liter
1. One gram of the wet soil was
suspended in 10 ml of potassium phosphate buffer (10 mM, pH 7.0), and
after vortexing and gently sonicating, it was appropriately diluted
with the buffer. The total direct count (TDC) of microbial cells in the
suspension was estimated by fluorescence microscopy after staining
microorganisms with 4',6'-diamidino-2-phenylindole (DAPI)
(39).
DNA extraction.
DNA was extracted from 5 g (wet weight)
of the aquifer soil by the method described by Zhou et al.
(42) with some modifications. Three cycles of the
freeze-thaw treatment (33) were performed after the
initial sodium dodecyl sulfate lysis step. Final DNA purification was
conducted with a Suprec-2 column (Takara Shuzo). DNA was extracted from
each bacterial culture by the method described previously
(39). The quality and quantity of the extracted DNA were
checked by measuring the UV absorption spectrum (27).
PCR conditions.
Repetitive extragenic palindromic sequence
PCR (rep-PCR) was conducted by using the primers REP1R-I and REP2-I
(3) as described previously (38).
DNA fragments of 16S rRNA genes (16S rDNA) were amplified by using
primers 5'-AGAGTTTGATCCTGGCTCAG-3' (corresponding to
Escherichia coli 16S rDNA positions 8 to 27 [2]) and 5'-AAGGAGGTGATCCAGCC-3' (corresponding to E. coli 16S rDNA positions 1525 to
1542). Amplification was performed with a Progene thermal cycler
(Techne) by using a 50-µl mixture containing 1.25 U of Taq
DNA polymerase (Amplitaq Gold; Applied Biosystems), 10 mM Tris-HCl (pH
8.3), 50 mM KCl, 1.5 mM MgCl2, 0.001% (wt/vol)
gelatin, each deoxynucleoside triphosphate at a concentration of 200 µM, 100 pmol of each primer, and 50 ng of template DNA. The PCR
conditions were 10 min for activating the polymerase at 94°C and then
35 cycles of 1 min at 94°C, 1 min at 54°C, and 1 min at 72°C, and
finally 10 min of extension at 72°C.
DNA fragments coding for the largest subunit of multicomponent phenol
hydroxylases (LmPH) were amplified by using the Progene
thermal cycler
and 50-µl mixtures just described. The primers
used are listed in
Table
1. The PCR conditions for the two
primer
sets phe1f and phe3r (hereafter described as phe1f/phe3r) and
phe2f/phe4r, were as follows: step 1, 10 min of activation at
94°C;
step 2, 35 cycles consisting of 1 min at 94°C, 1 min at
56°C, and 1 min at 72°C; step 3, 10 min of extension at 72°C.
The PCR
conditions used for the three primer sets pheUf/pheUr,
pheUf/pheMHr,
and pheUf/pheHr were as follows: step 1, 10 min
of activation at
94°C; step 2, five cycles consisting of 1 min
at 94°C, 1 min at
58°C, and 1 min at 72°C; step 3, five cycles
consisting of 1 min at
94°C, 1 min at 57°C, and 1 min at 72°C;
step 4, 25 cycles
consisting of 1 min at 94°C, 1 min at 56°C,
and 1 min at 72°C;
step 5, 10 min of extension at 72°C. The PCR
conditions used for
primer set pheUf/pheLr were as follows: step
1, 10 min of activation at
94°C; step 2, five cycles consisting
of 1 min at 94°C, 1 min at
55°C, and 1 min at 72°C; step 3, five
cycles consisting of 1 min at
94°C, 1 min at 54°C, and 1 min at
72°C; step 4, 25 cycles
consisting of 1 min at 94°C, 1 min at
53°C, and 1 min at 72°C;
step 5, 10 min of extension at 72°C.
The PCR products were checked by
electrophoresis through 1.5%
(wt/vol) agarose gel (LO3 agarose; Takara
Shuzo) in TBE buffer
(
27) and then staining with ethidium
bromide.
Sequence analysis.
The PCR products were ligated into pUC18
(27) and cloned into E. coli JM109 by using a
Sure clone ligation kit (Amersham Pharmacia Biotech.). Plasmids were
purified from the JM109 colonies by the standard miniprep procedure
(27) and used as templates for nucleotide sequencing. The
nucleotide sequences were determined by using a DNA sequencing kit (Dye
Terminator Cycle Sequencer; Applied Biosystems), an appropriate PCR
primer (1 pmol), and a model 377 DNA sequencer (Applied Biosystems).
The primers used for sequencing 16S rDNA fragments have been described
by Edwards et al. (4). The GenBank database search was
conducted with the Blast program. The sequences were aligned by using
ClustalW version 1.7 (36), and the alignment was refined
by visual inspection. A neighbor-joining tree (26) was
constructed by using the njplot software in ClustalW version 1.7.
Competitive PCR.
Competitor fragments were produced by using
a competitive DNA construction kit (Takara Shuzo). The sizes of the
competitor fragments were 444 bp for pheUf/pheUr, 441 bp for
pheUf/pheLr, 442 bp for pheUf/pheMHr, and 343 bp for pheUf/pheHr. The
PCR conditions were as described above except for the addition of an
appropriate amount of the competitor fragment. The PCR products were
separated by electrophoresis through 2.0% (wt/vol) agarose gel, and
stained with ethidium bromide. The band intensity was quantified by
using image-processing software (NIH Image, version 1.60; National
Institutes of Health), and the copy number of a target sequence in the
PCR mixture was determined by comparing band intensities.
Isolation of bacteria. (i) Direct plating.
The diluted soil
suspensions described above were spread on agar plates containing
1/10th-strength TSB medium (Difco) supplemented with phenol at 2.0 mM
(1/10TSB200 plate). After the plates had been incubated at 25°C for
14 days, all the colonies that appeared on one plate were picked and
purified by restreaking.
(ii) Chemostat enrichment.
Eight hundred milliliters of an
inorganic medium (MP medium [37]) in a TBR-2 fermentor
(2-liter capacity; Sakura Fine Technical) was supplemented with phenol
at 0.5 mM and inoculated with 10 g (wet) of the aquifer soil. The
vessel was agitated at 150 rpm for 24 h at 25°C, and MP medium
containing 1,500 mg of phenol liter
1 (16 mM)
was then continuously supplied at a rate of 670 ml
day
1. Air was supplied at a rate of 2 liters
min
1. The culture volume was maintained at 1.5 liters, and the temperature was kept at 25°C. Eight days after
commencing the cultivation, when the culture parameters (phenol
concentration, optical density at 660 nm
[OD660], and dissolved oxygen concentration
[DO]) had become stable, a small portion of the culture was sampled.
This was then appropriately diluted and streaked onto agar plates
containing MP medium supplemented with phenol at 0.5 mM. The plates
were incubated at 25°C for 14 days, and all the colonies on one plate were picked and purified.
TCE-degrading activity.
This study employed the
pseudo-first-order degradation rate constant
k1 (32) to describe the
TCE-degrading activity according to previous studies (9, 10, 30,
32). The k1 value was determined by
the method described previously (9) at a TCE concentration
of 0.5 mg liter
1, since this is the typical TCE
concentration in a contaminated aquifer (10, 17).
Enrichment of phenol-degrading bacteria from aquifer soil. (i)
Batch phenol feeding.
One liter of BSM medium in a TBR-2 fermentor
was inoculated with the aquifer soil (20 g wet), and phenol was then
added at 0.2 mM. The vessel was agitated at 150 rpm and 25°C. Air was
supplied at 1.5 liters min
1. When the
OD660 had stopped increasing, a small portion of
the culture was sampled. TDC of the culture was determined by the epifluorescence microscopy method after the cells had been stained with DAPI.
(ii) Continuous phenol feeding.
After the sampling, BSM
medium containing 1,500 mg of phenol liter
1 (16 mM) was continuously supplied to the batch-fed culture at a rate of 500 ml day
1, and the culture volume was maintained
at 1.0 liter. The phenol concentration was measured by high-performance
liquid chromatography as described previously (9). The
detection limit was 2.5 µg liter
1
(approximately 26 nM). After culture parameters
(OD660 and DO) had become stable and the phenol
concentration dropped below the detection limit, a small portion of the
culture was sampled.
Statistics.
Data were statistically analyzed by the Student
t test. A value of P = 0.05 was considered significant.
Nucleotide sequence accession numbers.
The nucleotide
sequences reported in this paper have been deposited in the GSDB, DDBJ,
EMBL, and NCBI nucleotide sequence databases under accession
numbers AB051680 to AB051754.
 |
RESULTS AND DISCUSSION |
Design of PCR primers.
In phenol-degrading bacteria, phenol
hydroxylase (2-monooxygenase) catalyzes the cometabolic transformation
of TCE (6). Two types of phenol hydroxylase are known,
single-component and multicomponent enzymes (11); among
them, multicomponent enzymes are considered the major ones in the
environment (24, 38). The catalytic domain of
multicomponent phenol hydroxylase has been found to exist within LmPH,
as exemplified by DmpN of Pseudomonas sp. strain CF600
(7, 15). We thus compared the amino acid sequences of
LmPHs of six previously cloned phenol hydroxylases, DmpN
(20), PhhN from P. putida P35X
(19), PhlD from P. putida H (14),
PheA4 from P. putida BH (35), PoxD from
Ralstonia eutropha E2 (15), and MopN of
Acinetobacter calcoaceticus NCIB8250 (5). We
identified consensus amino acid sequences which were used to design the
degenerate PCR primers phe1f, phe2f, phe3r, and phe4r (Table 1). These
primers enabled the LmPH fragments of strains E1, E6, R2, R5, WAS2,
P-2, P-5, P-6, P-8, and P-10 to be amplified and sequenced, although
fragments with improper sizes were also amplified. Figure
1A shows the phylogenetic relationship among LmPHs of the 13 phenol-degrading bacteria that were used in our
previous study (9). It was found that LmPHs formed three groups (I, II, and III), corresponding to the three kinetic groups identified in our previous study (9). Group I comprised
only LmPHs of the low-Ks-type bacteria,
group II comprised only LmPHs of
moderate-Ks-type bacteria, while group III
comprised only LmPHs of high-Ks-type
bacteria.

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FIG. 1.
Sequence analyses of LmPHs used for designing the
group-specific PCR primers. (A) An unrooted neighbor-joining tree based
on the nucleotide sequences of LmPHs, showing the phylogenetic
relationship among 13 phenol-degrading bacteria. Sequences
corresponding to nucleotide positions 121 to 1373 of the
dmp sequence (20) were used for
calculation. Nucleotide positions at which any sequence had a gap were
not included in the calculations. Numbers at the branch nodes are
bootstrap values (per 100 trials); only values greater than 50 are
indicated. The bar represents 0.03 substitution per site. (B) Signature
amino acids for the three groups of LmPH. Regions used for designing
the group-specific degenerate primers are underlined. Numbers above the
sequence correspond to the numbering in the DmpN sequence
(20).
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By comparing the deduced amino acid sequences of these 13 LmPHs, we
found specific amino acid residues for each of the three
LmPH groups
(Fig.
1B), which were then used to design group-specific
PCR primers
(Table
1). The universal PCR primers pheUf and pheUr
for all LmPH genes
were also designed (Table
1). LmPH fragments
could be amplified by
using pheUf/pheUr from all 13 of the phenol-degrading
bacteria,
while the combination of the group-specific primers
with
pheUf allowed the specific amplification of each group of
LmPH
(Fig.
2, for example).

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FIG. 2.
PCR amplification of LmPH fragments from bacterial
strains and the aquifer soil. Lane M, DNA size markers (100-bp DNA
ladder from 100 to 1,500 bp; Takara Shuzo); lanes 1 to 4, soil DNA;
lanes 5 and 7, Pseudomonas sp. strain CF600; lane 6, C. testosteroni R5; lane 8, P. putida
P-2. The PCR primers used were pheUf/pheUr (lanes 1 and 5), pheUf/pheLr
(lanes 2 and 6), pheUf/pheMHr (lanes 3 and 7), and pheUf/pheHr (lanes 4 and 8).
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|
Diversity of LmPH in TCE-contaminated aquifer.
The four sets
of primers were used to analyze LmPHs in TCE-contaminated aquifer soil
that had no history of exposure to aromatic compounds, including
phenol. The PCR primers successfully amplified LmPH fragments of the
expected sizes from DNA extracted from the soil (Fig. 2). The
nucleotide sequences of 41 LmPH fragments were then determined, and 24 different sequence types were obtained (Fig.
3). This figure shows that LmPH fragments
amplified by using pheUf/pheUr were distributed in groups I and III;
among them, LmPHs in group I were very diverse. All LmPHs amplified by
using pheUf/pheLr were affiliated with group I, while all LmPHs
amplified by using pheUf/pheMHr or pheUf/pheHr were affiliated with
group III.

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FIG. 3.
Unrooted neighbor-joining tree based on the nucleotide
sequences of LmPHs, showing the phylogenetic relationship among
phenol-degrading bacteria isolated from the aquifer soil (HAB and LAB
strains), LmPH fragments amplified directly from the aquifer soil DNA
(PCRTD amplified by using pheUf/pheUr, PCRLD amplified by using
pheUf/pheLr, PCRMHD amplified by using pheUf/pheMHr, and PCRHD
amplified by using pheUf/pheHr) and known phenol-degrading bacteria.
Sequences corresponding to nucleotide positions 195 to 668 of the
dmp sequence (20) were used for
calculation. Nucleotide positions at which any sequence had a gap were
not included in the calculations. Numbers at the branch nodes are
bootstrap values (per 100 trials); only values greater than 50 are
indicated. Numbers in parentheses indicate the number of identical
sequence types. The bar represents 0.021 substitution per site.
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Bacteria were isolated in parallel from the aquifer soil by direct
plating or plating after enrichment in a chemostat culture.
Among the
84 colonies isolated by direct plating, LmPH fragments
were amplified
by using pheUf/pheUr from 12 strains (the LAB strains
in Table
2). Most of the remaining 72 strains are
considered
not to be phenol-degrading bacteria, since none of 20 strains
randomly selected from these 72 strains could grow on phenol
(data
not shown). Among the 28 strains isolated after chemostat
enrichment,
12 strains were positive in PCR by using pheUf/pheUr (the
HAB
strains in Table
2). The pheUf/pheUr PCR-positive strains could
grow on phenol as the sole carbon source, except for HAB-22 and
LAB-27.
The characteristics of the LAB and HAB strains are summarized in Table
2. Judging from the 16S rRNA and LmPH gene sequences
and rep-PCR
patterns, it was concluded that none of these 24 strains
had identical
features. Sequence analyses of the LmPH fragments
amplified by using
pheUf/pheUr show that the HAB strains possessed
group I LmPHs, while
the LAB strains possessed group III LmPHs
(Fig.
3). This clear
discrimination between the HAB and LAB strains
was confirmed by PCR
analyses with the group-specific primers
(Table
2), demonstrating the
accuracy of these primers. In addition,
phenotypic data, i.e., the
TCE-degrading activity (at 0.5 mg liter
1)
expressed by the
k1 value, further
supported this discrimination
between the HAB and LAB strains (Table
2). Our previous study
found that the three kinetic groups of
phenol-degrading bacteria
could be rapidly discriminated by their
k1 values (
9); i.e.,
k1 <2 liters g
1
h
1 for the high-
Ks
group, 2 <
k1 < 10 for the
moderate-
Ks group,
and
k1 > 10 for the
low-
Ks group. Based on this criterion, the
HAB strains could be affiliated with the
low-
Ks group, while the
LAB strains were
affiliated with the high-
Ks group. These
results
indicate that the LmPH genotype is correlated with TCE
degradation
activity.
We found that a group of phenol-degrading bacteria (the high-activity
group in Fig.
3), including strains HAB-24, HAB-27,
HAB-29, and HAB-30,
expressed unexpectedly high TCE-degrading
activities (Table
2). The
k1 values of known TCE-degrading bacteria
have been reported, e.g., 69 liters g
1
h
1 for
Methylosinus trichosporium
OB3b (
10), 22 for
B. cepacia G4
(
10), and 35 for
C. testosteroni R5
(
9). The present results
thus expand our knowledge of the
physiological diversity of TCE-degrading
bacteria in the environment.
In addition, we suggest that our
group-specific PCR is useful for
screening phenol-degrading bacteria
that exhibit high TCE-degrading
activities. The potential of the
high-activity strains, particularly
strain HAB-30, for bioaugmentation
is also
suggested.
Group-specific monitoring of LmPHs.
The competitive PCR assay
was developed to estimate the total copy number of LmPH genes belonging
to each of the three groups. The total number of group II LmPHs was
estimated by subtracting the copy number obtained by using pheUf/pheHr
from that obtained by using pheUf/pheMHr. We found that the group III
LmPHs were most abundant in the original aquifer soil (Table
3) and that the copy number was not
significantly different from the copy number of total LmPH (determined
by using pheUf/pheUr). When soil bacteria were grown aerobically after
being supplemented with 0.2 mM phenol (batch feeding), the group II and
III LmPHs increased vigorously to over 108 copies
ml
1 (Table 3). In contrast, when phenol was
supplied continuously (continuous feeding), cluster I LmPH overgrew the
soil culture, and its copy number was 67% of the TDC value. The data
presented in Table 3 illustrate that the majority of phenol-degrading
bacteria in the aquifer soil could be detected by the PCR assay
developed in this study when phenol was supplied.
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TABLE 3.
Group-specific monitoring of LmPHs in the
TCE-contaminated aquifer soil and in enrichment cultures growing on
phenola
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The
k1 value for the enrichment culture
established by continuous phenol feeding was much higher than that
established by
batch feeding (Table
3). This result was considered to
be consistent
with the results of the LmPH population analysis (Table
3). The
k1 value for the batch-fed
consortium was considered insufficient
for the degradation of TCE at a
concentration relevant to that
in a contaminated aquifer
(
9). In contrast, the
k1
value for
the continuously fed consortium was unexpectedly high and is
comparable
to the value expressed by a pure culture of
M. trichosporium OB3b
(
10). Molecular population
analyses have suggested that the
high-activity group bacteria were
major members of this consortium
(data not shown). During the
continuous-feeding experiment, phenol
was almost completely degraded
(below the detection limit). This
is likely to have been achieved by
bacteria possessing group I
LmPHs, since they correspond to
low-
Ks-type bacteria that also
exhibit
high affinities for phenol (
9). The data thus suggest
that
phenol biostimulation could be a powerful TCE bioremediation
strategy
if bacteria possessing group I LmPHs can be selectively
stimulated.
Conclusions.
The phylogenetic analyses (Fig. 1 and 3) in
combination with analyses of the TCE degradation activities of the
isolated bacteria (8) (Table 2) revealed a clear
correlation between the LmPH genotypes and TCE degradation activities,
which facilitated group-specific monitoring of the different
types of phenol-degrading bacteria. It must be impossible to
trace all the different species of diverse microbial populations
in the natural environment; we thus suggest that group-specific
analyses as conducted in this study would be a practical way for
understanding and managing natural microbial consortia.
When phenol-degrading bacteria possessing group I LmPHs were dominant,
the soil enrichment culture expressed very high TCE
degradation
activity (Table
3); this was achieved by the continuous
feeding of
phenol to the aquifer soil. Shih et al. have also shown
that the phenol
feeding pattern altered the microbial community
structure and
cometabolic TCE-degrading activity (
30). In contrast
to
the results from the present study, after long-term operation,
a
consortium established by the pulse addition of phenol showed
a much
higher TCE transformation rate than a consortium established
by
continuous phenol feeding. They observed that the continuous
culture
became overgrown by filamentous microorganisms, especially
fungi, which
were incapable of TCE degradation or only slowly
degraded TCE,
suggesting that complex microbial successions may
occur during
long-term operation. Further studies are thus needed
to develop
effective phenol-feeding schemes for the enrichment
and maintenance of
microbial consortia which express high TCE-degrading
activity.
 |
ACKNOWLEDGMENTS |
We thank Sachiko Kawasaki for technical assistance.
This work was performed under the management of Research Institute of
Innovative Technology for the Earth (RITE) as part of the Research and
Development Project on In Situ Soil Bioremediation supported by the New
Energy and Industrial Technology Development Organization (NEDO).
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Marine
Biotechnology Institute, Kamaishi Laboratories, 3-75-1 Heita, Kamaishi
City, Iwate 026-0001, Japan. Phone: 81-193-26-5781. Fax:
81-193-26-6592. E-mail:
kazuya.watanabe{at}kamaishi.mbio.co.jp.
 |
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Applied and Environmental Microbiology, October 2001, p. 4671-4677, Vol. 67, No. 10
0099-2240/01/$04.00+0 DOI: 10.1128/AEM.67.10.4671-4677.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
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