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Applied and Environmental Microbiology, November 2001, p. 4963-4974, Vol. 67, No. 11
0099-2240/01/$04.00+0 DOI: 10.1128/AEM.67.11.4963-4974.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Accumulation of Polyhydroxyalkanoic Acid Containing
Large Amounts of Unsaturated Monomers in Pseudomonas
fluorescens BM07 Utilizing Saccharides and Its Inhibition by
2-Bromooctanoic Acid
Ho-Joo
Lee,1
Mun
Hwan
Choi,1
Tae-Un
Kim,2 and
Sung Chul
Yoon1,3,*
Biomaterials Science Laboratory, Division of
Life Science at the College of Natural Sciences3
and Division of Applied Life Sciences at the Graduate
School,1 Gyeongsang National University, Chinju
660-701, and Department of Clinical Laboratory Science,
Catholic University of Pusan, Pusan 609-757,2
Korea
Received 11 December 2000/Accepted 6 August 2001
 |
ABSTRACT |
A psychrotrophic bacterium, Pseudomonas fluorescens
BM07, which is able to accumulate polyhydroxyalkanoic acid (PHA)
containing large amounts of 3-hydroxy-cis-5-dodecenoate
unit up to 35 mol% in the cell from unrelated substrates such as
fructose, succinate, etc., was isolated from an activated sludge in a
municipal wastewater treatment plant. When it was grown on heptanoic
acid (C7) to hexadecanoic acid (C16) as the
sole carbon source, the monomer compositional characteristics of the
synthesized PHA were similar to those observed in other fluorescent
pseudomonads belonging to rRNA homology group I. However, growth on
stearic acid (C18) led to no PHA accumulation, but instead
free stearic acid was stored in the cell. The existence of the linkage
between fatty acid de novo synthesis and PHA synthesis was confirmed by
using inhibitors such as acrylic acid and two other compounds,
2-bromooctanoic acid and 4-pentenoic acid, which are known to inhibit
-oxidation enzymes in animal cells. Acrylic acid completely
inhibited PHA synthesis at a concentration of 4 mM in 40 mM
octanoate-grown cells, but no inhibition of PHA synthesis occurred in
70 mM fructose-grown cells in the presence of 1 to 5 mM acrylic acid.
2-Bromooctanoic acid and 4-pentenoic acid were found to much inhibit
PHA synthesis much more strongly in fructose-grown cells than in
octanoate-grown cells over concentrations ranging from 1 to 5 mM.
However, 2-bromooctanoic acid and 4-pentenoic acid did not inhibit cell
growth at all in the fructose media. Especially, with the cells grown
on fructose, 2-bromooctanoic acid exhibited a steep rise in the percent
PHA synthesis inhibition over a small range of concentrations below 100 µM, a finding indicative of a very specific inhibition, whereas
4-pentenoic acid showed a broad, featureless concentration dependence,
suggesting a rather nonspecific inhibition. The apparent inhibition
constant Ki (the concentration for
50% inhibition of PHA synthesis) for 2-bromooctanoic acid was
determined to be 60 µM, assuming a single-site binding of the
inhibitor at a specific inhibition site. Thus, it seems likely that a
coenzyme A thioester derivative of 2-bromooctanoic acid specifically
inhibits an enzyme linking the two pathways, fatty acid de novo
synthesis and PHA synthesis. We suggest that 2-bromooctanoic acid can
substitute for the far more expensive (2,000 times) and
cell-growth-inhibiting PHA synthesis inhibitor, cerulenin.
 |
INTRODUCTION |
Polyhydroxyalkanoic acid (PHA) is
accumulated in bacterial cells from many types of carbon sources and it
can be used as energy source (3, 25) if the PHA is
degraded under certain conditions (10, 39). PHA
composition depends on the PHA synthases present, the carbon sources
and the route by which the supplied carbon sources are metabolized
(25). Medium-chain-length (MCL) PHA-producing bacteria
(specifically, the Pseudomonas spp. belonging to rRNA group
I) can be used for the production of PHA with functional groups, such
as phenyl, phenoxy, olefins, halogens, esters, etc. (25),
in its side chains. In particular, the incorporation of carbon-carbon
double (15, 22, 24, 27, 37) or triple (21)
bonds into the side chains of PHA may be important because a large
number of applications in pharmacology, agricultural science, etc., are
expected after some modification of the olefins by attaching biological
active molecules or cross-linking the multiple bonds by
-irradiation
(4), UV light (21), or epoxidation (5, 38). A usual preparation of the modifiable PHA requires a
cofeeding of expensive alkenoic acids or alkenes. The fatty acids
with more than six carbon atoms are degraded via the
-oxidation
pathway. Intermediates from the
-oxidation cycle can be converted to
(R)-3-hydroxyacyl-coenzyme A (CoA) by a hydratase,
epimerase, or reductase activity, and (R)-3-hydroxyacyl-CoA
is utilized as the substrate of the PHA synthase to polymerize them
(25). The introduction of functional groups in the side
chains is thus possible by using the fatty acids with the corresponding
functional groups as the substrates.
Another type of PHA with unsaturated carbon-carbon double bonds in the
side chains is produced by several MCL-PHA-producing bacteria such as
Pseudomonas citronellolis (9), P. aeruginosa, P. putida KT2442 (12, 18, 19, 20), and
Pseudomonas sp. strain NCIMB 40135 (16), grown
on unrelated carbon sources such as fructose, glucose, acetate,
butyrate, gluconate,
-diols,
-dicarboxylic acids, etc. The
unsaturated monomers identified thus far include 3-hydroxy-cis-5-dodecenoate (C12:1)
and 3-hydroxy-cis-7-tetradecenoate (C14:1), which usually constitute minor monomers
in the PHA in addition to the major constituents 3-hydroxyoctanoic acid
and 3-hydroxydecanoic acid (3HD) (9, 12, 18, 19, 20).
However, in most cases reported thus far, the overall contents of the
two unsaturated monomers were <10 mol%. These unsaturated monomers are known to derive from the intermediates of the fatty acid de novo
synthesis pathway (14, 17, 25). The intermediates are present in a form of acyl carrier protein (ACP). It was suggested that
the substrate of MCL-PHA synthase was (R)-3-hydroxyacyl-CoA in pseudomonads. Thus, to serve as a substrate for the PHA synthase, (R)-3-hydroxyacyl-ACP must be converted to the corresponding
CoA derivative. Recently, it was found that 3-hydroxyacyl-ACP:CoA transacylase phaG plays the role in linking the two
pathways, fatty acid synthesis and PHA synthesis (14, 17, 25,
31).
PHA synthesis-related inhibitors can be used to find the metabolic
pathway from which precursors for PHA synthesis (18) are
supplied, as well as to channel intermediates of a pathway specific to
PHA synthesis (14, 29). Only two inhibitors, acrylic acid
and cerulenin, have been applied in literature (14, 18, 29). Acrylic acid has been employed to study the relationship between the
-oxidation cycle and PHA synthesis. It is known to inhibit acyl-CoA synthase and 3-ketothiolase in gram-negative bacteria
(18, 29). It was reported that in a wild-type strain such
as P. putida KT2442, PHA accumulation from fatty acids could be inhibited in the presence of acrylic acid (18).
However, in recombinant strains such as Escherichia coli
(fadR) (29) and P. fragi
(14) harboring a PHA synthase gene, PHA accumulation was
enhanced or induced. Cerulenin has been used as an inhibitor for PHA
synthesis from saccharides because it inhibits fatty acid synthesis
(18, 28). However, cerulenin also inhibits cell growth
strongly at the same level of concentration as in PHA synthesis. Thus,
it was necessary to find a specific inhibitor to inhibit only PHA
synthesis and not cell growth. This could be very useful for an
efficient pathway routing for the preparation of a specially designed
PHA with the cells in active growth. In this study, a cheaper and more
potent inhibitor, 2-bromooctanoic acid, was found to very specifically
inhibit PHA synthesis of the bacterium from saccharides without any
influence on the cell growth. 4-Pentenoic acid was also found to
inhibit PHA synthesis, but it did so less specifically than
2-bromooctanoic acid.
We were interested in screening bacteria to produce PHA with high
levels of those unsaturated monomer units from cheaper carbon sources
such as saccharides. Recently, we successfully isolated a bacterial
strain that is capable of producing MCL-PHA containing the two
unsaturated monomers at up to 40 mol% from fructose. This characteristic strain was identified as a psychrotrophic P. fluorescens. For the three inhibitors, acrylic acid,
2-bromooctanoic acid, and 4-pentenoic acid, the inhibitory effect on
the PHA synthesis of the isolated bacterium was investigated over a
wide range of concentrations in order to systematically study the
relation between the precursor supplying routes and PHA formation in
the bacterium. In addition, several saccharides and monocarboxylic
acids including C2 (acetate) to
C18 (stearic acid) were tested for their
utilization by the bacterium to see what types of PHA are synthesized
in the psychrotrophic strain.
 |
MATERIALS AND METHODS |
Isolation and characterization of strain BM07.
The sample
obtained from activated sludge in a municipal wastewater treatment
plant in Chinju, Korea, was suspended with sterilized water and
inoculated to an M1 mineral salts medium (9) containing 0.05% ammonium sulfate and 1% octanoic acid. After 2 days of
incubation at 30°C and 200 rpm for 48 h, the culture was diluted
105 fold and 100 µl of the dilution was
inoculated onto octanoate M1 mineral agar plates and cultivated for
24 h at 30°C. Several single colonies were picked out
according to their opacity, usually caused by PHA synthesis in cells
(34), and then purified by a series of spreading steps
onto octanoate agar plates. The colony with the highest degree of
opacity and the largest size was picked out.
The isolated strain was characterized by using the API 20NE and ATB
ID-32-GN Identification System and identified as P. fluorescens (% identification [%ID] = 99.5). The strain was
named P. fluorescens BM07 and deposited in Korean Collection
for Type Cultures (strain no. KCTC 10005BP).
16S rRNA gene sequencing.
The strain was also identified by
using 16S rRNA gene sequence homology. Genomic DNA was obtained from
bacteria grown overnight at 30°C in 5 ml of Luria-Bertani medium. The
Marmur procedure (26) was employed for the isolation of
the genomic DNA.
The PCR mixture consisted of 1.0 µl of the genomic DNA template
solution; 10× PCR buffer; 50 ng each of two primers (forward,
5'-TATGGATCCTTCTACGGAGAGTTTGATCC-3'; reverse,
5'-TATGGATCCCACCTTCCGCTACGGCTACC-3')
(
11); 0.25 mM concentrations each of dATP, dCTP, dGTP, and dTTP;
and 2.5 U of
Taq polymerase in a final volume of 50 µl. Thermal
cycling
was undertaken by initially denaturing the DNA at 94°C
for 5 min,
followed by 50 cycles of 94°C for 1 min, 55°C for 1
min, and 72°C
for 1 min, with a final step at 72°C for 5 min.
The PCR products were
cloned into pGEM-T Easy vector (Promega,
Madison, Wis.).
A portion of the reaction mixture was used to visualize PCR products on
1% (wt/vol) agarose gels. PCR products in the remainder
of the
reaction mixture were purified using a QIAquick PCR purification
kit
(Qiagen, Ltd., Crawley, West Sussex, United Kingdom) and sequenced
by
using an ABI PRISM BigDye terminator cycle ready reaction kit
according
to the manufacturer's instructions (PE Applied Biosystems,
Warrington,
United Kingdom). Sequence data obtained were compared
with known 16S
ribosomal DNA (rDNA) sequences of
P. fluorescens strains
(accession no.
AF094726,
AJ278814,
AJ278813,
and
D84013) by using the
BLAST algorithm (
http://www.ncbi.nlm.nih.gov/BLAST/)
(
1).
Culture media and PHA accumulation in P.
fluorescens BM07.
Nutrient-rich (NR) medium was used in
the seeding, maintenance, and storage of the isolated strain and
contained 1% yeast extract, 1.5% nutrient broth, and 1% ammonium
sulfate. A modified M1 mineral salts medium of the same composition as
that reported earlier (9) was used as the PHA synthesis
medium. The culture (5 ml) grown in NR medium at 30°C at 180 rpm for
12 h was transferred to 500 ml of M1 mineral salts medium
containing an appropriate amount of a carbon source and 1.0 g of
ammonium sulfate/liter in a 2-liter flask and cultivated long enough to
grow maximally. The cells were then harvested, washed with methanol,
and dried under a vacuum at room temperature. In the cultivation with
insoluble substrates such as C14,
C16, and C18 carboxylic
acid as a carbon source, a two-phase slurry cultivation technique
reported earlier (35) was used for an efficient
cultivation of the strain.
The cell growth was monitored by turbidity measurements at 660 nm with
a Spectronic 20 spectrophotometer. The concentrations
of ammonium ion
remaining in the media were measured by using
the Nessler reagent
method. The concentration of fructose remaining
in the medium was
determined by using the 3,5-dinitrosalicylic
acid method. The
concentration of organic acid remaining in the
medium was measured by
reacting the chloroform extract of NaCl-saturated
medium with sulfuric
acid-methanol mixture, followed by gas chromatographic
(GC)
determination of the resultant methyl esters (
8,
34).
In
time course experiments, PHA formation was similarly followed
by
determining the content of PHA in cells by using the sulfuric
acid-methanol reaction mixture of the dried cells followed by
GC
determination of the resulting 3-hydroxymethyl esters. Gas
chromatograms were obtained on a Hewlett-Packard 5890A gas
chromatograph
equipped with an HP-1 column and a flame ionization
detector.
Polyester isolation and characterization.
Polyesters were
extracted from an appropriate amount of cells, which had been dried
overnight at 50°C under a vacuum, with hot chloroform in a Pyrex
Soxhlet apparatus for 6 h. After concentration, the solvent
extract was precipitated in rapidly stirred cold methanol. The isolated
polymers were dried overnight under a vacuum at ambient temperature and
then weighed. Quantitative determination of the monomer units in the
polymers was performed by GC as described above. The standardization of
each GC peak was made against the PHA of known structure characterized
by quantitative nuclear magnetic resonance (NMR) analyses (34,
35).
The
1H- and
1H-noise-decoupled
13C-NMR
analyses of the polyester samples were carried out on a Bruker-DRX 500 MHz spectrometer
in the pulse-Fourier transform mode. Thermal
transitions of the
polyesters were measured under a nitrogen purge by
using a TA
differential scanning calorimeter (DuPont 2100, DSC V4.0B)
equipped
with a data station. The heating rate was 20°C/min. The
scanning
range was between

100 and 200°C.
Transmission electron microscopy.
The washed cells were
doubly fixed with 2% glutaraldehyde and 1% osmium tetroxide.
Ultrathin sectioning was performed by using an LKB-Ultratome with a
diamond knife. These sections were then collected on a copper grid
coated with a Formvar-carbon film and were poststained with lead
citrate and uranyl acetate (34). Electron micrographs were
obtained with a Hitachi H-600 electron microscope (Tokyo, Japan) under
an acceleration voltage of 75 kV.
Inhibition of PHA synthesis and cell growth.
Among the
several compounds tested, the three compounds, acrylic acid,
2-bromooctanoic acid, and 4-pentenoic acid were found to be potent
inhibitors for PHA synthesis in P. fluorescens BM07. After
cultivation of the cells in NR medium at 30°C for 24 h, the
cells (2.79 g/liter in dry biomass) were transferred to a modified M1
PHA synthesis medium containing 70 mM fructose or 40 mM octanoate and
cultivated at 30°C for 48 h in the presence of an appropriate
amount of each inhibitor. The medium contained 1.0 g of ammonium
sulfate per liter. The NR medium-grown cells did not contain PHA.
Almost an equal amount of NR medium-grown cells (2.79 g/liter in dry
cell weight) was added to each culture medium containing a different
level of inhibitor. The content of PHA and its monomer composition were
measured by GC analysis of the inhibitor-treated cells. Minimum
triplicate experiments were carried out and statistically averaged. The
standard deviations for each determination were within 5%. Five
batches of noninhibitor cells were grown on 70 mM fructose and 40 mM
octanoate, respectively, since the control experiments for both carbon
sources and their biomasses were measured and averaged for each carbon
source. The average values were determined to be 5.281 and 3.665 g/liter for fructose- and octanoate-grown cells, respectively, and were
used as the control biomass in the calculation of the percent
inhibition. For the three inhibitors, no systematic and significant
change in the monomer ratio of the PHA recovered was observed compared to the PHA synthesized in the absence of inhibitor. Irrespective of the
level of each inhibitor, a maximum ± 3% (2-bromooctanoic acid)
to ± 7% (acrylic acid and 4-pentenoic acid) of nonsystematic GC
signal variation was observed for each GC peak. So, the calculation of
the percent inhibition was based on the change of the signal intensities of two strong GC peaks, C12:1 peak
for fructose-grown cells and 3-hydroxyoctanoate (3-HO) peak for
octanoate-grown cells.
The percent inhibition of PHA accumulation is defined as [(PHA
wt%)
control 
(PHA
wt%)
inhibitor]/(PHA
wt%)
control, where (PHA
wt%)
control is the weight percent (wt%)
of PHA in the control
dry biomass and (PHA
wt%)
inhibitor is the weight percent of PHA
accumulated in the presence of inhibitor. Similarly, the apparent
percent inhibition of cell growth is defined as [(g of PHA-free
dry
cell mass/liter)
control 
(g of PHA-free dry
cell mass/liter)
inhibitor]/(g
of PHA-free dry
cell mass/liter)
control, where (g of PHA-free
dry
cell mass)
control is the grams of PHA-free dry
cell mass per
liter in the absence of inhibitor, calculated by
subtracting the
weight of PHA from the weight of total averaged control
biomass,
and (g of PHA-free dry cell
mass/liter)
inhibitor is the grams
of PHA-free dry
cell mass per liter in the presence of inhibitor.
The determined
control value for the grams of PHA-free dry cell
mass/liter in the
absence of inhibitor was 4.273 and 3.098 g/liter
for fructose- and
octanoate-grown cells, respectively. The limiting
values corresponding
to the theoretically allowed maximum percent
inhibition of cell growth
were calculated to be 35 and 10% for
fructose- and octanoate-grown
cells, respectively, because the
(g of PHA-free dry cell
mass/liter)
inhibitor values cannot be
theoretically less than 2.79 g/liter, which was the amount of
NR-grown
cells equally added to each culture medium containing
a certain level
of inhibitor. Thus, the calculated apparent percent
inhibition
(virtually not normalized) of cell growth exceeding
the limiting value
was considered 100%
inhibition.
Assay of the inhibitors remaining in media.
2-Bromooctanoic
acid that remained in a culture medium was extracted with chloroform,
and the chloroform extract was reacted in a sulfuric acid-methanol
mixture. The methyl ester in the organic layer was analyzed by using
GC. The concentration of acrylic acid and 4-pentenoic acid that
remained in media was analyzed in a rather different way. Five
milliliters of the culture medium was saturated with magnesium sulfate,
and 0.5 ml of 2 M HCl was added to the saturated solution in order to
increase the efficiency of transfer of the remaining inhibitor into an
organic phase. After the mixture was vortex mixed, the free acid was
extracted by adding 2 ml of chloroform. The chloroform extract was
methanolized in a similar manner, and the resulting methyl ester was
analyzed by using a Hewlett-Packard 5890A gas chromatograph equipped
with a DB-WAXETR column (30 m by 0.53 mm by 0.25 µm; J&W Scientific, Folsom, Calif.). A typical GC run condition is as follows: initial temperature, 60°C for methylacrylate and 50°C for
methyl-4-pentenoate; initial time, 2 min; heating rate, 10°C/min; and
final temperature, 120°C. The methyl ester of acrylic acid and
4-pentenoic acid was eluted at retention times of 3.2 and 2.8 min,
respectively. The same treatment procedure was applied to the samples
for the standardization curves of the two inhibitors.
 |
RESULTS |
Characterization of the isolated strain.
Table
1 shows the morphological, biochemical,
and nutritional characteristics for the isolated strain. The strain has
three to five polar flagella, and it exhibited motility. The strain is
able to grow at 4°C. Activities of cytchrome oxidase and arginine dihydrolase were present. Denitrification was observed. Esculin was not
hydrolyzed, but gelatin was hydrolyzed. Glucose,
L-arabinose, and D-mannose were utilized for
growth. Phenylacetate was not utilized. Thus, from the test result
obtained by using the API identification program (ID-32-GN strip test)
in accordance with standard methods (23), the isolate was
identified as a strain of P. fluorescens (%ID = 99.5)
and named P. fluorescens BM07. The strain was also
identified by 16S rRNA gene sequence homology (98%) as P. fluorescens. An almost complete 16S rDNA sequence (1,469 nucleotides) was determined and compared with known 16S rDNA sequences.
Growth of the strain on a nutrient agar at 30°C led to the formation
of pulvinate colonies. Even though the agar plate was
stored in a 4°C
refrigerator, vigorous cell growth was observed.
The colony became
translucent, probably due to the slime formed
around the colony, with
the colony shape changed to a rather diffuse
convex form after storage
at 4°C. The growth characteristics at
4°C indicate that
P. fluorescens BM07 is a psychrotrophic
strain.
PHA synthesis from unrelated carbon sources.
Among the seven
saccharides tested, fructose was the best carbon source for both cell
growth and PHA production. The growth curve for the cells grown at
30°C on 70 mM fructose in a mineral salts medium containing 1.0 g of ammonium sulfate/liter (molar C/N ratio of ~10) is shown in Fig.
1. Cell growth and PHA accumulation occurred in a growth-associated fashion without any time lag. The dry
cell weight was 4 g/liter in a 500-ml batch culture. The yield of PHA
synthesis was 25% (wt/wt) dry cells.

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FIG. 1.
Time course profiles for growth-associated PHA synthesis
in P. fluorescens BM07 grown in PHA synthesis mineral
salts medium containing 70 mM fructose and 1.0 g of ammonium
sulfate/liter at 30°C. PHA formation was monitored by determining the
content of PHA in cells by using a sulfuric acid-methanol reaction
mixture and GC determination of the resulting 3-hydroxy-methylesters.
|
|
The PHA isolated from the cells grown with fructose at 25°C was
analyzed by using a 500-MHz
1H-NMR spectrometer
(Fig.
2). Detailed chemical-shift
assignments
for all of the carbons and protons were published elsewhere
(
12,
18). The four absorption peaks, designated g, h, j,
and k, appeared
at 5 to 6 ppm in the
1H-NMR
spectrum (Fig.
2A) and are ascribable to the protons attached
to the
two ethylene carbons (-CH==CH-) associated with the unsaturated
monomers, C
12:1 and C
14:1,
present in the PHA. A 125-MHz
13C-NMR spectrum
for the PHA revealed two pairs of resonances at
120 to 140 ppm
ascribable to the two ethylene carbons in C
12:1 and C
14:1 (Fig.
2B). The expanded spectrum for
the carbonyl band
region showed well-resolved doublet peaks at 169.32 and 169.20
ppm, respectively (Fig.
2B, inset). The stronger absorption
at
169.32 ppm was assigned to the carbonyls of the saturated 3-hydroxyl
monomers, whereas the weaker one at 169.20 ppm was ascribable
to those
of C
12:1 and C
14:1. The
methine carbon (oxygen-bound
-CH- group in the backbone) also showed
doublet absorptions at
70.81 and 70.43 ppm, respectively (Fig.
2B,
inset). One more doublet
occurred at 39.49 and 38.83 ppm, associated
with the methylene
carbon (-CH
2-) in the backbone
chain (visible in the expanded
spectrum [not shown]). For all of the
three doublet peaks, the
downfield peaks are associated with the
saturated monomer units
and the upfield ones due to the unsaturated
monomer units. Thus,
from the peak area ratios of the doublets, the
relative amounts
of total unsaturated monomers in PHA can be
calculated. The percentages
of unsaturated monomer units calculated for
each doublet to the
carbonyl, methine, and backbone methylene
were 38.1, 38.8, and
36.0, respectively. The GC-determined mol% of
unsaturated monomers
in the same PHA sample was 36.8, showing almost
the same value
as that determined by the
13C-NMR
peak area ratio method described above.

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FIG. 2.
500 MHz 1H-NMR spectrum (A) and 125 MHz
13C-NMR spectrum (B) of PHA synthesized by P.
fluorescens BM07 cells grown on 70 mM fructose at 25°C. For
the inserted doublet peaks (B), the downfield peaks are associated with
saturated monomer units and the upfield ones are due to unsaturated
monomer units (C12:1, C14:1, etc.). Thus, from
the peak area ratios of the doublets, the relative amount of total
unsaturated monomers in PHA can be calculated. The calculated
percentage of unsaturated monomer units was 38%, a result that agreed
well with the percentage determined by GC (37%). See the text for
details.
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|
GC analysis showed that the PHA synthesized at 30°C from fructose or
succinate was principally composed of 36 mol% 3HD and
30 mol%
C
12:1. The third major monomer was
3-hydroxydodecanoic
acid (3HDD), which is a reduced form of
C
12:1. The longer monomers
C
16:1 and 3-hydroxyhexadecanoic acid (3HHD) were
also detected
as minor monomers in the PHA from succinate-grown
cells.
PHA synthesis from monocarboxylic acids.
The lower aliphatic
acids (acetic, propionic, butyric, valeric, and capric acids) supported
only cell growth and not PHA accumulation. The dry cell mass was ca. 2 g/liter for the five carbon sources. For the longer carbon sources,
heptanoic acid (C7) to hexadecanoic acid
(C16), the monomer composition of PHA depends on
the length of substrate molecules (Table
2), similar to what is observed in other
pseudomonads belonging to rRNA homology group I (23). For the three carbon sources, C7,
C8, and C9 acids, the
monomer unit that has the same number of carbon atoms as the carbon
source used was a major constituent in the PHA produced. Decanoic acid (C10)-grown cells produced the PHA whose major
monomer was 3HO, shorter than the substrate by one ethylene unit. For
the carboxylic acids longer than C10, 3HO and 3HD
almost equally constituted major monomers. In the PHA from the cells
grown on C10 to C16, the
longer monomer 3HDD was incorporated into the polymer at a significant
level (17 to 23 mol%). In the cells grown with
C14 and C16, the relatively
long 3-hydroxyacid monomers, 3-hydroxytetradecanoic acid and 3HHD, were
also polymerized without being degraded via
-oxidation. The
incorporation levels were 7 and 5 mol% for 3-hydroxytetradecanoic acid
and 3HHD, respectively. It seems highly probable that P. fluorescens BM07 could incorporate the monomer with a protected reactive endgroup attached to its terminal into the polymer chain without being modified; the resulting PHA could be used for the production of functional PHA.
Stearic acid (C
18) was also tested for PHA
production (Table
2). The chloroform extract of the stearic acid-grown
cells was
reacted in a sulfuric acid-methanol mixture. The resultant
methyl
esters were analyzed by using GC. Only one major peak appeared
at the retention time when the methyl ester of stearic acid itself
was
detected. No other peaks ascribable to the expected monomers
of PHA
were observed. Differential scanning calorimetric (DSC)
analysis
revealed that the dried solid powder recovered from the
chloroform
extract melted at 69°C (the melting point of pure stearic
acid),
confirming the presence of stearic acid transported into
the cells.
Stearic acid is insoluble in water. Therefore, as described
in
Materials and Methods, the bacterium was cultivated in an emulsive
solid stearic acid-liquid slurry medium. It seemed that stearic
acid
adhered to the cell surface, contributing to the extractable
component.
However, an ethanol washing of the cells resulted in
the same result as
for the unwashed cells. It was concluded that
stearic acid supported
only cell growth, and the transported stearic
acid was stored in cells
without being chemically
modified.
The amount of stearic acid stored in cells was 5% (wt/wt) in dry
cells. It was previously reported that crystallizable bacterial
inclusions respond to a heating in a DSC cell, exhibiting a melt
transition (
36). To investigate a possible existence of
free
stearic acid inclusions, DSC analysis was performed against the
dried stearic acid-grown cells. However, no melt transition was
observed for the cells, which means that stearic acid may exist
in a
noncrystallizable form or may be localized near the membrane.
For
further characterization about the localization of stearic
acid in the
cell, electron microscopic photographs were taken
for the cells grown
on palmitic acid (control) and stearic acid
(Fig.
3). The palmitate-grown cells clearly
demonstrated the presence
of large PHA inclusion granules, but the
1-ethylene-unit-longer
stearic acid-grown cells revealed tiny
electron-transparent inclusions.
The electron-dense spots in the two
photographs may represent
polyphosphate granules (
2).
However, considering the amount
of stearic acid in cells, it is likely
that the tiny inclusions
represent stearic acid granules. The absence
of any melt transition
for the dried stearic acid-grown cells suggests
that the related
granules are impure, probably mixed with other
lipid-like molecules.
At any rate, from the physiological point of
view, it is interesting
that
P. fluorescens BM07 utilizes an
economical energy storage
method without resorting to the PHA synthesis
metabolism.

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FIG. 3.
Electron microscopic photographs of PHA inclusion
granules in P. fluorescens BM07 cells cultivated with
C16 (palmitic acid) (top panel) for 50 h and
C18 (stearic acid) (bottom panel) for 82 h at 30°C.
The palmitate-grown cells contained 27% (wt/wt) of dry cells of PHA.
The palmitate-grown cells clearly showed the presence of large PHA
inclusion granules. However, the stearic acid-grown cells revealed tiny
electron-transparent inclusions. The tiny inclusions are considered to
probably represent the granules containing free stearic acid (5%
[wt/wt] dry cells).
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|
We do not know why the bacterium is unable to synthesize PHA from
stearic acid. For the growth of the cells on stearic acid,
first of
all, stearic acid should be degraded via the

-oxidation
pathway,
resulting in metabolites with fewer carbon atoms
(C
16,
C
14, etc.). These
shortened metabolites could be precursors of
PHA. However, it was found
that no PHA was formed at all throughout
the growth when the cells were
grown on 3.4 g of stearic acid/liter
for 95 h (data not
shown). The growth on stearic acid required
at least 36 h of
induction period and reached a plateau steady-state
region (2.5 g of
dry biomass/liter) after 80 h. The accumulation
of free stearic
acid in cells continued steadily until 64 h, finally
reaching
4.5% (wt/wt) of dry cells equivalent to 3.2% of the initial
stearic acid. From these data, it can only be speculated now
that
the stearyl-CoA or one of its C
18
derivatives acts as an inhibitor
for one of the enzymes related to PHA
synthesis. Further detailed
molecular level study on this
substrate-carbon-length-dependent
PHA synthesis is under
way.
Thermal properties of PHA.
Table 2 also shows thermal
transition data for PHA synthesized in P. fluorescens BM07.
The precipitated and dried polymer samples were fully crystallized at
an ambient temperature. The PHA prepared from fructose had a lower
glass transition temperature (Tg) than
that from octanoic acid by 17°C. It did not exhibit a melt
transition ca. 50°C, whereas the PHA from carboxylic acid-grown cells
did. The absence of the melt may be caused by the cis-type olefinic bonds in the side chains (e.g., C12:1
and C14:1 monomers) perturbing side chain packing
for crystallization (27). These planar olefin bonds,
however, may contribute to a lowering of Tg, resulting from an increased side
chain mobility. A small endothermic peak observed at 0°C for the
first-run sample of the PHA from fructose-grown cells appeared again
during the reheating process after the first run scanned up to 150°C.
Thus, the melting peak at 0°C may be ascribed to a structural
characteristic of the PHA and not to an artifact. The polyesters
prepared from C14 and C16 substrates have a higher percentage of longer monomers, 3HD and 3HDD
(total, 50 mol%), than that from octanoic acid. However, the melting
point of the longer side chain PHA is not significantly different from
that of the 3-HO-dominant PHA, which means that the uniformity of side
chain length may not be a principal factor in determining the
crystallinity of MCL PHA.
Inhibition of PHA synthesis and cell growth by inhibitors.
The
dependence of inhibitor concentration on PHA synthesis and cell growth
was investigated for all three inhibitors: acrylic acid,
2-bromooctanoic acid, and 4-pentenoic acid (Fig.
4, 5, and 6). The addition of an inhibitor to a
cell growth medium could affect the growth and PHA accumulation
kinetics of P. fluorescens BM07. Therefore, in order to
compare the inhibitory effects of the three inhibitors in terms of
strength and specificity, it is essential to determine the sampling
time for each culture exhibiting a steady-state maximum cell growth and
PHA synthesis in the presence of inhibitor. As shown in Fig. 1, the
increasing patterns of the time course profiles of optical density
(OD), cell yield, and PHA content are in parallel with one another.
Furthermore, it was reported that an increase in PHA content linearly
and significantly increased the OD of a nitrogen-free culture medium in
which R. eutropha H16 was grown (33). Thus, a
steady-state plateau OD value must be attributed to both maximal cell
growth and PHA accumulation. Thus, we investigated the time courses for
the growth of NR medium-grown cells on fructose in the presence of 5 mM
acrylic acid, 1 mM 2-bromooctanoic acid, or 3 mM 4-pentenoic acid and
on octanoate in the presence of 3 mM acrylic acid, 3 mM 2-bromooctanoic
acid, or 3 mM 4-pentenoic acid (data not shown). For fructose-grown
cells, none of the three inhibitors shifted the time to reach the
plateau OD compared to the control growth experiment without inhibitor
(the four OD profiles almost exactly overlapped one another). For
octanoate-grown cells, the OD profiles for the three inhibitor-treated
cells were shifted by 10 h compared to the inhibitor-free control
experiment, due to the almost equally increased induction periods.
However, the time leading to the plateau OD was in a similar range 45 to 50 h. Thus, both the maximal cell growth and PHA synthesis were
considered to occur within 42 to 48 h of cultivation for all
experiments. Therefore, the sampling was made after 48 h of
cultivation for all inhibition experiments.

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FIG. 4.
Inhibition of PHA synthesis ( ) and cell growth ( )
by acrylic acid when P. fluorescens BM07 was grown on 40 mM octanoic acid (open symbols) or 70 mM fructose (solid symbols) at
30°C. NR medium-grown cells were transferred to PHA synthesis medium
containing the indicated level of acrylic acid and were grown for
48 h. Cell growth was determined by measuring the dry cell weight
(DCW). The calculation of the percent inhibition of PHA synthesis was
based on the change of the signal intensities of two strong GC peaks, a
C12:1 peak for fructose-grown cells and a 3-HO peak for
octanoate-grown cells. Minimum triplicate experiments were carried out
and statistically averaged. The percent inhibitions for PHA
accumulation and cell growth are defined in Materials and Methods. The
limiting value corresponding to the theoretically allowed maximum
percent inhibition of cell growth was calculated to be 35% for
fructose-grown ( · · · ) and 10% for
octanoate-grown ( · · · · · · · · ) cells. Thus, the calculated apparent
percent inhibition (virtually not normalized) of cell growth exceeding
the limiting value was considered to be 100% inhibition of cell
growth.
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FIG. 5.
Inhibition of PHA synthesis ( ) and cell growth ( )
by 2-bromooctanoic acid when P. fluorescens BM07 was
grown on 40 mM octanoic (open symbols) acid or 70 mM fructose (solid
symbols). The limiting value corresponding to the theoretically allowed
maximum percent inhibition of cell growth was calculated to be 35%
for fructose-grown ( · · · ) and
10% for octanoate-grown ( · · · · · · · · ) cells. Thus, the calculated
apparent percent inhibition (virtually not normalized) of cell growth
exceeding the limiting value was considered to be 100% inhibition of
cell growth. See the legend in Fig. 4 for the other details.
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FIG. 6.
Inhibition of PHA synthesis ( ) and cell growth ( )
by 4-pentenoic acid when P. fluorescens BM07 was grown
on 40 mM octanoic acid (open symbols) or 70 mM fructose (solid
symbols). The limiting value corresponding to the theoretically allowed
maximum percent inhibition of cell growth was calculated to be 35% for
fructose-grown ( · · · ) and 10% for
octanoate-grown ( · · · · · · · · ) cells. Thus, the calculated apparent
percent inhibition (virtually not normalized) of cell growth exceeding
the limiting value was considered to be 100% inhibition of cell
growth. See the legend in Fig. 4 for the other details.
|
|
Acrylic acid completely inhibited PHA accumulation at 3.5 mM or higher
concentrations in cell suspensions containing 40 mM
octanoic acid as
the sole substrate (Fig.
4). The inhibiting level
of acrylic acid is
similar to that reported for
P. putida KT2442
(
18). The calculated apparent percent inhibition of cell
growth
exceeded the limiting value of 10% at ca. 1.5 mM acrylic acid,
where the limiting value for octanoate-grown cells is a theoretically
allowed maximum value calculated from [(3.098 g of PHA-free dry
cell
mass/liter)
control 
(g of PHA-free dry cell
mass/liter)
inhibitor]/(3.098
g of PHA-free dry
cell mass/liter)
control as defined in Materials
and Methods. The value of (grams of PHA-free dry cell
mass/liter)
inhibitor cannot be theoretically less
than 2.79 g/liter because it was
the amount of NR medium-grown cells
equally added to each culture
medium containing a certain level of
inhibitor. Thus, in the case
of octanoate-grown cells, the limiting
value was calculated to
be [(3.098

2.79)/3.098] × 100 = 10%. The calculated percent
inhibition higher than the limiting value
10% therefore means
that cell growth was completely inhibited at
concentrations of
acrylic acid exhibiting a percent inhibition of
>10% (e.g., 1.5
mM or higher). The gradual, significant increase in
the apparent
percent inhibition over the limiting value at the
concentrations
of acrylic acid higher than 2.5 mM was considered mostly
due to
a remarkable cell lysis causing a large cell loss during
recovery.
At any rate, complete inhibition of PHA synthesis and cell
growth
occurred at 3.5 and 1.5 mM acrylic acid, respectively, when the
cells were grown on octanoic acid. This indicates that, at acrylic
acid
concentrations between 1.5 and 3.5 mM, PHA synthesis was
still
occurring, whereas cell growth stopped. However, for the
cells grown
with 70 mM fructose, 10% or less inhibition of PHA
synthesis and
negligible cell growth inhibition compared to the
limiting value of
35% (calculated similarly for octanoate grown
cells described above)
were observed irrespective of the acrylic
acid concentration. This
indicates that acrylic acid had little
effect on the catabolism of
fructose and the consequent cell growth
and PHA accumulation. Thus, the
PHA synthesis in the bacterium
from fructose does not occur via the

-oxidation pathway, whereas
the PHA synthesis from octanoic acid
strictly occurs via the

-oxidation
pathway (
18,
25).
Figure
5 shows that 2-bromooctanoic acid strongly inhibited
PHA-synthesis in
P. fluorescens BM07 cells incubated on 70 mM
fructose. It exhibited a steep rise in the percent inhibition
of PHA
synthesis over a small range of concentration below 100
µM. The
inhibition profile takes the shape of a hyperbolic curve
with a high
curvature. The
Ki value was calculated to
be 60 µM,
assuming a single-site binding of the inhibitor at a
specific
inhibition site. The complete inhibition occurred at 2 mM or
higher.
However, 2-bromooctanoic acid negligibly inhibited cell growth
over the concentration range studied. This means that 2-bromooctanoic
acid specifically inhibits PHA synthesis from fructose, but the
supplying route of acetyl-CoA for cell growth is never inhibited.
For
the cells grown on 40 mM octanoic acid, an increase in the
concentration of 2-bromooctanoic acid also increased the percent
inhibition of PHA synthesis but led to only a maximum 20% inhibition
at 4 mM as shown in Fig.
5. However, for octanoate-grown cells,
the
apparent percent inhibition of cell growth was calculated
to exceed the
limiting value of 10% (the theoretically maximum
allowed inhibition)
at 1.5 mM 2-bromooctanoate. This means that,
when the cells are grown
on octanoate in the presence of

1.5
mM 2-bromooctanoic acid, cell
growth was completely inhibited,
whereas PHA synthesis was still
occurring. All these results suggest
that 2-bromooctanoate acts as a
weak inhibitor for the

-oxidation
enzyme(s), whereas it acts as a
strong inhibitor for the enzyme(s)
involved in the pathway leading to
PHA synthesis from
fructose.
4-Pentenoic acid almost completely inhibited PHA accumulation in cell
suspensions containing fructose as the substrate at
the concentration
of 4.5 mM or higher (Fig.
6). At lower concentrations,
it showed a
severely depressed concentration dependence of inhibition
compared to
2-bromomooctanoic acid. However, similar to findings
observed with
2-bromooctanoic acid, 4-pentenoic acid did not substantially
inhibit cell growth over the concentration range of 1 to 5 mM.
In the
case of cell suspensions containing octanoic acid, 4-pentenoic
acid
exhibited only a maximum of 20% inhibition of PHA synthesis,
a result
similar to that for 2-bromooctanoic acid. When the level
of 4-pentenoic
acid was increased to 5 mM, the apparent percent
inhibition of cell
growth was calculated to be 30%, far exceeding
the threshold value
10% described above. This high apparent percent
inhibition of cell
growth over the limiting value can be explained
in the same way as
described above for acrylic acid and 2-bromooctanoic
acid. At any rate,
it is thought that, when grown on octanoic
acid, 4-pentenoate almost
completely inhibited cell growth over
the concentration range tested (1 to 5 mM). Thus, both 2-bromooctanoic
acid and 4-pentenoic acid have
significantly different characteristics
in the inhibition of PHA
synthesis in
P. fluorescens BM07 grown
on fructose, a
finding indicative of totally different inhibition
mechanisms.
Metabolism of three inhibitors in PHA synthesis medium.
Analysis of the metabolic fates of the three inhibitors must be helpful
for understanding the above inhibition profiles in terms of their
specificities. Thus, the catabolism of the three inhibitors in P. fluorescens BM07 was investigated (Table
3). NR medium-grown cells were cultured
in PHA synthesis medium with an appropriate level of an inhibitor. The
medium contained 70 mM fructose or 40 mM octanoate as a carbon source
and 1 g of ammonium sulfate/liter. The inhibitor remaining in
medium was analyzed by GC. When added at millimolar concentrations,
both acrylic acid and 4-pentenoic acid completely disappeared after
48 h of cultivation. On the contrary, 2-bromooctanoic acid was
catabolized very little in both fructose and octanoic acid medium. In
addition, the disappearance of 2-bromooctanoic acid is a function of
the initial fed concentration, a result strongly suggestive of highly
specific inhibition by one of its metabolites. However, none of the
three inhibitors were utilized by P. fluorescens BM07 when
they were fed as a sole carbon source at millimolar levels (1 to 5 mM).
Acrylic acid is known to be metabolized to CO2
and acetyl-CoA via a secondary pathway of propionic acid catabolism in
mouse tissues (6). Thus, 3-hydroxypropionic acid could be
a probable inhibitor. However, 3-hydroxypropionic acid did not affect
PHA accumulation from both octanoic acid and fructose at the level of 5 mM. Its ineffectiveness may be due to no transportation of the molecule
into the cell because P. fluorescens BM07 did not grow on 40 mM 3-hydroxypropionic acid as a sole carbon source.
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TABLE 3.
Catabolism of three inhibitors, acrylic acid,
2-bromooctanoic acid, and 4-pentenoic acid, after 48 h of
second-step cultivation at 30°C
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|
 |
DISCUSSION |
High production of unsaturated 3-hydroxy acids from
saccharides.
As far as we know, this is the first report of a
bacterial strain capable of producing such a high amount of the
unsaturated monomers 3-hydroxy-cis-5-dodecenoate
(C12:1) and
3-hydroxy-cis-7-tetradecenoate (C14:1)
from unrelated carbon sources such as saccharides. Hence, it is
suggested that this strain can be used as a producer of the two
unsaturated fatty acids, which presumably are useful for pharmaceutical
applications, from cheap saccharides. We do not know at present why the
bacterium produces such high levels of these unsaturated 3-hydroxy
acids from saccharides. However, in light of the good growth at 5°C,
the high level of production of the unsaturated 3-hydroxy acids may be
related to a means for survival in cold environments. This idea was
supported by our preliminary experimental finding that a lowering of
the cultivation temperature led to an increase in the level of
unsaturated derivatives in PHA, as well as in membrane lipids (data not shown).
Acrylic acid and 4-pentenoic acid are multiple-site PHA synthesis
inhibitors.
The three inhibitors exhibited different inhibitor
concentration dependencies on PHA synthesis. This may imply that their curve shapes strongly reflect their catabolism behavior. In particular, the inhibition curves for acrylic acid and 4-pentenoic acid indicate a
probable existence of multiple-site inhibition by one inhibitory species or more than one different species with different
Ki values. As shown in Table 3, acrylic
acid and 4-pentenoic acid were completely catabolized after 48 h
of cultivation. Thus, it is probable that two or more metabolites
contribute to their inhibition. Acrylic acid is known to be metabolized
to CO2 and acetyl-CoA via a catabolic pathway of
propionic acid in mouse tissues (6). However, since a
probable intermediate 3-hydroxypropionic acid was found to be unable to
inhibit PHA synthesis, we propose one other intermediate species may
inhibit two different enzymes. Thus, the sigmoidal shape of the percent
PHA synthesis inhibition curve for acrylic acid (Fig. 4) suggests that
acrylic acid, probably in the form of CoA, has at least two target
enzymes for inhibiting both PHA accumulation and cell growth. Acrylic
acid is known to inhibit the 3-ketoacyl-CoA thiolase, which catalyzes
the final step of
-oxidation, i.e., the release of acetyl-CoA from
3-ketoacyl-CoA (18). It is also known to inhibit acyl-CoA
synthase (18). Such sigmoidal inhibition may indicate a
dual inhibition for two different enzymes with different
Ki values by acrylic acid. However, in
recombinant strains such as E. coli (fadR),
acrylic acid was not significantly catabolized (29).
Compared to the case of acrylic acid, 4-pentenoic acid showed no such
characteristic concentration dependence on PHA synthesis from fructose
but rather demonstrated a featureless dependence. 4-Pentenoic acid is
known to be metabolized to 2,4-pentadienyl-CoA, 3-keto-4-pentenoyl-CoA,
etc. 3-Keto-4-pentenoyl-CoA acts both as a reversible and as an
irreversible inhibitor of the 3-ketoacyl-CoA thiolase in rat heart
mitochondria (32). 3-Keto-4-pentenoyl-CoA is known as a
rather unspecific inhibitor because it inhibits other enzymes such as
carnitine acetyltransferase and acetoacetyl-CoA thiolase. (7,
40). The monotonously increasing and broad featureless
inhibition curve may thus indicate the presence of at least two or more
enzymes interacting with the intermediates derived from 4-pentenoic acid.
4-Pentenoic acid and 2-bromooctanoic acid inhibit the enzyme(s)
linking the two pathways, fatty acid synthesis and PHA synthesis.
The addition of 4 to 5 mM acrylic acid to fructose medium caused little
effect on PHA synthesis and cell growth, but its addition to octanoic
acid medium completely inhibited both PHA synthesis and cell growth.
This means that most CoA monomers necessary for PHA synthesis in
fructose-grown cells may be directly supplied via the route linking
fatty acid synthesis and PHA synthesis. It is recently known that the
enzyme (R)-3-hydroxylacyl-ACP-CoA transferase converting
(R)-3-hydroxylacyl-ACP to (R)-3-hydroxylacyl-CoA plays the role in linking the two pathways (14, 17, 31). 4-Pentenoic acid is known to be a
-oxidation inhibitor in animal cells, as described previously. However, 4-pentenoic acid inhibited PHA
synthesis strongly in fructose-grown P. fluorescens BM07
cells but only weakly in octanoate-grown cells. This indicates that one
of the derived intermediates may act as a strong inhibitor for the
enzyme involved in the linkage between fatty acid synthesis and PHA synthesis.
Compared to 4-pentenoic acid, 2-bromooctanoic acid more strongly and
more specifically inhibited PHA synthesis in fructose-grown
cells at
micromolar concentrations in the hundreds. However, like
4-pentenoic
acid, 2-bromooctanoic acid had little effect on cell
growth. This means
that the carbon flow for cell growth in fructose
medium is not blocked
by 2-bromooctanoic acid. This very specific
PHA synthesis inhibition
strongly suggests that an inhibitor molecule
derived from
2-bromooctanoic acid specifically targets the enzyme
bridging the two
pathways, PHA synthesis and fatty acid synthesis,
essential for cell
growth. The relatively small effect of 2-bromooctanoic
acid on PHA
synthesis from octanoic acid implies that the enzyme(s)
in the

-oxidation pathway is affected very weakly. Little inhibition
of
cell growth in fructose medium by 2-bromooctanoic acid implies
that the
enzymes in the fatty acid de novo synthesis pathway are
not target
enzymes. 2-Bromooctanoic acid is converted to 2-bromooctanoyl-CoA
and
2-bromo-3-ketooctanoyl-CoA in rat liver mitochondria (
30).
However, 2-bromo-3-ketooctanoyl-CoA is the specific inhibitor
for the

-oxidation enzyme 3-ketothiolase I (acyl-CoA-acetyl-CoA
C-acyltransferase). The fed concentration-dependent and
insignificant
decrease in the concentration of 2-bromooctanoate during
cultivation
(Table
3) suggests that one of the two CoA intermediates
acts
as an inhibitor against the bridging enzyme in
P. fluorescens BM07 without further catabolism of the 3-keto-CoA.
Especially,
in fructose-grown cells, an increase in the level of
2-bromooctanoic
acid resulted in a drastic decrease in the percentage
of the inhibitor
catabolized. Since the number of cells (approximated
as the PHA-free
dry cell mass) grown with fructose was relatively
constant in
spite of the increase in the inhibitor level as seen in
Fig.
5,
the fed concentration-dependent metabolism of
2-bromooctanoic
acid may reflect a constant number of the inhibitor
molecules
converted in the cell. This may additionally account for the
high
specificity of the probable species against the target
enzyme.
Both ACP and CoA have a common prosthetic group, phosphopantetheine, to
which acyl moieties are bound (
13). An acyl-ACP-CoA
transferase may have a conformationally flexible binding motif
into
which acyl-ACP and acyl-CoA could be fitted in a stepwise
manner. The
inhibiting CoA-type molecule derived from 2-bromooctanoic-acid
(e.g.,
2-bromo-3-ketooctanoyl-CoA) could be fitted into the binding
cleft.
The target enzyme of the inhibiting species could thus
be
(
R)-3-hydroxylacyl-ACP-CoA transferase. Further genetic and
enzymatic studies are under way to elucidate this in more detail.
In
any case, it can be concluded that a derivative from 2-bromooctanoic
acid specifically inhibits a key enzyme involved in the supplying
route
of PHA monomer precursors generated via the fatty acid synthesis
pathway.
2-Bromooctanoic acid is more potent and specific than
cerulenin.
Cerulenin inhibits the growth of P. putida
KT2442 at 1.34 mM (18). It binds to the active sites of
keto-acyl-ACP synthases I and II in the fatty acid synthesis pathway.
In glucose-grown cells cerulenin completely inhibited PHA synthesis.
Cerulenin also inhibited PHA synthesis by up to 69% in the cells grown
on 10 mM octanoate. However, both 4-pentenoic acid and 2-bromooctanoic acid inhibited PHA synthesis by only ~20% in P. fluorescens BM07 grown on octanoic acid. Thus, 2-bromooctanoic
acid may inhibit PHA synthesis more specifically than cerulenin. It is
therefore suggested that 2-bromooctanoic acid can substitute for the
more expensive (2,000 times) and less-specific (cell growth-inhibiting) inhibitor, cerulenin, in the inhibitor study of PHA synthesis.
 |
ACKNOWLEDGMENTS |
S.C.Y. acknowledges the financial support of the Korea Research
Foundation (KRF) made in the program years 1997 and 2000 (KRF-2000-0157DS0038). H.-J.L. was supported by a graduate scholarship
through the BK21 program to KRF. M.H.C. acknowledges a
postdoctoral fellowship provided through the BK21 program to KRF.
We thank the reviewers for helpful suggestions.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Biomaterials
Science Laboratory, Division of Life Science, Gyeongsang National
University, Gazwa-Dong 900, Chinju 660-701, Korea. Phone:
82-55-751-5942. Fax: 82-55-759-0187. E-mail:
scyoon{at}nongae.gsnu.ac.kr.
 |
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Applied and Environmental Microbiology, November 2001, p. 4963-4974, Vol. 67, No. 11
0099-2240/01/$04.00+0 DOI: 10.1128/AEM.67.11.4963-4974.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
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