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Applied and Environmental Microbiology, November 2001, p. 5331-5334, Vol. 67, No. 11
Departamento de Química
Biológica, Facultad de Ciencias Exactas y Naturales, Universidad
de Buenos Aires, Buenos Aires, Argentina,1
and Institut für Mikrobiologie, Westfälische
Wilhems-Universität Münster, D-48149 Münster,
Germany2
Received 13 June 2001/Accepted 1 September 2001
Genes responsible for the synthesis of poly(3-hydroxybutyrate)
(PHB) in Azotobacter sp. FA8 were cloned and analyzed. A
PHB polymerase gene (phbC) was found downstream from
genes coding for Polyhydroxyalkanoates (PHAs) are a
group of polyesters produced by a large number of bacteria, which
accumulate them in intracellular granules as a response to
environmental stress and nutrient imbalance (2, 7). These
thermoplastic polymers have drawn great interest since their discovery
due to their degradability and the potential to produce them from
renewable carbon sources. Azotobacter sp. FA8 is an aerobic,
nitrogen-fixing bacterium that accumulates poly(3-hydroxybutyrate)
(PHB) when cultivated on several carbon sources, including sucrose
(13). Although the capacity of Azotobacter strains to accumulate PHAs is well known (2, 9), except for a recently described Cloning and molecular analysis of the PHB synthase gene from
Azotobacter sp. FA8.
Genomic DNA of
Azotobacter sp. FA8 was partially digested with
XhoI and ligated to the mobilizable cosmid pVK102
(5) digested with the same enzyme and dephosphorylated.
The resulting ligation mixture was packaged using an in vitro packaging
system (Stratagene, La Jolla, Calif.) and used to transfect
Escherichia coli S17-1, a strain that contains the
tra genes of plasmid RP4 integrated into the chromosome
(19). Transductants were selected on Luria-Bertani plates
containing 10 µg of tetracycline/ml. The library was screened for the
presence of the PHB synthase (phbC) gene by complementation analysis. Ralstonia eutropha PHB-4 (17), a
phbC mutant, was used as recipient. The complementation was
carried out on a mineral salts medium (16) containing
1.5% (wt/vol) agar, 0.05% (wt/vol) NH4Cl, 0.5%
(wt/vol) fructose, and 5 µg of tetracycline/ml. One of the E. coli clones, C1, gave rise to opaque, PHB-producing transconjugants. The polymer produced by the recombinant was extracted from lyophilized cells with hot chloroform and ethanol precipitated, and the methyl ester derivatives were analyzed by gas chromatography (1) using a Gow Mac Series 580 gas chromatograph
(Bridgewater, N.J.) equipped with a flame ionization detector and a
packing column of Carbowax 20 M-TPA-Chromosorb W-AW (SUPELCO,
Bellefonte, Pa.). The polymer obtained was found to be a homopolymer of
3-hydroxybutyrate.
0099-2240/01/$04.00+0 DOI: 10.1128/AEM.67.11.5331-5334.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Poly(3-Hydroxybutyrate) Synthesis Genes in
Azotobacter sp. Strain FA8

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ABSTRACT
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Abstract
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References
-ketothiolase (phbA) and
acetoacetyl-coenzyme A reductase (phbB). A PHB synthase
mutant was obtained by gene inactivation and used for genetic studies.
The phbC gene from this strain was introduced into
Ralstonia eutropha PHB-4 (phbC-negative
mutant), and the recombinant accumulated PHB when either glucose or
octanoate was used as a source of carbon, indicating that this PHB
synthase cannot incorporate medium-chain-length hydroxyalkanoates into PHB.
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TEXT
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Abstract
Text
References
-ketothiolase from Azotobacter
vinelandii (18), the genes responsible for their
synthesis have not yet been identified. In this paper we report the
identification, cloning, and molecular analysis of the phb
gene cluster of Azotobacter sp. FA8.
TABLE 1.
Recombinant plasmids used in this work
-ketoacyl-coenzyme A (CoA) thiolase genes.
Cloning of the
-ketoacyl-CoA thiolase and acetoacetyl-CoA
reductase genes from Azotobacter sp. strain FA8.
In
order to clone the rest of ORF2, presumably the Azotobacter
sp. FA8
-ketoacyl-CoA thiolase (phbA) gene, primers were
designed from the conserved sequences corresponding to the
amino-terminal region of several
-ketoacyl-CoA thiolase genes
available in the databanks and used together with C1 (5' GAC ATT
GAT CCT GAA AAG CG 3'), a primer corresponding to the region
immediately upstream from the phbC gene from
Azotobacter sp. FA8 (Fig. 1),
but no amplification fragment was obtained. pha genes are
normally organized in clusters (7). phb genes
were not found downstream of phbC, and we hypothesized that
the acetoacetyl-CoA reductase gene (phbB) might be upstream from ORF2. Based on this hypothesis, several primers were designed from
conserved regions of phbB genes. The following primers were used to obtain a 1,500-bp amplification fragment: R1 [5' GCN
GA(C/T) TT(G/T) (A/T)(G/C)N (G/T/C)TN AA(C/T) GGN GG 3'], a
degenerate primer corresponding to the conserved carboxy-terminal
region of available phbB genes, and C1, described above. The
1,500-bp amplification fragment was cloned into vector pGemT-Easy
(Promega, Madison, Wis.) and sequenced as indicated previously. The
analysis of its sequence revealed the presence of a 1,176-bp ORF (ORF2) highly homologous to previously described phbA genes. The
deduced amino acid sequence of ORF2, designated phbA,
comprised 392 residues and showed similarity with other
-ketoacyl-CoA thiolases, such as the biosynthetic ketothiolase
(PhbA) of A. vinelandii (GenBank accession no. AF267243)
(94% identity; 96% similarity), the acetyl-CoA acetyltransferase of
Pseudomonas aeruginosa PAO1 (AtoB) (GenBank accession no.
C83396) (83% identity; 91% similarity), and the
-ketoacyl-CoA
thiolases (PhbA) of Pseudomonas sp. strain 61-3 (GenBank
accession no. T44362) (80% identity; 89% similarity) and R. eutropha (GenBank accession no. J05003) (67% identity; 79%
similarity).
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70-dependent promoters were found in the
region upstream from phbB.
Construction of a PHB synthase mutant by gene inactivation.
A
578-bp fragment from the Azotobacter sp. strain FA8
phbC gene containing a PstI internal restriction
site was obtained by PCR amplification of genomic DNA using primers C2
(5'CGC AAT CCC GTT GAT AAG 3') and C3 (5'CGC TTT TCA
GGA TCA ATG TC 3') (Fig. 1). The amplification fragment was
cloned in the pGEM-T Easy cloning vector (Promega), digested with
PstI, and ligated with a kanamycin cassette obtained from
plasmid pUC4K (Pharmacia, San Francisco, Calif.) cut with
PstI. A 1,750-bp EcoRI fragment carrying the whole insert (phbC gene fragment with kanamycin cassette)
was cloned into the mobilizable Emr plasmid pAT18
(22), which cannot replicate in Azotobacter, and used to transform E. coli S17-1.
Kmr, Emr transformants were
selected on Luria-Bertani plates containing 50 µg of kanamycin/ml and
100 µg of erythromycin/ml, and their recombinant plasmids were
purified using standard techniques and checked by restriction analysis.
One of these transformants was used as a conjugation donor in
order to introduce the recombinant plasmid, designated pATpoliK
(Table 1), into Azotobacter sp. FA8. Transconjugants were
selected on Burk's medium (9) containing 1.5% (wt/vol)
agar, 0.5% (wt/vol) sucrose, and 5 µg of kanamycin/ml. Their
PHB phenotype was verified by gas chromatography of the methyl ester
derivatives as previously described (Table
2). One PHB-negative mutant,
Azotobacter sp. UBA 60-3, was chosen for further studies. In
order to characterize the mutant by complementation, we cloned a 2.3-kb
HindIII fragment from pAC6, containing the complete
phbC gene, into the mobilizable Tetr
plasmid pRK404 (3), downstream from the
lac promoter, giving rise to plasmid pRKpolC1 (Table 1).
This construction was introduced in E. coli S17-1 by
transformation and transferred to mutant Azotobacter sp. UBA
60-3 by conjugation. All the Tetr transconjugants
were able to accumulate PHB, indicating that the mutation in
Azotobacter sp. UBA 60-3 was complemented by the phbC gene (Table 2). The capacity of the transconjugants to
accumulate PHB was analyzed by gas chromatography as indicated above.
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Production of polyhydroxyalkanoates from different carbon sources
in Azotobacter sp. strain FA8.
Bacterial PHA
synthases can be classified in three classes, depending on the type of
hydroxyalkanoates they can use as substrates and their subunit
composition (14). PHA synthases that prefer three to five
carbon substrates and are composed of one type of subunit are called
short-chain-length (SCL) PHA synthases and belong to class I. PHA
synthases that use substrates with 6 to 14 carbons are also composed of
one type of subunit, are called medium-chain-length (MCL) PHA
synthases, and belong to class II. The best known example of class I
PHASCL synthases is the R. eutropha PHB synthase. Most pseudomonads have PHA synthases
belonging to the second group, PHAMCL synthases.
Class III PHA synthases prefer three to five carbon substrates and are
composed of two different subunits: PhaC (PHA synthase homologue) and
PhaE (20). An exception of the class III enzymes is the
Thiocapsa pfennigii PHA synthase, which also accepts six to
eight carbon substrates (6). Class II PHAMCL
synthase genes expressed in E. coli facilitated the accumulation of PHAMCL from fatty acids when
fatty acid
-oxidation was truncated (10, 11, 12).
-ketoacyl-CoA thiolase and
acetoacetyl-CoA reductase (Fig 1), is a class I PHA synthase. This
conclusion is supported by the fact that (i) this enzyme cannot
incorporate MCL hydroxyalkanoates into PHA, and (ii) the product of the
phbC gene reestablishes the capacity of R. eutropha PHB-4 to accumulate PHB. The Azotobacter sp.
FA8 phb genes showed great homology to the phb
genes of a PHB-producing Pseudomonas strain,
Pseudomonas sp. 61-3 (8). Similarities in the
genes between members of these genera have been previously described
(4) and could be due to a common phylogenetic origin or
horizontal gene transfer.
The importance of PHAs to the fitness and survival of bacteria during
periods of starvation has been proposed (2, 7). Recent
work has established a correlation between polymer utilization and
nucleotide accumulation and provides insight into the mechanism by
which PHAs enhance the survival capabilities of bacteria
(15). The isolation of the genes described in the present
study will facilitate both applied and basic research on
polyhydroxyalkanoates in nitrogen-fixing soil bacteria.
Nucleotide sequence accession numbers. The nucleotide sequences reported in this paper have been deposited in the EMBL database under the accession numbers AJ319748 (corresponding to the Azotobacter sp. FA8 phbC and phbA genes) and AJ311166 (corresponding to the Azotobacter sp. FA8 phbB gene).
While the manuscript of this report was in the process of being evaluated, the sequences corresponding to the phb gene cluster of A. vinelandii were released. These sequences, annotated under the GenBank accession number AF267243, include the phbC and phbB genes, which exhibit high amino acid homology (91% identity and 95% similarity for phbC; 94% identity and 97% similarity for phbB) with the corresponding Azotobacter sp. FA8 genes described in this study.| |
ACKNOWLEDGMENTS |
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We thank Patrice Courvalin for his kind gift of plasmid pAT18 and Luciano Chaneton for help in some of the cloning experiments.
This work was funded by the European Commission under contract ERB5514IC18-CT97-0201 and the Agencia Nacional de Promoción Científica y Tecnológica. G.J.V. was the recipient of a graduate student fellowship from the University of Buenos Aires. B.S.M is a researcher from CONICET (Consejo Nacional de Investigaciones Científicas y Técnicas).
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FOOTNOTES |
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* Corresponding author. Mailing address: Departamento de Química Biológica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, 1428 Buenos Aires, Argentina. Phone: 54-11-4576-3334. Fax: 54-11-4576-3342. E-mail: bea{at}qb.fcen.uba.ar.
Present address: Laboratory of Biochemistry and Molecular Biology,
Stazione Zoologica A. Dohrn, 80121 Naples, Italy.
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