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Applied and Environmental Microbiology, December 2001, p. 5512-5519, Vol. 67, No. 12
0099-2240/01/$04.00+0 DOI: 10.1128/AEM.67.12.5512-5519.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Degradation of Xylan to D-Xylose by
Recombinant Saccharomyces cerevisiae Coexpressing the
Aspergillus niger
-Xylosidase (xlnD) and
the Trichoderma reesei Xylanase II
(xyn2) Genes
D. C.
La Grange,
I.
S.
Pretorius,
M.
Claeyssens, and
W. H.
van
Zyl*
Department of Microbiology, University of
Stellenbosch, Stellenbosch 7600, South Africa
Received 27 April 2001/Accepted 21 September 2001
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ABSTRACT |
The
-xylosidase-encoding xlnD gene of
Aspergillus niger 90196 was amplified by the PCR technique
from first-strand cDNA synthesized on mRNA isolated from the fungus.
The nucleotide sequence of the cDNA fragment was verified to contain a
2,412-bp open reading frame that encodes a 804-amino-acid propeptide.
The 778-amino-acid mature protein, with a putative molecular mass of
85.1 kDa, was fused in frame with the Saccharomyces
cerevisiae mating factor
1 signal peptide
(MF
1s) to ensure correct posttranslational processing in
yeast. The fusion protein was designated Xlo2. The recombinant
-xylosidase showed optimum activity at 60°C and pH 3.2 and optimum
stability at 50°C. The Ki(app) value for
D-xylose and xylobiose for the recombinant
-xylosidase
was determined to be 8.33 and 6.41 mM, respectively. The
XLO2 fusion gene and the XYN2
-xylanase gene
from Trichoderma reesei, located on URA3-based
multicopy shuttle vectors, were successfully expressed and coexpressed
in the yeast Saccharomyces cerevisiae under the control of
the alcohol dehydrogenase II gene (ADH2) promoter and terminator. These recombinant S. cerevisiae strains
produced 1,577 nkat/ml of
-xylanase activity when expressing only
the
-xylanase and 860 nkat/ml when coexpressing the
-xylanase
with the
-xylosidase. The maximum
-xylosidase activity was 5.3 nkat/ml when expressed on its own and 3.5 nkat/ml when coexpressed with
the
-xylanase. Coproduction of the
-xylanase and
-xylosidase
enabled S. cerevisiae to degrade birchwood xylan to
D-xylose.
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INTRODUCTION |
Plant cell walls, the major
reservoir of fixed carbon in nature, contain three major polymers:
cellulose (insoluble fibers of
-1,4-glucan), hemicellulose
(noncellulosic polysaccharides including xylans, mannans, and glucans)
and lignin (a complex polyphenolic structure) (1, 45).
-1,4-Xylans are found mainly in secondary walls of plants and can
represent up to 35% of the total dry weight in certain plants. Xylan
is a complex polysaccharide consisting of a backbone of
-D-1,4-linked xylopyranoside units substituted with
acetyl, glucuronosyl, and arabinosyl side chains. Endo-
-xylanases
(EC 3.2.1.8) act on xylans and xylo-oligosaccharides, producing mainly
mixtures of xylooligosaccharides (4, 23).
-D-Xylosidases (EC 3.2.1.37) hydrolyze
xylooligosaccharides, produced through the action of
-xylanases, to
D-xylose. Many bacterial and fungal species are able to
utilize xylans as a carbon source (18). Strains of the
fungi Trichoderma and Aspergillus secrete large
amounts of efficient xylan-degrading enzymes (8, 16, 51).
Recently, interest in
-xylanases has increased because of their
application in biobleaching (30, 44) and the food (31) and animal feed (3, 34, 47) industry.
Trichoderma reesei is a filamentous mesophilic fungus that
is well known for its cellulolytic and xylanolytic enzymatic activities (12, 43). The two major inducible endo-
-xylanases
secreted by this fungus are Xyn1 and Xyn2 (46). They are
both relatively small protein molecules, with molecular masses of 19 and 21 kDa, respectively, but Xyn2 represents more than 50% of the
total xylanolytic activity of T. reesei cultivated on xylan.
Fungi of the genus Aspergillus are also efficient producers
of cellulose- and xylan-degrading enzymes, regulated at the
transcriptional level by the XlnR activator (49). The two
endo-
-xylanases and the
-xylosidase in A. niger are
encoded by xlnB, xlnC, and xlnD, respectively.
The xlnD gene contains an open reading frame of 2,412 nucleotides, which encodes a protein of 804 amino acids with a
predicted molecular mass of 85 kDa. The protein is N glycosylated and
contains 15 potential N-glycosylation sites (48). Sequence
similarity was found to
-glycosidases (
-xylosidase and
-glucosidases) of family 3, which include enzymes from both
bacterial and fungal origins (20, 33, 35, 48). The
condensation reaction of this
-xylosidase has been used for the
synthesis of disaccharides such as
,
-1,1-xylodisaccharide,
-1,4-xylodisaccharide (xylobiose),
-1,2-xylodisaccharide,
-1,4-xylodisaccharide, and
-1,3-xylodisaccharide
(17). S. cerevisiae has been successfully used
for the production of related fungal
-xylosidase and
-glucosidases belonging to family 3 (7, 32, 33).
Different Candida species (C. maltosa, C. tropicalis, and C. utilis) are currently used in
industry for the production of single-cell protein and ethanol from
steamed hemicellulose (21). Even though these
Candida strains are able to ferment D-xylose, none of them are able to tolerate the same levels of ethanol as Saccharomyces cerevisiae does, and, furthermore, they cannot
ferment hexose sugars as effectively. However, the main disadvantage of S. cerevisiae is the fact that it cannot hydrolyze xylan or
utilize or ferment D-xylose, the main component of xylan.
While research is continuing on the development of a S. cerevisiae strain able to ferment D-xylose (9,
14, 28, 50), we are working toward the construction of strains
able to break down the xylan backbone to its monomeric constituent,
D-xylose.
In this paper, we describe the molecular cloning of the A. niger
xlnD gene and its expression in S. cerevisiae.
Expression and coexpression of xlnD and xyn2 from
T. reesei in yeast was obtained with the aid of multicopy
plasmids using the derepressible S. cerevisiae alcohol
dehydrogenase II gene promoter (ADH2P) and terminator (ADH2T) sequences (38).
The enhanced production of both the recombinant enzymes in
non-selective complex medium, without the risk of losing the episomal
vector, was obtained by constructing autoselective recombinant
fur1 S. cerevisiae strains (29).
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MATERIALS AND METHODS |
Microbial strains and plasmids.
The relevant genotypes and
corresponding sources of the yeast and bacterial strains that were
constructed and used in this study are summarized in Table
1.
Media and culture conditions.
Escherichia coli
was cultivated on Luria-Bertani medium (39), supplemented
with ampicillin (100 µg/ml) for plasmid selection. S. cerevisiae Y294 was cultivated on either YPD medium (1% yeast extract, 2% peptone, 2% glucose) or selective synthetic complete (SC)
medium (containing 1 or 2% glucose, yeast nitrogen base without amino
acids [Difco], 20 mM succinate [pH 6], and all the required growth
factors except uracil [SC
Ura]]. Solid media contained
2% agar. A. niger was also cultivated in SC medium with all
the necessary growth factors but with 0.3% oat spelt xylan as the sole
carbon source for induction of the xylanolytic enzymes. Bacteria were
routinely cultured at 37°C and yeast and A. niger were
cultured at 30°C in 300-ml Erlenmeyer flasks, containing 100 ml of
medium, on a rotary shaker at 150 rpm. Approximately 2 × 106 cells were used as inoculum in yeast cultures for
enzymatic assays.
RNA isolation, first-strand cDNA preparation, and PCR
amplification.
Total cellular RNA and mRNA from A. niger were prepared as described previously (24). The
A. niger xlnD gene was amplified from a first-strand cDNA
copy prepared from mRNA with the aid of two oligonucleotides:
ASNXLND-left (5'-GATCATCGATCAACCATGGCGCACTCA-3') and
ASNXLND-right (5'-CATGCTCGAGGTAATAGGCTGACTCTCATCCC-3').
These primers were based on the sequence of the mature region of
the A. niger xlnD gene (accession number Z84377). DNA was
amplified in 50-µl reaction mixtures (10 pmol of each primer, AMV/Tfl
reaction buffer, 1 mM MgSO4, 200 µM each deoxynucleoside
triphosphate, 1 µl of mRNA [100 ng/µl], 5 U of avian
myeloblastosis virus reverse transcriptase [Promega, Access RT-PCR
system], and 5 U of Tfl DNA polymerase [Promega, Access
RT-PCR system]) under mineral oil with a Biometra Trio Thermoblock TB1
(Biometra Biomedizinische Analytik, Göttingen, Germany). The
reaction mixture was incubated at 48°C for 45 min to allow
first-strand cDNA synthesis to take place. Subsequently, denaturation,
annealing, and polymerization were carried out for 30 s at 94°C, 1 min at 53°C, and 2 min 30 s at 68°C, respectively, for 33 cycles. The amplified DNA fragment was ligated to pGEM-T-Easy using the
pGEM-T-Easy vector system (Promega), as specified by the manufacturer.
DNA manipulations and plasmid constructions.
Standard
protocols were followed for DNA manipulation (39).
Restriction endonuclease-digested DNA was eluted from agarose gels by
the method of Tautz and Renz (41). Restriction
endonucleases, T4 DNA ligase, the Klenow fragment of E. coli
DNA polymerase I, and DNA linkers were purchased from Roche Molecular
Biochemicals and used as recommended by the manufacturer. The
construction of pDLG1 and pDLG5 (24), as well as pRR1
(37), was described previously. The xlnD gene
cloned into plasmid pGEM-T-Easy was sequenced, and the derived sequence
was used to design PCR primer DAANXLND-left
(5'-GATCATCGATACACCAGCTATGTCGATTAC-3'). The xlnD gene was amplified from the pGEM-T-Easy vector without its native signal sequence with the aid of primers DAANXLND-left and ASNXLND-right and cloned as a 2.4-kb ClaI-SalI fragment into
the ClaI and XhoI sites of pRLR1, to create the
XLO2 fusion gene in plasmid pDLG55. The PCR was done in a
50-µl reaction mixture (10 pmol of each primer, Pfu reaction buffer,
1 mM MgCl2, 200 µM each deoxynucleoside triphosphate, 5 µl of pGEM-T-Easy with xlnD DNA [10 ng/µl], and 2.5 U
of cloned Pfu DNA polymerase [Stratagene]) with a
Perkin-Elmer GeneAmp PCR System 2400 apparatus (The Perkin-Elmer Corp.,
Norwalk, Conn.). Denaturation, annealing, and polymerization were
carried out for 1 min at 94°C, 1 min at 50°C, and 5 min at 72°C,
respectively, for 28 cycles. Plasmid pDLG5 was digested with
HindIII, the overhanging ends were filled in with DNA
polymerase I (Klenow fragment), and a BamHI linker was
inserted at this site to create plasmid pDLG7. Plasmid pDLG56 was
constructed by digesting plasmid pDLG7 with BamHI, isolating
the 2.7-kb
ADH2P-xyn2-ADH2T
fragment, and inserting it into the corresponding site of pDLG55.
Plasmid pDF1 (24) was used to construct autoselective
S. cerevisiae strains. The relevant expression cassettes
transformed to S. cerevisiae are illustrated in Fig.
1.

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FIG. 1.
Schematic representation of the expression cassettes
used, indicating the xylanase (XYN2) and -xylosidase
(XLND) genes as well as the ADH2 promoter
(ADH2P) and terminator
(ADH2T) and the mating factor secretion
signal (MF 1S). XYN2 is
indicated by cross-hatched boxes, xlnD is indicated by
hatched boxes, the ADH2 promoter and terminator sequences
are indicated by open boxes, and the
MF 1S secretion signal is indicated
by solid boxes.
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Subcloning and sequencing of XLO2.
Plasmid
pGEM-T-Easy containing the
-xylosidase gene was used to construct
six deletion subclones for sequencing. The XLO2 nucleotide
sequence was determined by amplifying DNA fragments with the Big Dye
Terminator cycle-sequencing reader reaction with AmpliTaq DNA
polymerase F5 (Applied Biosystems kit) using fluorescently labeled
nucleotides, and the reaction mixtures were subjected to
electrophoresis on an Applied Biosystems automatic DNA sequencer (model
ABI Prism 377). Sequence data were analyzed by using the PC/GENE
software package (IntelliGenetics, Inc., Mountain View, Calif.).
DNA transformation and PCR confirmation of gene replacement.
E. coli and S. cerevisiae transformations were
carried out by standard techniques described by Sambrook et al.
(39) and the lithium acetate dimethylsulfoxide method
described by Hill et al. (13), respectively. Plasmid pDF1
digested with NsiI and NcoI (24) was
used to construct autoselective S. cerevisiae fur1 strains.
Replacement of the wild-type FUR1 gene with the LEU2 disrupted allele on plasmid pDF1 was confirmed by PCR
using primers FUR1-left (5'-TCCGTCTGGCATATCCTA-3') and
FUR1-right (5'-TTGGCTAGAGGACATGTA-3'). These primers
annealed near the NsiI and NcoI sites of the
FUR1 gene (24). Total cellular DNA was isolated
from S. cerevisiae strains by the method described by
Hoffman and Winston (15). DNA was amplified in 25-µl
reaction mixtures (10 pmol of each primer, Taq reaction
buffer, 2 mM MgCl2, 200 µM each deoxynucleoside triphosphate, 4 µl of genomic DNA [100 ng/µl] and 1 U of
Taq DNA polymerase [Roche Molecular Biochemicals]) with a
GeneAmp PCR System 2400 apparatus. Denaturation, annealing, and
polymerization were carried out for 30 s at 94°C, 30 s at
57°C, and 3 min at 72°C, respectively, for 30 cycles. PCR with the
wild-type strain produced a DNA fragment of 1.33 kb, while successful
gene replacement in the recombinant strains produced a DNA fragment of
3.27 kb.
Xylanase and
-xylosidase activity determination.
-Xylanase- and
-xylosidase-producing cultures were grown in YPD
for 160 h, and the enzyme activities were determined. All enzyme
activity determinations were done in triplicate in 50 mM sodium citrate
buffer at pH 5 and 50°C for 5 min, unless stated otherwise. The
-xylanase activity was determined by the method described by Bailey
et al. (2). The
-xylosidase activity was quantitated
using the chromophoric substrate
p-nitrophenyl-
-D-xyloside (PNPX)
(25). The chromophoric substrate was used at a final concentration of 5 mM unless stated otherwise. The culture supernatant was used as source of
-xylanase and supernatant with intact yeast cells was used as source of
-xylosidase for the growth curves. All
activities were expressed in katals per milliliter; 1 katal is the
amount of enzyme needed to produce 1 mol of reducing sugar (or
D-xylose equivalent) from birchwood xylan (or chromophoric substrate) per s (2).
The pH and temperature optima, thermostability, and inhibition studies
were performed with the extracellular fraction of an
S. cerevisiae Y294 (
XLO2) culture. The thermostability of
the
recombinant

-xylosidase was tested by heating enzyme samples
for
different times at various temperatures and subsequently determining
the activity at 50°C for 5 min. For the determination of the optimum
pH of the

-xylosidase, the buffers used were 50 mM citrate (pH
3.0 to 6.2) and 50 mM potassium phosphate (pH 6.2 to 8.0). Inhibition
of

-xylosidase activity on PNPX in the presence of xylobiose,
D-xylose, cellobiose, and
D-glucose was studied
by determining
the

-xylosidase activity using PNPX at a final
concentration
of 2 mM at different inhibitor concentrations (0 to 20
mM).
Analysis of xylobiose, xylotriose, and xylan degradation.
Xylobiose and xylotriose hydrolysis by strain Y294
(XLO2) was carried out in 800-µl reaction mixtures at
60°C. Xylobiose or xylotriose (100 µl of a 50 mM solution in
water), 400 µl of 100 mM citrate buffer (pH 3.4), and 200 µl of
water were thermally equilibrated before the reactions were started by
adding 100 µl of a 50-h-old culture of Y294 (XLO2), grown
in YPD, to the mixture. The total activity on PNPX of the enzyme mix
used in the above-mentioned reactions was 3.93 nkat/ml. Aliquots (80 µl) of the reaction mixtures were obtained, and the reactions
were stopped at different time intervals by incubating at
100°C for 10 min. Thin-layer liquid chromatography on silica gel
plates (Silica gel 60; Merck) in a solvent mixture of
n-propanol, ethanol, water (7:1:2) was used to separate the
hydrolysis products. After removal of the solvent, the spots of sugar
were visualized by dipping in a solution of ethanol and sulfuric acid
(95:5) followed by incubation at 180°C for about 2 min.
Xylan degradation by the recombinant yeast strains was analyzed by
inoculating the relevant strains (100 µl of a 24-h-old
culture) into
YPD medium buffered at pH 5 with 0.1 mM citrate
buffer containing 5%
birchwood xylan. Aliquots were removed at
different time intervals,
extracted twice with phenol-chloroform-isoamyl
alcohol (25:24:1), and
analyzed by thin-layer liquid chromatography.
The amount of xylose
produced was quantified by a high-performance
liquid chromatography
system (model DX500; Dionex, Sunnyvale,
Calif.) using an anion-exchange
column (Carbopac PA-100, 4 × 250,
and Carbopac PA-100, guard) and
a pulsed amperometric detector
(ED40). A gradient of sodium acetate (20 to 100 mM) in 60 mM NaOH
was used. Data were analyzed using the Dionex
Peaknet software
package.
Nucleotide sequence accession number.
The XLO2
sequence was deposited at GenBank (accession number AF108944).
 |
RESULTS |
Cloning and expression of the A. niger xlnD gene and
T. reesei xyn2 gene in yeast.
The A. niger
xlnD gene was amplified from first-strand cDNA prepared from
A. niger by using sequence-specific PCR primers. The PCR
product (lacking the native 26-amino-acid signal-encoding region) was
inserted into plasmid pRLR1 in frame with the yeast mating factor
secretion signal (MF
1s) under the control of the derepressible ADH2 gene promoter and terminator,
creating plasmid pDLG55 (Fig. 1C). Correct processing by S. cerevisiae would lead to the production of an 804-amino-acid Xlo2
protein with a putative molecular mass of 85.1 kDa. Plasmid pDLG55 was subsequently transformed into S. cerevisiae Y294, and the
production of functional
-xylosidase was confirmed by determining
the enzymatic hydrolysis of PNPX to p-nitrophenol and
D-xylose. The
ADH2P-xyn2-ADH2T gene cassette was
isolated from plasmid pDLG7 (Fig. 1B) and cloned into plasmid pDLG55
(creating plasmid pDLG56 [Fig. 1D]), which contained both the
T. reesei xyn2 and A. niger XLO2 genes. Plasmid pDF1 was used to disrupt the FUR1 gene of S. cerevisiae strains containing plasmids pDLG1, pDLG5, pDLG55, and
pDLG56, creating strains Y294 (VECT), Y294
(XYN2), Y294 (XLO2), and Y294 (XYN2 XLO2), respectively.
Effects of pH and temperature on
-xylosidase activity.
The
recombinant
-xylosidase activity peaked between pH 3 and 5, with the
highest activity (5.4 nkat/ml) measured at pH 3.2 in 50 mM citrate
buffer (Fig. 2A). The optimum temperature
for this enzyme was at 60°C (Fig. 2B). Although the highest
-xylosidase activity was measured at 60°C, the enzyme was unstable
at this temperature (Fig. 2C). The
-xylosidase activity decreased by almost 60% after a 20-min incubation at 60°C, and less than 10% activity could be measured after a 2-h incubation. However, the recombinant enzyme was relatively stable at 55°C, with more than 80%
of the activity remaining after 2 h at this temperature.

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FIG. 2.
(A and B) Effect of pH at 50°C (A) and temperature at
pH 5.0 (B) on the activity of Xlo2. The buffers used in the enzyme
reactions were 50 mM citrate buffer (pH 3 to 6.2) ( ) and 50 mM
phosphate buffer (pH 6.2 to 9) ( ). (C) The temperature stability of
Xlo2 at 50°C ( ), 55°C ( ), 60°C ( ), and 65°C ( ), was
determined by preincubating the enzyme at these temperatures in the
absence of the substrate for 0, 2, 5, 10, 20, 40, 90, and 120 min
before determining the -xylosidase activity on PNPX. The
-xylosidase activity prior to the preincubations (time 0 min) was
taken as 100%.
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Xlo2 activity on xylobiose and xylotriose.
The hydrolysis of
xylobiose and xylotriose by the recombinant A. niger
-xylosidase produced in yeast was determined by incubating the
enzyme in the presence of these substrates at 50°C. The
-xylosidase hydrolyzed xylotriose less efficiently than it
hydrolyzed xylobiose; however, hydrolysis of both substrates to
D-xylose was almost complete after 7 h (Fig.
3A).

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FIG. 3.
(A) Thin-layer chromatogram of the hydrolysis of
xylobiose and xylotriose by S. cerevisiae (XLO2).
Reaction mixtures were incubated at 50°C, and samples were taken
after 0 and 30 min and 1, 2, 3, 4, 5, and 7 h.
D-Xylose, xylobiose, and xylotriose were used as standards
(S). (B) A plot of (vo/vi) 1 versus the xylobiose concentration to investigate competitive
inhibition of -xylosidase activity on PNPX in the presence of
xylobiose ( ), D-xylose ( ), cellobiose ( ), or
D-glucose ( ).
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Competitive inhibition of the hydrolysis of 2 mM PNPX by the
recombinant

-xylosidase was determined in the presence of 0
to 20 mM
xylobiose,
D-xylose, cellobiose, and
D-glucose.
The
Km value for cell wall-bound recombinant
Xlo2

-xylosidase on PNPX
was determined to be 0.4 mM
(
5). To determine the approximate
Km value of the recombinant Xlo2

-xylosidase
on its natural substrate,
xylobiose, the apparent inhibition constant,
Ki(app),
for xylobiose as competitive inhibitor
for

-xylosidase on PNPX
can be determined from the equation
(
27)
When the PNPX concentration (2 mM) and
Km
for PNPX (0.4 mM) are substituted into the equation, it can be
simplified to
The plot of (
vo/vi)

1 versus the xylobiose concentration (Fig.
3B) was linear and thus allows
the determination of the
Ki(app) for Xlo2 as
0.167/slope. The slope was determined
by linear regression in Sigmaplot
for Windows (version 4.0), and
the
Ki(app)
values for xylose and xylosidase were determined
as 8.33 and 6.41 mM,
respectively. Glucose and cellobiose did
not act as competitive
inhibitors of PNPX in the 0 to 20 mM range
(Fig.
3B).
Production of
-xylosidase and
-xylanase by recombinant yeast
strains.
The production of
-xylanase and
-xylosidase, as
well as the cell growth of the different recombinant yeast strains, was monitored over a 160-h period (Fig. 4).
Relatively high levels of
-xylanase activity were recorded in Y294
(XYN2) and Y294 (XYN2 XLO2) at ca. 72 h of growth
(Fig. 4A). After 72 h, the activity still increased gradually to
reach a maximum of 1,577 and 860 nkat/ml in Y294 (XYN2) and
Y294 (XYN2 XLO2), respectively. The
-xylosidase activity
in Y294 (XLO2) and Y294 (XYN2 XLO2) increased rapidly to reach its maximum of 5.3 and 3.5 nkat/ml, respectively, after only 48 h of growth (Fig. 4B). The activity subsequently decreased and stabilized at a constant level of about 2 nkat/ml in both
strains. In all three recombinant strains expressing the T. reesei
-xylanase and/or the A. niger
-xylosidase
gene, reduced cell yield rates were obtained compared with the parental
strain containing plasmid pDLG1 (Fig. 4C).

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FIG. 4.
Time course of -xylanase (A), -xylosidase (B), and
cell mass (C) produced by S. cerevisiae Y294
(VECT) ( , ), Y294 (XYN2) ( , ), Y294
(XLO2) ( , ), and Y294 (XYN2 XLO2) ( ,
) in shake flask cultures. The -xylanase activities were assayed
by the method of Bailey et al. (2) using the culture
supernatant as the source of enzyme, and the -xylosidase activities
were assayed as described by La Grange et al. (25), using
cell cultures as the source of enzyme. Enzyme activities were expressed
in katals per milliliter and are indicated by solid symbols. The enzyme
activities represent the average of three independent cultures. The
maximum deviation for the -xylanase and -xylosidase activities
did not exceed 11 and 12%, respectively. Yeast cell counts were
determined with a haemocytometer and are indicated by open symbols.
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Xylan degradation by S. cerevisiae.
Y294
(VECT), Y294 (XYN2), and Y294 (XYN2
XLO2) were individually inoculated in YPD medium plus 5%
birchwood xylan to analyze the ability of the recombinant S. cerevisiae strains to degrade xylan. Samples were taken after 48, 72, and 136 h of growth at 30°C. Both Y294 (XYN2) and
Y294 (XYN2 XLO2) were able to degrade xylan; however, Y294
(XYN2) produced primarily xylobiose while Y294 (XYN2
XLO2) was able to degrade xylan to its monomeric constituent, D-xylose (Fig. 5). HPLC
analysis showed that Y294 (XYN2 XLO2) released more than
20 g of D-xylose per liter from 50 g of birchwood xylan per liter after 136 h of growth (Table
2) while Y294 (XYN2) released
only ca. 7 g of D-xylose per liter.
D-Xylose is the major end product released from birchwood
by Y294 (XYN2 XLO2), whereas Y294 (XYN2)
predominantly released xylobiose with xylotriose as minor
product. Although the T. reesei Xyn2
-xylanase released D-xylose, xylobiose, and xylotriose from birchwood xylan,
the A. niger Xlo2
-xylosidase synergistically enhanced
the release of D-xylose as dominant end product.

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FIG. 5.
Xylan degradation by Y294 (VECT) (lanes 1),
Y294 (XYN2) (lanes 2), and Y294 (XYN2 XLO2)
(lanes 3). Samples were taken after 48, 72, and 136 h of growth at
30°C. D-Xylose, xylobiose, and xylotriose were used as
standards (S). The right-hand lane (labeled X) contains the standard
(D-xylose, xylobiose, and xylotriose), as well as the 136-h
sample of Y294 (VECT), to monitor the effects of the medium
components on the migration of D-xylose, xylobiose, and
xylotriose.
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TABLE 2.
Release of D-xylose, xylobiose, and
xylotriose from birchwood xylan (50 g/liter) after incubation with
recombinant S. cerevisiae strains
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DISCUSSION |
mRNA was isolated from the xylanolytic fungus A. niger
ATCC 90196, and the xlnD gene encoding the
-xylosidase
XlnD was amplified with the aid of sequence-specific PCR primers. The
DNA sequence was verified and compared with the DNA sequence published
by Van Peij et al. (48) and with other DNA sequences
available in the GenBank database. The nucleotide sequence of the cDNA
fragment is 94 and 98% identical to the DNA and amino acid sequences,
respectively, of the A. niger xlnD sequence reported by Van
Peij et al. (48) (accession number Z84377). The native
xlnD contains a predicted signal peptide of 26 or 27 amino
acids, and the mature protein has a predicted molecular mass of 88 kDa.
It also exhibits significant levels of similarity at the amino acid
level to the A. nidulans (66% identity), A. oryzae (64% identity), and T. reesei (63% identity)
-xylosidases (20, 33, 35). It is noteworthy that the
Bxl1 of T. reesei also exhibited
-L-arabinofuranosidase and
-L-arabinopyranosidase activities (33).
Translation in yeast can be modulated at the level of initiation by
four aspects of mRNA structure: (i) the position of the initiation
codon, i.e., whether it is the first AUG; (ii) the primary sequence or
context surrounding the AUG codon; (iii) the secondary structure both
upstream and downstream of the AUG codon; and (iv) the leader length
(22). By placing xlnD under the transcriptional control of a strong yeast promoter (ADH2P), none
of the above should pose a problem. The native secretion signal was
replaced with the MF
1S secretion
signal to facilitate secretion (36). XlnD and Xyn2 have
S. cerevisiae codon bias index values of 0.25 and 0.33, respectively, which are acceptable for efficient translation in
S. cerevisiae (40).
The xlnD and xyn2 genes were expressed from
episomal plasmids, and the resulting recombinant yeast strains were
kept under selective conditions to ensure vector stability. However,
the use of a selective synthetic medium was not ideal for the
production of high levels of heterologous proteins. We therefore
genetically altered the recombinant yeast strains to allow
autoselection for the episomal plasmids (24). The
FUR1 gene of S. cerevisiae encodes uracil
phosphoribosyltransferase, which catalyzes the conversion of uracil
into uridine 5'-phosphate in the pyrimidine salvage pathway
(19). By disrupting the FUR1 gene, S. cerevisiae Y294 was forced to utilize the complementing
URA3 gene product to synthesize uridine 5'-phosphate de
novo, even in complex (YPD) medium. The URA3 gene was
provided as the yeast selectable marker on the YEp352-based vectors
used for the expression of XYN2 and/or XLO2
genes. In this study the ADH2 promoter and terminator were
used for the expression of both the xyn2 and XLO2
genes. However, in the construction of a recombinant industrial yeast
strain, the promoter and terminator of one of these genes need to be
changed to ensure genetic stability.
The highest total
-xylanase activities obtained in YPD medium in
shake flask cultures of Y294 (XYN2) and Y294 (XYN2
XLO2) were 1,577 and 860 nkat/ml, respectively (Fig. 4). The
maximum
-xylosidase activities in Y294 (XLO2) and Y294
(XYN2 XLO2) were 5.3 and 3.5 nkat/ml, respectively, after
only 48 h of growth (Fig. 4). Aspergillus
-xylosidases are usually cell wall bound (35), and
intact yeast cells in the growth medium were used to determine these
activities; however, this does not include intracellular activity,
which accounts for almost 40% of the total
-xylosidase measured
(data not shown). Production of the recombinant
-xylanase and
-xylosidase caused a reduction in cell yields (Fig. 4), probably because of the increased metabolic burden imposed on the cells through
the high-level expression of the heterologous
-xylanase and
-xylosidase protein (10). The recombinant
-xylosidase produced by Y294 (XLO2) and Y294 (XYN2
XLO2) is active on both xylobiose and xylotriose. As expected, the
enzyme is less active on xylotriose than on xylobiose; however, both
these substrates were degraded to their monomeric constituent,
D-xylose (Fig. 3A). Xylobiose and D-xylose
acted as competitive inhibitors of recombinant Xlo2 when PNPX was used
as the substrate, but glucose and cellobiose did not (Fig. 3B). The
XlnD
-xylosidase was most probably sensitive to product
(D-xylose) inhibition, as has frequently been found for
-glucosidases belonging to the same hydrolase family (family 3)
(11, 52). The Ki(app) values for
both xylobiose and D-xylose were higher than reported for
native A. niger XlnD (42). However,
(hyper)glycosylation of the
-xylosidase, which frequently occurs
during heterologous protein expression in S. cerevisiae
(24), could affect its Ki value, as
observed for the
-xylosidase of Arxula adeninivorans
(6).
The recombinant
-xylanase has a pH optimum between 4 and 6 (24), while the
-xylosidase has an optimum of between 3 and 5 (Fig. 2A). In the recombinant yeast Y294 (XYN2 XLO2),
both enzymes should function optimally at pH 5. At the optimum
temperature of growth for S. cerevisiae (30°C), both these
enzymes are only about 30% active. When Y294 (XYN2 XLO2)
was cultivated in YPD medium containing 5% birchwood xylan, breakdown
of xylan to D-xylose was visible after 72 h (Fig. 5;
Table 2). When the residual amounts of xylobiose (1.4 g/liter)
and D-xylose (1.3 g/liter) released by nonspecific
activities present in S. cerevisiae Y294 (VECT) were subtracted Y294 (XYN2) released ca. 4.3 g of
xylotriose per liter, 10.0 g of xylobiose per liter, and 6.8 g of D-xylose per liter with the aid of recombinant Xyn2
-xylanase, which amounts to about 42% conversion of birchwood to
these end products. Y294 (XYN2 XLO2), producing both the
Xyn2
-xylanase and Xlo2
-xylosidase, released ca. 6.6 g of
xylobiose per liter and 22.0 g of D-xylose per liter,
which amounts to about 57% conversion of birchwood to these end
products. The simultaneous production of both the T. reesei
-xylanase and A. niger Xlo2
-xylosidase thus
synergistically enhanced the hydrolysis of birchwood xylan to
D-xylose as the dominant end product. These results are in
constrast with the results obtained with the recombinant S. cerevisiae strain Y294 (XYN2 XLO1) coproducing the
T. reesei
-xylanase and B. pumilus Xlo1
-xylosidase (26). The inability of Y294 (XYN2
XLO1) to yield D-xylose as the major product from 5%
birchwood xylan could most probably be ascribed to the very low Xlo1
activity (0.5 nkat/ml) produced.
Considering the eventual use of recombinant S. cerevisiae
strains to convert xylan to cell mass or ethanol through simultaneous saccharification and fermentation, the ability of recombinant S. cerevisiae Y294 (XYN2 XLO1) to degrade xylan in culture
was assessed. Actively growing cells were used to ensure maximum levels of enzyme activity throughout the experiment. The described
xylan-degrading S. cerevisiae strain, together with the
current development of S. cerevisiae strains capable of
fermenting D-xylose (9, 14), thus paves the
way to efficient xylan degradation and utilization by yeast.
 |
ACKNOWLEDGMENT |
We thank the Foundation for Research Development, South Africa,
for financial support.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Microbiology, University of Stellenbosch, De Beer St., Stellenbosch
7600, South Africa. Phone: 27-21-8085854. Fax: 27-21-8085846. E-mail: whvz{at}maties.sun.ac.za.
 |
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Applied and Environmental Microbiology, December 2001, p. 5512-5519, Vol. 67, No. 12
0099-2240/01/$04.00+0 DOI: 10.1128/AEM.67.12.5512-5519.2001
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