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Applied and Environmental Microbiology, December 2001, p. 5520-5525, Vol. 67, No. 12
0099-2240/01/$04.00+0 DOI: 10.1128/AEM.67.12.5520-5525.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Benzoate Fermentation by the Anaerobic Bacterium
Syntrophus aciditrophicus in the Absence of
Hydrogen-Using Microorganisms
Mostafa S.
Elshahed and
Michael J.
McInerney*
Department of Botany and Microbiology,
University of Oklahoma, Norman, Oklahoma 73019
Received 5 July 2001/Accepted 21 September 2001
 |
ABSTRACT |
The anaerobic bacterium Syntrophus aciditrophicus
metabolized benzoate in pure culture in the absence of
hydrogen-utilizing partners or terminal electron acceptors. The pure
culture of S. aciditrophicus produced approximately 0.5 mol of cyclohexane carboxylate and 1.5 mol of acetate per mol of
benzoate, while a coculture of S.
aciditrophicus with the hydrogen-using methanogen
Methanospirillum hungatei produced 3 mol of acetate and
0.75 mol of methane per mol of benzoate. The growth yield of the
S. aciditrophicus pure culture was 6.9 g (dry
weight) per mol of benzoate metabolized, whereas the growth yield of
the S. aciditrophicus-M. hungatei coculture was
11.8 g (dry weight) per mol of benzoate. Cyclohexane carboxylate
was metabolized by S. aciditrophicus only in a coculture with a hydrogen user and was not metabolized by S.
aciditrophicus pure cultures. Cyclohex-1-ene carboxylate was
incompletely degraded by S. aciditrophicus pure cultures
until a free energy change (
G') of
9.2 kJ/mol was
reached (
4.7 kJ/mol for the hydrogen-producing reaction).
Cyclohex-1-ene carboxylate, pimelate, and glutarate transiently
accumulated at micromolar levels during growth of an S.
aciditrophicus pure culture with benzoate. High hydrogen (10.1 kPa) and acetate (60 mM) levels inhibited benzoate metabolism by
S. aciditrophicus pure cultures. These results suggest
that benzoate fermentation by S. aciditrophicus in the
absence of hydrogen users proceeds via a dismutation reaction in which
the reducing equivalents produced during oxidation of one benzoate
molecule to acetate and carbon dioxide are used to reduce another
benzoate molecule to cyclohexane carboxylate, which is not metabolized further. Benzoate fermentation to acetate, CO2, and
cyclohexane carboxylate is thermodynamically favorable and can proceed
at free energy values more positive than
20 kJ/mol, the postulated minimum free energy value for substrate metabolism.
 |
INTRODUCTION |
Anaerobic metabolism of benzoate to
acetate, CO2, and hydrogen or formate in the
absence of light or terminal electron acceptors is
thermodynamically unfavorable. Degradation proceeds only if the
concentration of hydrogen produced during benzoate oxidation is
continuously maintained at a low level by a hydrogen-using microorganism (12, 19, 24, 26). This kind of mutual
cooperation between two species to degrade a single substrate via
interspecies hydrogen transfer is called syntrophism. In syntrophic
cocultures, hydrogen-utilizing bacteria are needed to maintain low
hydrogen levels and are not directly involved in the metabolism of the original substrate. Also, many syntrophic microorganisms can grow in
the absence of hydrogen-utilizing partners on unsaturated substrate analogues by using dismutation reactions in which part of the original
substrate is used as an electron acceptor (24).
The syntrophic benzoate degrader Syntrophus aciditrophicus
metabolizes benzoate to acetate, hydrogen, and
CO2 in cocultures with a hydrogen-using
methanogen or a sulfate reducer. S. aciditrophicus can also
grow in pure culture on crotonate (11, 12). Recent studies
of S. aciditrophicus-Methanospirillum hungatei cocultures showed that cyclohexane carboxylate transiently accumulated at a level
that was 18% of the original benzoate concentration (8). The amount of methane produced per mole of benzoate consumed by S. aciditrophicus-M. hungatei cocultures was less than the
theoretically predicted ratio (0.75) during the initial stages of
benzoate metabolism. These two observations led us to hypothesize that
a portion of the electrons produced during benzoate oxidation to
acetate and CO2 is used to reduce benzoate to
cyclohexane carboxylate (8). Benzoate reduction to
cyclohexane carboxylate could provide an alternative to interspecies
hydrogen transfer for the disposal of reducing equivalents produced
during benzoate oxidation. Thermodynamic calculations indicate that
benzoate oxidation to acetate, carbon dioxide, and hydrogen is
thermodynamically unfavorable (Table 1,
equation 1). However, benzoate reduction to cyclohexane carboxylate is
an exergonic reaction (Table 1, equation 2), which makes the overall
fermentation of benzoate to acetate,
HCO3
, and cyclohexane
carboxylate exergonic (
G0',
12.0
kJ/mol) (Table 1, equation 3). We present evidence in this report that
S. aciditrophicus is able to grow and metabolize benzoate in
the absence of a hydrogen-utilizing partner. It grows in a monoculture
by oxidizing about one half the benzoate to acetate and
CO2 and reducing the other half to cyclohexane
carboxylate (Table 1, equation 3).
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TABLE 1.
G0' values for different
oxidation-reduction reactions involved in benzoate, cyclohexane
carboxylate, and cyclohex-1-ene carboxylate metabolisma
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MATERIALS AND METHODS |
Microorganisms and media.
S.
aciditrophicus SBT (= ATCC
700169T) (12) and M. hungatei JF1 were obtained from our culture collection. All
media and stock solutions were prepared anaerobically by using the
techniques described by Balch and Wolfe (3). Pure cultures
of S. aciditrophicus and M. hungatei were
maintained in the basal medium lacking rumen fluid as described
previously (8, 18). Cocultures of S. aciditrophicus and M. hungatei were established and
grown in sulfate-free (<5 µM) benzoate basal medium as described
previously (8). When S. aciditrophicus was
tested for its ability to grow with aromatic or alicyclic substrates,
basal medium containing the test substrate at a concentration of 1.2 to
1.7 mM was inoculated with crotonate-grown pure cultures in the
stationary phase (inoculum size, 15 to 20%). All cultures were
incubated at 37°C. Hydrogen-grown cultures of M. hungatei
were incubated with shaking (100 rpm), while monocultures and
cocultures of S. aciditrophicus and M. hungatei
were incubated without shaking except when the effect of hydrogen on
benzoate metabolism was studied. The latter cultures were incubated
with shaking (100 rpm). The cultures were routinely checked for purity by microscopic observation, as well as by inoculation of thioglycolate medium. Methane production was routinely checked in pure cultures of
S. aciditrophicus growing with benzoate, cyclohexane
carboxylate, and cyclohex-1-ene carboxylate to ensure the absence of
any methanogenic activity.
Analytical procedures.
Benzoate, cyclohexane carboxylate,
and cyclohex-1-ene carboxylate were analyzed by high-performance liquid
chromatography with a reverse-phase C18
Econosphere column (250 by 4.6 mm; particle size, 5 µm; Alltech Inc.,
Deerfield, Ill.). The isocratic mobile phase consisted of 75%
phosphate buffer (25 mM sodium dihydrogen phosphate, pH 2.75) and 25%
acetonitrile. A variable-wavelength UV absorbance detector set at 214 nm was used to detect substrates and metabolites. Benzoate was also
occasionally analyzed with the same column by using detection at 254 nm
and an isocratic mobile phase consisting of 70% 50 mM sodium acetate
buffer (pH 4.5) and 30% acetonitrile (11). Gas
chromatography-mass spectroscopy was used to identify and quantify
metabolites produced at micromolar levels as described previously
(8).
Acetate was quantified by ion chromatography using a Dionex system
(Dionex, Sunnyvale, Calif.), an AS11A-SC column (particle
size, 4 mm;
Dionex), and 0.1% NaOH as the mobile phase. Butyrate
and crotonate
were analyzed by gas chromatography as described
previously
(
12). Methane was analyzed by gas chromatography
(
14). Hydrogen contents were measured with a mercury vapor
detector
(
12). Protein was quantified by the Bradford
method (
6) using
commercially available kits (Pierce
Chemical Co, Rockford, Ill.).
Thermodynamic calculations.
The
G' values for
the hydrogen-producing, overall syntrophic substrate degradation, and
substrate fermentation reactions under experimental conditions were
calculated according to Thauer et al. (29). Equations
describing benzoate, cyclohexane carboxylate, and cyclohex-1-ene
carboxylate fermentation or syntrophic degradation, as well as the
G0' values used in these
calculations, are given in Table 1. Most values are molar
concentrations; the only exceptions are the hydrogen and methane
values, which are expressed in atmospheres (1 atm = 101,325 Pa).
The HCO3
concentration was not
determined and was assumed to be 0.0365 M in all experiments.
Chemicals.
Sodium benzoate was purchased from Sigma Chemical
Co. (St. Louis, Mo.), cyclohexane carboxylic acid was purchased from
Acros Organics (Fair Lawn, N.J.), and cyclohex-1-ene carboxylic acid was purchased from Aldrich Chemical Co. (Milwaukee, Wis.). All other
chemicals used in this study were obtained from Sigma, Aldrich, or
Fisher (Pittsburgh, Pa.).
 |
RESULTS |
Metabolism of benzoate and cyclohexane carboxylate by S.
aciditrophicus in the presence and absence of
H2-utilizing microorganisms.
Pure cultures of S. aciditrophicus metabolized benzoate exponentially (Fig
1A) at a rate of 0.41 ± 0.04 day
1. S. aciditrophicus produced
0.53 mol of cyclohexane carboxylate and 1.44 mol of acetate per mol of
benzoate degraded (Fig. 1A and Table 2).
These values are close to those predicted by the fermentation
reaction (Table 1, equation 3). There was a significant correlation (r2 = 0.99) between
benzoate consumption and cyclohexane carboxylate production during the
experiment (Fig. 1A, inset). The benzoate fermentation activity of
monocultures of S. aciditrophicus could be maintained by
repeated subculturing. No methane was detected during the experiment.
Microscopic observation revealed the presence of only the S. aciditrophicus cell morphotype at the end of the experiment. The
hydrogen concentration increased from 38.5 ± 9.5 Pa at the start
of the experiment to 97.9 ± 7.2 Pa at the end of the experiment
(Table 2), indicating that a small portion of the electrons produced
during benzoate oxidation was used to reduce protons to hydrogen. The
initial crotonate concentration was 120 µM due to carryover with the
inoculum. The final crotonate concentration was 85 µM. Butyrate was
not produced at detectable levels (<0.5 µM) by the end of the
experiment, which indicated that crotonate did not act as a terminal
electron acceptor in this experiment. The
G' values for
benzoate fermentation (Table 1, equation 3) and for hydrogen production
from benzoate (Table 1, equation 1) were
15.4 and
3.3 kJ/mol,
respectively. Analysis by gas chromatography-mass spectrometry showed
that cyclohex-1-ene carboxylate, pimelate, and glutarate transiently
accumulated at maximum concentrations of 24.2, 4.5, and 3.67 µM,
respectively.

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FIG. 1.
Metabolism of benzoate by pure cultures of S.
aciditrophicus (A)and by S.
aciditrophicus-M. hungatei cocultures (B).
Symbols: , benzoate; , cyclohexane carboxylate; , acetate;
, methane; , benzoate in autoclaved controls; , cyclohexane
carboxylate in autoclaved controls; , acetate in autoclaved
controls; , methane in autoclaved controls. (Inset) Correlation
between benzoate consumption and cyclohexane carboxylate production in
S. aciditrophicus pure cultures. The data are
averages ± standard deviations based on triplicate microcosms.
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TABLE 2.
Stoichiometry of benzoate, cyclohex-1-ene carboxylate,
and cyclohexane carboxylate metabolism by S. aciditrophicus
in pure culture and in coculture with M. hungatei
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|
The
S. aciditrophicus-M. hungatei coculture metabolized
benzoate at a slightly higher rate (0.53 ± 0.13 day
1) than
S. aciditrophicus
monocultures metabolized benzoate (Fig.
1B). The coculture produced
3.27 mol of acetate and 0.84 mol of
methane per mol of benzoate
metabolized (Table
2). These values
were consistent with the
theoretical stoichiometry (Table
1,
equation
8).
Benzoate metabolism by monocultures of
S. aciditrophicus was
accompanied by a net increase of 3.26 µg of protein per µmol
of
benzoate metabolized. Assuming that 47% of the cell dry mass
was
protein (
9), then the
S. aciditrophicus cell
yield was
about 6.9 g/mol of benzoate. Therefore, about 0.66 mol of ATP
(net) per mol of benzoate was produced during the fermentation
(assuming a
YATP value of
10.5 g of biomass/mol of substrate)
(
29). The
S. aciditrophicus-M. hungatei coculture cell yield
was 11.8 g/per mol of benzoate metabolized, indicating that about
1.1 mol of ATP
(net) was produced per mol of benzoate
metabolized.
S. aciditrophicus metabolized cyclohexane carboxylate only
in a coculture with a hydrogen-using methanogen. The coculture
produced
3.27 mol of acetate and 1.43 mol of methane per mol of
cyclohexane
carboxylate consumed (Table
2). These values are
consistent with the
theoretical stoichiometry for cyclohexane
carboxylate degradation to 3 mol of acetate and 1.5 mol of methane
per mol of cyclohexane
carboxylate (Table1, equation
10).
Effects of hydrogen and acetate on benzoate metabolism by pure
cultures of S. aciditrophicus.
Benzoate degradation
by S. aciditrophicus monoculture was inhibited by high
levels of hydrogen (10.1 kPa) (Fig 2A).
Benzoate consumption was not inhibited in controls that received an
equal amount of nitrogen. Benzoate metabolism in pure cultures of
S. aciditrophicus that received 60 mM sodium acetate was
inhibited compared to controls that received 60 mM sodium chloride (Fig 2B).

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FIG. 2.
(A) Effect of hydrogen on benzoate metabolism by
S. aciditrophicus. Symbols: and , benzoate
utilization and cyclohexane carboxylate production, respectively, in
cultures receiving 10.1 kPa of hydrogen; and , benzoate
production and cyclohexane carboxylate production, respectively, in
cultures receiving 10.1 kPa of nitrogen. (B) Effect of acetate on
benzoate metabolism by S. aciditrophicus. Symbols: and , benzoate utilization and cyclohexane carboxylate production,
respectively, in cultures receiving 60 mM sodium acetate; and ,
benzoate production and cyclohexane carboxylate production,
respectively, in cultures receiving 60 mM sodium chloride. The data are
averages ± standard deviations based on triplicate microcosms.
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|
Metabolism of cyclohex-1-ene carboxylate by pure cultures of
S. aciditrophicus.
S. aciditrophicus
partially metabolized cyclohex-1-ene carboxylate with concurrent
production of cyclohexane carboxylate and small amounts of acetate (Fig
3). Only 63% of the initial amount of
substrate was metabolized, and about 1 mol of cyclohexane carboxylate and 0.3 mol of acetate per mol of cyclohex-1-ene carboxylate were produced by S. aciditrophicus pure cultures (Table 2). The
hydrogen level in cyclohex-1-ene carboxylate-grown monocultures
increased from 51.7 ± 1.6 to 839 ± 68 Pa. The final value
was about 320 times the value obtained for S. aciditrophicus-M.
hungatei cocultures grown with cyclohex-1-ene carboxylate and 9 times the value obtained for S. aciditrophicus pure cultures
grown with benzoate. The
G' calculated for cyclohex-1-ene
carboxylate oxidation (Table 1, equation 4) at the end of the
experiment was
4.7 kJ, while the
G' obtained for the
overall cyclohex-1-ene carboxylate fermentation reaction (Table 1,
equation 6) was
9.2 kJ/mol. S. aciditrophicus-M. hungatei
cocultures completely metabolized cyclohex-1-ene carboxylate and
produced 2.71 mol of acetate and 1.30 mol of methane per mol of
cyclohex-1-ene carboxylate. These values are consistent with the
theoretical stoichiometry for cyclohex-1-ene carboxylate metabolism by
syntrophic cocultures (Table 1, equation 9).

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FIG. 3.
Metabolism of cyclohex-1-ene carboxylate by S.
aciditrophicus pure cultures. Symbols: , cyclohex-1-ene
carboxylate; , cyclohexane carboxylate; , acetate; ,
cyclohex-1-ene carboxylate in autoclaved controls; , cyclohexane
carboxylate in autoclaved controls; , acetate in autoclaved
controls. The data are averages ± standard deviations based on
triplicate microcosms.
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|
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DISCUSSION |
An S. aciditrophicus monoculture metabolized benzoate
to cyclohexane carboxylate, acetate, and CO2
(Table 1, equation 3). This reaction supported the growth of S. aciditrophicus, as indicated by our ability to successfully
transfer the activity and by the results of the growth yield
experiments which indicated that 6.9 g (dry weight) of cells was
made per mol of benzoate. The redox potential of the
benzoate-cyclohexane carboxylate electron pair (
244 mV) makes
benzoate reduction to cyclohexane carboxylate exergonic if hydrogen
(
410 mV), NADH (
320 mV), or reduced flavin adenine dinucleotide
(
220 mV) is the electron donor. Our results add benzoate to the
growing list of compounds, such as crotonate (2, 5, 27, 28,
31), unsaturated short-chain volatile fatty acids
(1), pyruvate, fumarate (10, 30), acetoin, acetaldehyde (7), and acetylene (23), that
support the growth of microorganisms once believed to be obligate
syntrophs. It is clear that many of these organisms have diverse modes
of metabolism. This may make assignment of physiological function based
on molecular identification methods difficult.
Fermentation of other aromatic compounds has also been reported.
Sporotomaculum hydroxybenzoicum degrades 3-hydroxybenzoate in the absence of H2-using microorganisms
(20) by using the crotonyl coenzyme A produced during
substrate degradation as an electron acceptor, which results in the
production of butyrate, acetate, and
HCO3
as end products. Karlsson
et al. (16) recently described an enrichment that is
capable of fermenting phenol by using the reducing equivalents to
reduce phenol to benzoate via reductive elimination of the hydroxyl
group. Desulfotomaculum thermobenzoicum subsp. thermosyntrophicum has been reported to ferment benzoate
(22). These recent findings suggest that fermentation, in
addition to syntrophic metabolism, must be considered a possible
mechanism for aromatic compound degradation in methanogenic systems.
The ability of S. aciditrophicus to ferment benzoate may
have ecological significance since benzoate (or benzoyl coenzyme A) is
a central intermediate in anaerobic degradation of many natural and
xenobiotic aromatic compounds. Transient accumulation of cyclohexane
carboxylate (maximum concentration, 140 µM [representing 28% of the
original substrate concentration]) was observed in methanogenic phenol
enrichments from landfill sediments (R. Jones and J. M. Suflita,
unpublished data). Also, Kleerebezem et al. (17) observed
accumulation of cyclohexane carboxylate in anaerobic sewage sludge
enrichments amended with benzoate and one of the three phthalate
isomers when methanogenesis in these enrichments was inhibited by
bromoethanesulfonic acid. This observation implies that cyclohexane
carboxylate production could be a mechanism for hydrogen removal in
anaerobic ecosystems. Benzoate reduction to cyclohexane carboxylate may
be regarded as a survival mechanism used by syntrophic microorganisms
in the absence of interspecies hydrogen transfer.
Pure cultures of S. aciditrophicus grown with benzoate
accumulated hydrogen at pressures up to 97.9 Pa, compared to the value of 2.3 Pa observed for S. aciditrophicus-M. hungatei
cocultures. The higher hydrogen pressure values observed for S. aciditrophicus pure cultures were probably responsible for the
higher final benzoate concentrations in these cultures than in a
coculture (Table 2). Previous studies showed that hydrogen levels
influence the extent of benzoate degradation in syntrophic cocultures,
with benzoate metabolism ceasing at higher thresholds in cultures
exposed to higher hydrogen levels (11, 13, 25, 32). High
levels of hydrogen inhibited benzoate fermentation by S. aciditrophicus pure cultures growing on benzoate (Fig 3) in a
manner similar to that observed in S. aciditrophicus
cocultures with a hydrogen user. The inhibition of benzoate degradation
by high hydrogen levels and the accumulation of hydrogen during
benzoate fermentation suggest that hydrogen is produced as a free
intermediate during benzoate oxidation by S. aciditrophicus
pure cultures.
S. aciditrophicus monoculture was able to metabolize
cyclohex-1-ene carboxylate. While only 1 mol of benzoate was reduced per mol of benzoate oxidized to acetate and CO2,
5 mol of cyclohex-1-ene carboxylate was needed to account for all of
the reducing equivalents produced during oxidation of 1 mol of
cyclohex-1-ene carboxylate to acetate and CO2.
Therefore, much less energy was available from cyclohex-1-ene
carboxylate fermentation than from benzoate fermentation to support
growth. Cyclohex-1-ene carboxylate fermentation stopped after only
62.7% of the initial cyclohex-1-ene carboxylate was degraded. This may
have been due to accumulation of high levels of hydrogen (839 Pa),
which may have inhibited further oxidation of cyclohex-1-ene
carboxylate to acetate and CO2. The
G' values for benzoate and cyclohex-1-ene carboxylate
metabolism observed in this study (Table 2) indicate that biological
reactions can proceed at values close to thermodynamic equilibrium
(
G' = 0 kJ/mol) rather than at the previously suggested
value,
20 kJ/mol (24).
 |
ACKNOWLEDGMENTS |
This work was supported by DOE grant DE-FG03-96-ER-20214/A003.
We thank Neil Q. Wofford and Luis A. Rios Hernandez for helpful
discussions during this work.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Botany and Microbiology, University of Oklahoma, 770 Van Vleet Oval, Norman, OK 73019. Phone: (405) 325-4321. Fax: (405) 325-7619. E-mail:
McInerney{at}ou.edu.
 |
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Applied and Environmental Microbiology, December 2001, p. 5520-5525, Vol. 67, No. 12
0099-2240/01/$04.00+0 DOI: 10.1128/AEM.67.12.5520-5525.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
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