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Applied and Environmental Microbiology, February 2001, p. 528-538, Vol. 67, No. 2
Institute of Microbiology RAS, 117811 Moscow,
Russia,1 and Kluyver Institute of
Biotechnology, Delft University of Technology, 2628 BC Delft, The
Netherlands2
Received 1 August 2000/Accepted 3 November 2000
Three kinds of alkaliphilic bacteria able to utilize thiocyanate
(CNS Thiocyanate
(N
0099-2240/01/$04.00+0 DOI: 10.1128/AEM.67.2.528-538.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Microbial Thiocyanate Utilization under Highly
Alkaline Conditions
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ABSTRACT
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
) at pH 10 were found in highly alkaline soda lake
sediments and soda soils. The first group included obligate
heterotrophs that utilized thiocyanate as a nitrogen source while
growing at pH 10 with acetate as carbon and energy sources. Most of the
heterotrophic strains were able to oxidize sulfide and thiosulfate to
tetrathionate. The second group included obligately autotrophic
sulfur-oxidizing alkaliphiles which utilized thiocyanate nitrogen
during growth with thiosulfate as the energy source. Genetic analysis
demonstrated that both the heterotrophic and autotrophic alkaliphiles
that utilized thiocyanate as a nitrogen source were related to the previously described sulfur-oxidizing alkaliphiles belonging to the
gamma subdivision of the division Proteobacteria (the
Halomonas group for the heterotrophs and the genus
Thioalkalivibrio for autotrophs). The third group included
obligately autotrophic sulfur-oxidizing alkaliphilic bacteria able to
utilize thiocyanate as a sole source of energy. These bacteria could be
enriched on mineral medium with thiocyanate at pH 10. Growth with
thiocyanate was usually much slower than growth with thiosulfate,
although the biomass yield on thiocyanate was higher. Of the four
strains isolated, the three vibrio-shaped strains were genetically
closely related to the previously described sulfur-oxidizing
alkaliphiles belonging to the genus Thioalkalivibrio. The
rod-shaped isolate differed from the other isolates by its ability to
accumulate large amounts of elemental sulfur inside its cells and by
its ability to oxidize carbon disulfide. Despite its low DNA homology
with and substantial phenotypic differences from the vibrio-shaped
strains, this isolate also belonged to the genus
Thioalkalivibrio according to a phylogenetic analysis. The
heterotrophic and autotrophic alkaliphiles that grew with thiocyanate
as an N source possessed a relatively high level of cyanase activity
which converted cyanate (CNO
) to ammonia and
CO2. On the other hand, cyanase activity either was absent
or was present at very low levels in the autotrophic strains grown on
thiocyanate as the sole energy and N source. As a result, large amounts
of cyanate were found to accumulate in the media during utilization of
thiocyanate at pH 10 in batch and thiocyanate-limited continuous
cultures. This is a first direct proof of a "cyanate pathway" in
pure cultures of thiocyanate-degrading bacteria. Since it is relatively
stable under alkaline conditions, cyanate is likely to play a role as
an N buffer that keeps the alkaliphilic bacteria safe from inhibition
by free ammonia, which otherwise would reach toxic levels during
dissimilatory degradation of thiocyanate.
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INTRODUCTION
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
C---S
) is a C1 sulfur species which can
be produced both as a natural compound (mainly in biological cyanide detoxification processes) and as a waste product, largely by coke and
metal plants (23, 46). Microorganisms can utilize
thiocyanate as an energy, carbon, nitrogen, or sulfur source after it
is hydrolyzed to sulfide, ammonia, and CO2. Like
degradation of other C1 sulfur compounds, CNS
degradation requires the primary action of a specific enzyme(s) to
release the sulfan atom for further microbial oxidation (23, 35). Currently, two distinct pathways of microbial degradation of thiocyanate are recognized, and either H2S or
NH3 is the first product. For the autotrophic
thiocyanate-oxidizing bacterium Thiobacillus thioparus
(formerly known as Thiobacillus thiocyanooxidans) it has
been postulated that thiocyanate is degraded via cyanate
(N
C-O
), which is converted to ammonia and
CO2 by the specific enzyme cyanase (13, 47).
The liberated sulfide is utilized as an electron donor and energy
source:
(1)
(2)
[HCO3
(3)
]
Apparently, the first enzyme in this pathway should be able to
break the C---S bond. Nothing is known yet about the identity of such
an enzyme(s). Moreover, no direct proof of production of cyanate as an
intermediate during bacterial thiocyanate degradation has been obtained
for this autotrophic bacterium so far. To our knowledge, formation of
cyanate from thiocyanate has been observed only once in a mixed
bacterial population from thiocyanate-degrading sludge
(14). Another strain of T. thioparus degrades
thiocyanate via carbonyl sulfide (O==C==S) by using the specific
enzyme thiocyanate hydrolase, which has substantial homology to nitrile
hydratase (19, 21, 22). Such homology is hardly
surprising, assuming that both enzymes break the nitrile bond (N
C).
The COS produced is hydrolyzed to sulfide and CO2 (the
enzymology of this reaction remains to be investigated), and sulfide is
eventually oxidized to sulfate:
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(4) |
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(5) |
to sulfide proceeds through the
same pathway (i.e., via COS).
Oxidation of thiocyanate to sulfate, ammonia, and CO2 yields eight electrons. Among the neutrophilic sulfur-oxidizing bacteria, the ability to grow with thiocyanate as an electron donor for energy generation and CO2 fixation is limited to a few strains of T. thioparus (7, 12, 13, 20, 32, 33, 47) and Thiobacillus denitrificans (7). The ability to utilize thiocyanate as an electron donor has recently been claimed for a newly described Paracoccus species, Paracoccus thiocyanatus (18), but it is difficult to analyze the evidence because no actual data for growth and oxidation kinetics were provided in the paper. The potential for active thiocyanate degradation has also been described for two bacterial consortia consisting of Pseudomonas and Acinetobacter species (3) and of Pseudomonas and Bacillus species (30). Both of these consortia were able to grow on thiocyanate mineral media at neutral pH values and produced sulfate, like the T. thioparus strains. However, no evidence concerning the ability of such consortia to grow autotrophically with other reduced sulfur compounds was presented. Although the possible existence of autotrophic thiocyanate specialists which utilize only thiocyanate as an energy source cannot be ruled out, so far all pure cultures of thiocyanate autotrophs are represented by sulfur bacteria able to grow on other reduced inorganic sulfur compounds. Therefore, whether the thiocyanate-oxidizing consortia may have contained a fraction of sulfur-oxidizing autotrophs morphologically indistinguishable from the heterotrophic components is an interesting question.
In addition to being oxidized for energy transduction purposes,
CNS
can be metabolized as a nitrogen source. Several
neutrophilic heterotrophic bacteria (Arthrobacter sp.,
Pseudomonas spp., Methylobacterium thiocyanatum)
able to utilize the nitrogen atom from thiocyanate were isolated from
different sources which may have contained thiocyanate (2, 11,
28, 41, 42, 45). It has been suggested that such bacteria employ
the same primary thiocyanate degradation pathways as autotrophs (e.g.,
either cyanate pathways or COS pathways), but again, no direct proof of
accumulation of these intermediates has been presented. In these cases,
ammonium produced from thiocyanate is utilized as the nitrogen source, while the reduced sulfur can be utilized as a sulfur source but not as
the energy source.
The thiocyanate-oxidizing T. thioparus strains are likely to
be able to utilize the nitrogen of thiocyanate as an N source during
growth solely on CNS
. However, there is no evidence
concerning whether autotrophic sulfur bacteria or any other
chemolithoautotrophs are able to assimilate thiocyanate nitrogen but
are not able to use it as an electron donor, as is the case for the
heterotrophic thiocyanate-utilizing bacteria.
CNS
-containing wastewaters can be treated by acclimated
bacterial sludge containing a high density of T. thioparus-like thiocyanate-oxidizing autotrophs (3-5, 15,
16, 32) or heterotrophs if an alternative carbon source is
available (17). Such biosystems proved to be able to
remove millimolar amounts of CNS
at neutral or slightly
alkaline pH values. The possibility of bioremoval of thiocyanate under
highly alkaline conditions was not investigated.
This study demonstrated that thiocyanate can be used as the nitrogen source and as the energy source under highly alkaline conditions by alkaliphilic obligately organoheterotrophic and obligately lithoautotrophic sulfur-oxidizing bacteria, respectively, isolated from natural alkaline environments, such as those encountered in soda lakes.
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MATERIALS AND METHODS |
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Samples. Four composite samples were used for enrichment of thiocyanate-degrading alkaliphiles. Two soil samples were composed of 8 to 10 subsamples of soda solonchak soils collected near soda lakes in Burjatia (southeast Siberia) and Kenya (East African Rift Valley). The other two samples were composed of five to eight sediment subsamples collected from soda lakes in Burjatia and Kenya. The pH values of the subsamples varied from 9.7 to 11.0, and the salt contents ranged from 0.05 to 20% (wt/vol).
Bacterial strains.
Pure cultures of alkaliphilic
heterotrophic and chemolithoautotrophic sulfur-oxidizing bacteria
described previously (36-40) were tested for the ability
to utilize CNS
as a nitrogen or energy source. The
heterotrophs used are members of the Halomonas-Deleya
cluster in the gamma subdivision of the division
Proteobacteria (gamma-Proteobacteria). The
autotrophs belong to the new genera Thioalkalimicrobium and
Thioalkalivibrio, also in the
gamma-Proteobacteria. Some of the properties of the alkaliphilic autotrophs are shown in Table
1.
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Media and culture conditions.
Mineral base medium containing
0.6 M total Na+ as sodium carbonates and sodium chloride
(pH 10) (38) was used in all growth experiments. It
contained (per liter) 21 g of sodium carbonate, 9 g of sodium
bicarbonate, 5 g of NaCl, 1 g of
K2HPO4, and 0.5 g of KNO3. A
trace elements solution (31) (2 ml/liter) and Mg salts
(0.5 mM) were added after sterilization. KCNS, sodium thiosulfate, and
sodium acetate were also supplied after sterilization from filter-sterilized 2 M stock solutions. CNS
was fairly
stable under the alkaline conditions used; no chemical decomposition
was observed during more than 1 month of incubation of uninoculated
medium at pH 9.8 to 10.2. Media with higher salt contents (up to 4 M
Na+; pH 10.0 to 10.1) were prepared by proportionally
increasing the concentration of sodium carbonates.
Enrichment procedure and isolation of pure cultures.
Heterotrophic alkaliphiles utilizing CNS
as a sole
nitrogen source were enriched on a mineral base medium (pH 10.0)
supplemented with 20 mM acetate as the carbon and energy source and 5 mM KCNS. Chemolithoautotrophic alkaliphilic bacteria utilizing the
nitrogen from KCNS were enriched on the same medium, except that the
acetate was replaced by 40 mM thiosulfate. After complete disappearance of CNS
, several subcultures (1:100 dilution) were made.
The cultures exhibiting stable thiocyanate disappearance were plated
onto solid medium having the same composition, and different colonies
were then isolated and checked for the ability to use thiocyanate in liquid culture. Media without a nitrogen source were used as controls.
as an electron donor were enriched on mineral
base medium supplemented with 10 mM KCNS as the sole energy and
nitrogen source. The same medium was suitable for growth of pure
cultures. However, during isolation of pure cultures, it was found that
most of the enrichment cultures were not able to form colonies on
thiocyanate mineral medium. When thiosulfate (20 mM) was added together
with 10 mM thiocyanate, several types of sulfur-producing colonies
developed after 2 weeks of incubation. The smallest colonies usually
were colonies of autotrophs able to grow on thiocyanate, and larger colonies were colonies of organisms able to use thiocyanate only as a
nitrogen source.
Thiocyanate-oxidizing autotrophic strains were grown in
thiocyanate-limited continuous cultures by using 1.5-liter laboratory fermentors equipped with pH and pO2 probes (Applicon,
Schiedam, The Netherlands). The pH was controlled at 10.0, and the
dissolved oxygen content was 50% of air saturation. The final medium
composition was the same as that used for batch cultivation, and the
final CNS
concentrations were 6 to 13 mM as specified below.
Oxygen uptake experiments.
Cells of autotrophic
thiocyanate-oxidizing alkaliphiles were obtained from the cultures
grown at pH 10.0 with thiocyanate or thiosulfate as the electron donor.
After centrifugation, the cells were washed and resuspended at a
protein concentration of about 10 mg ml
1 in sodium
carbonate buffer (pH 10.0) (see below). The respiration activity was
tested at pH values of 6.0 to 11.5 in buffers containing 0.6 M total
Na+ and 50 mM KCl. For pH 6 to 8, 0.1 M HEPES-NaOH-NaCl
was used; for pH 8.2, freshly prepared NaHCO3 was used; and
for pH 9 to 11.5, a combination of Na2CO3 and
NaHCO3 was used. The carbonate dependence of respiration
was examined by using 0.1 M Tris-HCl-0.6 M NaCl at pH 9 to 10. The
respiration rates were measured in a 5-ml thermostat-equipped chamber
mounted on a magnetic stirrer and fitted with a Clark type of dissolved
oxygen probe (Yellow Spring Instruments Co., Yellow Springs, Ohio).
Stock solutions of sodium sulfide, polysulfide
(S62
; prepared by autoclaving a 0.2 M sodium
sulfide solution with a large excess of powdered sulfur), and sulfite
were prepared anaerobically in 0.1 M Tris-HCl with 5 mM EDTA to prevent
autooxidation and were introduced into the chamber at final
concentrations of 25 to 50 µM. Elemental sulfur was added from a
saturated solution in acetone at a final concentration of 70 µM.
CS2 was added from a concentrated ethanol solution at final
concentrations of 0.05 to 2 mM. COS, methane thiole
(CH3SH), and dimethyl sulfide
[(CH3)2S] were supplied as saturated water
solutions at a final concentration of 100 µM. Thiosulfate and
tetrathionate were added at final concentrations of 50 to 200 µM from
freshly prepared concentrated stock solutions in water. Kinetic
parameters (Vmax and Ks)
were calculated from V-[S] plots.
Experiments with washed cells.
The kinetics of degradation
of various substrates by washed cells obtained either from batch
cultures or from chemostat cultures was studied by using 10-ml serum
bottles containing 2 ml of suspension, in which the cell protein
concentration ranged from 0.1 to 1 mg ml
1. Anaerobic
experiments were conducted after removal of oxygen with evacuation and
argon flushing (five cycles). When CS2 (2 mM) and COS (2 mM) were used as substrates, gray butyl rubber stoppers were used
instead of black stoppers.
Analysis. Thiocyanate was analyzed colorimetrically as ferric thiocyanate (34). The same method was employed to determine the elemental sulfur content after extraction with acetone and cyanolysis. Thiosulfate, tetrathionate, and trithionate contents were measured by cyanolysis (24). Sulfate content was measured by a turbidimetric method (6). Sulfide content was determined as described by Trüper and Schlegel (43) after precipitation as ZnS. NH4+ content was measured by a phenol-hypochlorite colorimetric procedure described by Weatherburn (44). Cell protein content was analyzed by the Lowry method. When elemental sulfur was produced, it was removed by extraction with acetone prior to alkaline digestion of the cell pellet for the protein assay.
Cyanate ion (OCN
) content was routinely measured as
NH4+ after acidification of the solutions to pH
2 to 3 with 6 N HCl and subsequent heating in boiling water for 1 min.
This procedure gave 95 to 97% recovery of pure cyanate added to
standard sodium carbonate-containing media at pH 8 to 10. Final
identification and quantitative measurements of cyanate in culture
supernatants were performed by using a colorimetric reaction with
anthranilic acid as described by Dorr and Knowles (9). The
spectrum of the resulting complex (quinazoline-2,4-dione) was recorded
with an HP 8453 UV-visible diode array spectrophotometer
(Hewlett-Packard, Amsterdam, The Netherlands). Pure cyanate added to
the sodium carbonate-containing media used for cultivation of the
alkaliphilic bacteria and culture supernatants obtained after
thiocyanate decomposition by autotrophic alkaliphiles gave products
with identical spectral properties (absorption maximum at 310 nm).
Cyanase activity was measured with cell extracts obtained by
sonification of washed cell suspensions in 0.5 M sodium bicarbonate buffer (pH 8.2). Incubation was started by adding a freshly prepared 2 mM potassium cyanate solution, and production of
NH3-NH4+ was monitored at 5- to
10-min intervals.
Sodium dodecyl sulfate-polyacrylamide gel electrophoresis of the total
cell protein was used to visualize expression of specific enzymes
responsible for thiocyanate degradation. Autotrophic and heterotrophic
cultures were grown at pH 10 with or without thiocyanate, and cells
were collected, washed, and sonicated. The extracts were treated and
analyzed by a standard procedure (26) by using 10%
(wt/vol) polyacrylamide gels.
Electron microscopy. For total-cell preparations, washed cells were directly fixed with formaldehyde (final concentration, 2.5%) in liquid medium and then positively stained with 1% phosphotungstic acid. Samples used for ultrathin sectioning were centrifuged, washed and resuspended in fresh 0.6 M NaHCO3 (pH 8), fixed with 1% (final concentration) OsO4 for 12 h at 4°C, dehydrated, and embedded in resin. Thin sections were stained with uranyl acetate and lead citrate. To detect intracellular accumulation of elemental sulfur, cells were sedimented, stained with a solution containing 2% AgNO3 and 2% glutaraldehyde for 10 h, and then fixed with OsO4. Postsectional staining was omitted in this case.
Genetic analysis. Isolation of DNA, determination of the G+C contents of DNA preparations, and DNA-DNA hybridization were performed as described by Marmur (27) and De Ley et al. (8).
Amplification and sequencing of 16S rRNA genes. For amplification and sequencing of 16S rRNA genes, DNA was obtained by standard phenol-chloroform extraction. The 16S rRNA genes were selectively amplified by using primers 5'-AGAGTTTGATCCTGGCTCAG-3' (forward) and 5'-TACGGTTACCTTGTTACGACTT-3' (reverse). PCR products were purified from low-melting-point agarose by using a Wizard PCR-Prep kit (Promega) according to the manufacturer's instructions. Almost complete sequencing (1,400 to 1,450 nucleotides) was performed by using a Silver Sequencing kit (Promega) according to the manufacturer's instructions, with minor modifications.
16S ribosomal DNA sequence analysis. The sequences were aligned manually with sequences obtained from the database consisting of small-subunit rRNAs collected from the EMBL international nucleotide sequence library. The sequences were compared with the sequences of members of the Proteobacteria. Regions that were not sequenced in one or more reference organisms were omitted from the analyses. Pairwise evolutionary distances (expressed in estimated number of changes per 100 nucleotides) were computed by using the method of Jukes and Cantor. A phylogenetic tree was constructed by the neighbor-joining method. Bootstrap analysis (100 replications) was used to validate the reproducibility of the branching pattern of trees.
Nucleotide sequence accession numbers. 16S ribosomal DNA sequence data for strains ARh 1 and ARh 2 have been deposited in the EMBL and GenBank databases under accession numbers AF151432 and AF302081, respectively.
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RESULTS |
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CNS
uptake in pure cultures of alkaliphilic
sulfur-oxidizing bacteria.
Twenty-five strains of heterotrophic
tetrathionate-forming alkaliphilic bacteria and 30 strains of
obligately autotrophic sulfur-oxidizing alkaliphilic bacteria isolated
previously from alkaline environments (35-39) were tested
to determine their abilities to use thiocyanate as a sole source of
nitrogen while they were growing with acetate and with thiosulfate,
respectively, as the energy source.
was consumed per 40 mM acetate. This ratio is within the correct order of magnitude that
would be expected to be consumed for a normal bacterial biomass N
content, assuming that the molar cell composition is
CHON0.15 and that the C yield on acetate is about 35%.
None of the previously isolated strains of alkaliphilic autotrophic
sulfur bacteria belonging to the genera Thioalkalimicrobium and Thioalkalivibrio were able to grow with thiocyanate as
the energy and nitrogen source. Surprisingly, however, most of them grew well with thiosulfate as the energy source and thiocyanate as the
N source instead of nitrate or NH3. Positive results were obtained with 7 of 10 Thioalkalimicrobium strains and with
16 of 20 Thioalkalivibrio representatives. The maximum
amount of thiocyanate consumed was around 1.5 mM; again, given the
lower yield on thiosulfate, the ratio between thiocyanate and
thiosulfate was within the correct order of magnitude that would
account for the N requirement for biomass formation. The
Thioalkalivibrio strains consumed 1 mmol of
CNS
per 24 mmol of thiosulfate oxidized, and the
Thioalkalimicrobium strains needed twice as much thiosulfate
because of their 1.5- to 1.8-fold-lower molar yield on thiosulfate. To
obtain more specialized thiocyanate-utilizing alkaliphiles, direct
enrichments with thiocyanate as the only nitrogen and/or energy source
were prepared by using inocula from highly alkaline soda environments.
Enrichment and isolation of alkaliphilic bacteria utilizing
CNS
as the nitrogen source. (i) Heterotrophic
alkaliphiles.
Incubation of samples composed of subsamples of the
Kenyan soda lake sediments and subsamples of the Kenyan and Siberian
soda soils with 40 mM acetate and 5 mM thiocyanate at pH 10.0 resulted in complete disappearance of CNS
within 2 weeks. No
consumption of thiocyanate was detected in cultures inoculated with
composite samples obtained from the Siberian soda lake sediments.
Plating of the cultures obtained after several successive passages in
liquid medium resulted in domination by one or two morphological colony
types in all three enrichments. Finally, we obtained five pure cultures
(strains AGSCN 1 through AGSCN 5) that were able to utilize
CNS
as a nitrogen source while growing with acetate at pH 10.
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concentration did not
inhibit utilization of the latter compound as a nitrogen source.
Ammonia prevented CNS
utilization completely without
influencing the growth yield. Under anaerobic conditions in the
presence of nitrate or nitrite as an electron acceptor,
CNS
consumption was inhibited. In contrast, when
N2O was the electron acceptor, cultures consumed
CNS
with the same efficiency as was observed for aerobic
growth or CNS
.
(ii) Obligately autotrophic sulfur-oxidizing alkaliphiles using
CNS
as the N source.
During incubation of the
composite soda lake samples with thiocyanate as the sole source of
energy and nitrogen at pH 10, two types of obligately lithoautotrophic
sulfur-oxidizing alkaliphiles were enriched. One type was bacteria able
to utilize thiocyanate as the N source during growth with thiosulfate
as the energy source at pH 10. The other type was bacteria able to
utilize thiocyanate as both the energy source and the nitrogen source
(see below).
was
yellowish. The yellow pigment could be extracted with acetone and had
absorption maxima at 397, 418, and 441 nm; these properties are similar
to the properties of a specific subgroup of previously isolated strains
of obligately autotrophic alkaliphilic sulfur bacteria belonging to the
genus Thioalkalivibrio (38) which are unique
because of their ability to grow at concentrations of sodium carbonate
up to the saturation concentration. A special test confirmed that
strain ALRh was similar to such strains in that it was able to grow in
the presence of up to 4 M Na+ as sodium carbonate at pH 10. DNA-DNA hybridization with five reference strains of the genus
Thioalkalivibrio demonstrated that strain ALRh is indeed
specifically related to the yellow extremely natronotolerant members of
this genus (Table 3). This strain has
been deposited in the Deutsche Sammlung von Mikroorganismen und
Zellkulturen (Braunschweig, Germany) under accession number DSM 13533.
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or ammonia as the N source. Much slower growth and
heavy sulfur production were observed when nitrate was the N source.
CNS
was consumed as the organism grew. After growth
ceased, a small additional amount of thiocyanate was consumed, so that
1 mmol of CNS
was consumed per 13 to 15 mmol of
thiosulfate oxidized. Assuming the maximal growth yield of ALRh (5.5 mg
of protein
0.07 mmol of N/mmol of thiosulfate), the molar
nitrogen demand should be approximately 1:14. Similar to thiocyanate
consumption by the heterotrophic alkaliphiles, thiocyanate consumption
in cultures and by washed cells of this autotroph was almost completely
inhibited by the presence of ammonia at millimolar concentrations, and
neither ammonia nor cyanate could be detected as an intermediate of
thiocyanate degradation.
Alkaliphilic chemolithoautotrophic thiocyanate-oxidizing sulfur bacteria. (i) Enrichment and isolation of pure cultures. Chemolithotrophic alkaliphilic bacteria able to grow solely on thiocyanate were enriched on mineral soda medium (pH 10.0) supplemented with 10 to 12 mM thiocyanate as the electron donor and source of nitrogen. At higher thiocyanate concentrations (20 to 40 mM) enrichments were negative. Positive enrichments were obtained with the sediments from Kenyan and Siberian soda lakes but not from the soil samples. The Kenyan culture developed more rapidly and consumed 11 mM thiocyanate within 10 days. The Siberian culture started to grow only after a long lag phase and consumed 10 mM thiocyanate within 18 days. After several 1:100 transfers, two stable enrichment cultures were obtained. Both the Kenyan and Siberian cultures included large nonmotile rod-shaped cells in which sulfur was deposited and two or three types of small, actively moving vibrios which were numerically dominant in subsequent serial dilutions on mineral medium with thiocyanate.
Pure cultures were isolated by using alkaline mineral agar with 10 mM CNS
or with 20 mM thiosulfate and 10 mM
CNS
. Only the vibrio-shaped bacteria formed tiny
transparent colonies on the CNS
agar after about 2 weeks
of incubation. They also formed white refractile colonies containing
sulfur on the thiosulfate-CNS
agar; these colonies
gradually turned transparent, and some of them became yellowish. The
large nonmotile rods observed in the enrichment cultures were not able
to form colonies on the CNS
agar. They grew very slowly
on the thiosulfate-CNS
agar, forming small, snow white,
sulfur-containing colonies. However, as the numbers of these organisms
were always much lower than the numbers of vibrios in the Siberian
culture, only the Kenyan enrichment was suitable for isolating this
bacterium in pure culture. Overall, we isolated three vibrio-shaped and
one rod-shaped obligately chemolithoautotrophic bacteria able to grow solely on thiocyanate at pH 10.0 (Table
4).
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(ii) Characteristics of growth of strain ARh 1 on thiocyanate.
Interestingly, strain ARh 1 grew faster with thiocyanate at pH 10.0 than with thiosulfate. A small amount of elemental sulfur, mostly
intracellular, was produced during the active thiocyanate consumption
phase. In the stationary phase, elemental sulfur disappeared. At this
point about 90% of the thiocyanate sulfur was converted to sulfate.
The bacterium was able to grow at initial thiocyanate concentrations of
up to 30 mM but utilized no more than 10 to 15 mM. During growth on
thiosulfate (with NH3 as the N source), strain ARh 1 produced much more elemental sulfur during the initial growth phase
than it produced with thiocyanate. When most of the thiosulfate was
consumed, elemental sulfur began to disappear concomitant with a more
rapid increase in biomass. The maximum specific growth rate and the
growth yield obtained with thiosulfate were lower than the values
obtained in thiocyanate-grown cultures (Table
5). Stable growth in continuous cultures
at pH 10.1 was achieved only with low influent thiocyanate
concentrations (5 to 6 mM). The reason for such behavior is discussed
below. The maximum specific growth rate obtained with low thiocyanate
concentrations in chemostats was twofold higher than the maximum
specific growth rate observed in batch cultures (Table 5). With 6 mM
thiocyanate and a dilution rate of 0.09 h
1, the cultures
started to produce intracellular sulfur (2 to 3 mM) but still oxidized
all of the thiocyanate. Washout began at dilution rates greater than
0.11 h
1.
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- and thiosulfate-grown cells oxidized sulfide most
actively (Table 6). Thiosulfate and
polysulfide were oxidized less actively. Elemental sulfur was a very
poor substrate. Tetrathionate, sulfite, formate, and dimethyl sulfide
were not oxidized. In thiocyanate-grown cells the stoichiometry of
oxygen consumption with all of the substrates corresponded to oxidation
to the level of elemental sulfur, which accumulated in the respiration
chamber when excessive substrate was supplied. Thiosulfate-grown cells
oxidized the substrates to a mixture of sulfur and sulfate. The
affinity constants for CNS
,
S2O32
, HS
, and
CS2, as measured with respiring cells at pH 10, were 25, 7, 5, and 350 µM, respectively. Strain ARh 1 exhibited a pH activity profile typical of alkaliphiles, with an optimum pH between 9.0 and
10.0. The optimum pH for thiosulfate oxidation was lower than that for
the other substrates. Respiratory activity with all sulfur substrates
at pH values lower than 7.5 was negligible. The upper pH limit for
respiration was pH 11 to 11.5. Without any salt, the cells lysed
immediately, and activity totally stopped. The presence of 0.4 to 0.5 M
total Na+ was sufficient for maximal respiration activity;
1 M NaCl inhibited the thiocyanate oxidation activity by 50%, and
complete inhibition occurred at 2 M NaCl. NH3 at
concentrations up to 10 mM did not influence the rate of
thiocyanate-dependent oxygen consumption at pH 10.0. CN
completely blocked CNS
oxidation at a concentration of
100 µM.
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anaerobically at
pH 10 at a rate of 5 to 7 nmol of HS
mg of
protein
1 min
1. It was impossible, however,
to demonstrate any intermediate COS accumulation, apparently because of
rapid spontaneous hydrolysis of this compound in alkaline carbonate
media. COS was much more stable in HEPES-NaCl buffer at pH 8. When this
buffer was used, production of HS
from COS was observed
under anaerobic conditions in the presence of washed cells of strain
ARh 1 (8 to 10 nmol of HS
mg of protein
1
min
1, minus spontaneous rate in the absence of cells) but
not in the presence of the cells of strain ARh 2 or ARh 5. Overall,
these data suggest that strain ARh 1 is capable of degrading
CS2 via primary hydrolysis to COS and then to
HS
.
(iii) Characteristics of growth of the vibrio-shaped strains on
thiocyanate.
Unlike rod-shaped strain ARh 1, the vibrio-shaped
strains grew much more slowly with thiocyanate than with thiosulfate
(Table 5). On the other hand, under certain conditions, the vibrio
cultures utilized two to three times more thiocyanate than ARh 1 utilized. Maximum thiocyanate consumption was observed in cultures of
strains ARh 2 and ARh 3 cultivated in the fed-batch mode. Neither of
the vibrio strains produced elemental sulfur or other intermediate sulfur compounds during growth with thiocyanate. The sulfur from thiocyanate was almost quantitatively converted to sulfate. The growth
efficiency of the alkaliphilic vibrios with thiocyanate was lower than
that of strain ARh 1 (Table 5). Strain ARh 4 differed from the other
ARh strains by its ability to grow fast on a thiosulfate-thiocyanate mixture. In thiocyanate-limited continuous cultures, stable growth of
strain ARh 4 was achieved with 11 mM thiocyanate at pH 10.2. At a
higher influent thiocyanate concentration (15 mM) the culture began to
wash out at very low dilution rates (<0.02 h
1).
-oxidizing activity of strain ARh 1, the
CNS
-oxidizing activity of the vibrios was inducible
(e.g., present in cells grown with thiocyanate as an energy source),
but the maximum values were 1.5 to 2 times higher. In contrast to ARh
1, the vibrio strains were not able to oxidize CS2. On the
other hand, they exhibited 5- to 10-fold-greater elemental
sulfur-oxidizing activity than ARh 1 and also could use tetrathionate
(Table 6). The stoichiometry of oxygen consumption with all of the
oxidized sulfur compounds corresponded to complete oxidation of the
compounds to sulfate. As for other alkaliphilic sulfur bacteria,
sulfide and polysulfide were the most favorable substrates for the
vibrio strains. The oxidation of sulfide and polysulfide was always
biphasic. Usually, a first, short, high-rate stage was followed by a
long, low-rate oxygen consumption stage. Such kinetics may be explained
by initial rapid oxidation of HS
to zero-valence sulfur
and subsequent slower oxidation of the latter to sulfate. Cells of
vibrio strains ARh 2 and ARh 5 grown in thiocyanate-limited continuous
cultures exhibited higher thiocyanate-oxidizing activities (30 to 40%)
than cells grown in batch cultures. Also interesting was the finding
that in contrast to batch-grown cells, cells from thiocyanate-limited
chemostat cultures exhibited much lower thiosulfate-oxidizing
activities. Strain ARh 2 even lost its thiosulfate-oxidizing capacity
completely. On the other hand, the sulfide-oxidizing capacity remained
high independent of the sulfur substrate used. The pH profiles for
oxidation of sulfur compounds by washed cells of all three vibrio
strains were typical for alkaliphiles, with an optimum pH around pH
10.0 and limits at pH 7.0 and 11 to 11.5. The pH profile for
thiocyanate oxidation was narrower than those for the other compounds,
with sharp decreases at pH values less than 9 and more than 10.
Thiocyanate degradation pathway in alkaliphilic bacteria. (i)
Formation of cyanate from thiocyanate.
We indicate above that the
alkaliphilic strains which utilized thiocyanate as an N source did not
excrete any intermediate nitrogen compounds into the medium and that
all of the thiocyanate nitrogen was apparently used for assimilation.
In contrast, the N balance in cultures and cell suspensions of all ARh
strains grown with thiocyanate as the electron donor was far from
complete. A maximum of only about 20% of the converted thiocyanate
could be accounted for by assimilation plus excreted ammonia. Part of the ammonia, of course, was lost by volatalization from the liquid at
pH 10. However, special experiments with sterile media demonstrated that stripping of NH3 could have resulted in no more than
10 to 15% of the nitrogen loss that was not accounted for. Therefore, production of an intermediate nitrogen compound during thiocyanate dissimilation by alkaliphilic autotrophs had to be assumed. The most
probable candidate species is cyanate (CNO
), which has
been suggested as an intermediate in one of the microbial thiocyanate
degradation pathways (see reaction 1 above). Cyanate is known to be
reasonably stable at high pH values but decomposes rapidly under highly
acidic conditions (see reaction 3 above). Indeed, acidification to pH 2 to 3 by HCl allowed almost complete recovery of nitrogen as ammonium in
the supernatants after degradation of thiocyanate by the ARh strains.
Pure cyanate added to a sterile carbonate buffer and to media reacted
in a similar way, instantly decomposing to ammonium after
acidification. A specific colorimetric reaction with anthranilic acid
confirmed the identity of the intermediate N compound as cyanate in all
samples of culture supernatants with substantial N disbalance (see
above). The amounts of cyanate formed during utilization of thiocyanate
by cultures and cell suspensions of ARh strains are shown in Table
7. Additional tests confirmed that in
carbonate-based media at pH 10 to 10.5 spontaneous decomposition of
cyanate to ammonia was relatively slow (5 to 10% with 10 mM cyanate at
30°C within 24 h).
|
(ii) Ammonia toxicity at pH 10.
The clear evidence that
cyanate rather than ammonia accumulates during thiocyanate
dissimilation by autotrophic alkaliphiles, in contrast to neutrophilic
species, should have some explanations. One of the explanations could
be that NH3, which is absolutely dominant over
NH4+ at pH 10, is toxic and therefore
accumulation of NH3 should somehow be avoided. For example,
the sulfur-oxidizing alkaliphiles belonging to the genera
Thioalkalimicrobium and Thioalkalivibrio were
unable to grow at pH 10 in the presence of NH3 at
concentrations higher than 2 to 3 mM (39). Therefore, the
toxicity of ammonia for growth and activity of thiocyanate-utilizing
alkaliphiles was tested at pH 10. While there was no inhibition of
respiratory activity by NH3 or CNO
at
concentrations up to 20 mM, ammonia inhibited growth of the autotrophic
strains at relatively low concentrations (2 to 3 mM). Strain ARh 1 was
the most sensitive ARh strain. The thiocyanate-oxidizing ARh strains
were slightly more sensitive to ammonia than the heterotrophic alkaliphile AGCNS 1 was.
(iii) Cyanase activity.
The activities of cyanase (the enzyme
which splits cyanate into ammonia and CO2 [see reaction 3 above]) were measured in cell extracts prepared from cells of
different thiocyanate-utilizing alkaliphilic strains grown under
different conditions. Considerably cyanase activity was found in (i)
heterotrophic strain AGCNS 1 grown with thiocyanate as the N source and
(ii) autotrophic strains ALRh and ARh 4 grown with thiosulfate as the
energy source and ammonia, nitrate, or thiocyanate as the N source.
Although constitutive, the cyanase activity in strain ALRh markedly
increased in the presence of thiocyanate. In contrast, cyanase activity
was undetectable in thiocyanate-dissimilating strains ARh 1, ARh 2, and
ARh 3 and was extremely low in ARh 4 grown with thiocyanate as the
energy source (Table 8). The activity was
maximal at pH 8 and was HCO3
dependent
(Ks = 2 mM). At pH 7 and 10 the activities were
40 and 88% of the maximal activity, respectively.
|
(iv) Thiocyanate dissimilation.
Previous experiments
demonstrated that the primary reaction in thiocyanate dissimilation by
the alkaliphilic autotrophs should be hydrolysis to cyanate and
HS
. In the neutrophilic T. thioparus strain,
which may use the same thiocyanate degradation pathway, a substantial
rate of sulfide production was observed when the cells were incubated
with thiocyanate under anaerobic conditions. However, in our
experiments performed with washed cells and cell extracts of the
alkaliphilic ARh strains at pH 8.0 to 10.5, anaerobic thiocyanate
degradation could not be detected. When ARh 1 and ARh 4 cells were
crushed, the thiocyanate degradation activity decreased significantly.
Nevertheless, it was still detectable after prolonged incubation (100 to 160 nmol mg of protein
1 h
1); 80 to 90%
of this activity was recovered in the soluble fractions of the extracts
after removal of the membranes by ultracentrifugation at
180,000 × g for 1 h. Thiocyanate was
quantitatively converted to cyanate and elemental sulfur. As in
whole-cell experiments, no thiocyanate degradation was observed under
anaerobic conditions.
| |
DISCUSSION |
|---|
|
|
|---|
The results obtained in this study demonstrated for the first time that active thiocyanate biodegradation may occur under highly alkaline conditions. Thiocyanate can be used by heterotrophic and autotrophic alkaliphilic bacteria either as a nitrogen source or as an electron donor and energy source. Thiocyanate utilization either by pure bacterial cultures or by mixed populations in activated sludge has never been observed at pH values above 8.5. In fact, pH values higher than 8.0 negatively influenced thiocyanate degradation and growth of the neutrophilic bacteria (14, 25, 29), probably because of increased formation of undissociated NH3 instead of NH4+.
A substantial number of the previously isolated pure cultures of
alkaliphilic sulfur-oxidizing autotrophic bacteria were able to utilize
thiocyanate as a nitrogen source. While for heterotrophic bacteria this
ability has been demonstrated previously more than once, no
chemolithoautotrophs were known to grow with thiocyanate as a nitrogen
source except for the known neutrophilic thiocyanate-oxidizing sulfur
bacteria, which use thiocyanate as an electron donor and as a nitrogen
source simultaneously. This is logical because in both assimilation and
dissimilation pathways the thiocyanate molecule should first be split
into sulfide and ammonium. In contrast, it is difficult to explain why
many strains of alkaliphilic sulfur bacteria, which are able to utilize
the nitrogen moiety, cannot grow solely with thiocyanate. The only way
to obtain nitrogen from CNS
is to hydrolyze it and
release ammonia. This, in turn, means that sulfur is released
eventually as sulfide, which is a natural electron donor for the
alkaliphilic sulfur autotrophs. Perhaps CNS
is
transported inside the cells, where it cleaved to sulfide and ammonia.
Then, if the sulfide-oxidizing system is located outside the cell
membrane, difficulties with substrate oxidation might to be expected,
whereas external thiosulfate or sulfide can be oxidized easily. Strong
induction of the cyanase activity in heterotrophic (strain AGCNS 1) and
autotrophic (strain ALRh) alkaliphiles during growth with thiocyanate
as an N source could imply that they use a cyanate pathway for
thiocyanate degradation, although the absence of any observed cyanate
accumulation does not allow us to substantiate such a conclusion.
The thiocyanate-oxidizing alkaliphilic autotrophs can be enriched only
when thiocyanate is used as the sole growth substrate. The presence of
thiosulfate in addition to thiocyanate invariably resulted in
enrichment of the sulfur-oxidizing alkaliphiles that were unable to
grow with thiocyanate as an electron donor and grew faster than the
thiocyanate specialists. All four alkaliphilic thiocyanate-oxidizing
strains isolated were typical sulfur chemolithoautotrophs and were
related to the other sulfur alkaliphiles belonging to the genus
Thioalkalivibrio, which are unable to grow with thiocyanate (39). This supports the conclusion that the true electron
donor in such bacteria is sulfide and, therefore, thiocyanate-oxidizing autotrophs are also sulfur-oxidizing autotrophs. Most of the previously described thiocyanate-degrading bacteria were isolated from
thiocyanate-containing waste systems. The presence of
thiocyanate-assimilating and thiocyanate-oxidizing bacteria in natural
soda environments implies that there is a thiocyanate influx. Shallow
soda lake sediments are usually rich in decaying organic material and
reduced sulfur compounds. Perhaps thiocyanate can be formed from
CN
and reduced sulfur, like polysulfide, in a well-known
cyanolytic reaction or with thiosulfate by the action of the enzyme
rhodanese (10, 46). Alkaliphilic representatives of the
thiocyanate-oxidizing autotrophs described in this paper differed from
the neutrophilic T. thioparus strains by their ability to
grow and to oxidize thiocyanate and other sulfur compounds under highly
alkaline conditions (optimum pH, around 10) in combination with high
salt concentrations. Both previously described neutrophilic species of
thiocyanate-oxidizing sulfur autotrophs (T. thioparus and
T. denitrificans) belong to the
beta-Proteobacteria, while the alkaliphilic isolates belong to the gamma-Proteobacteria.
In contrast to strains that utilize thiocyanate as the N source, thiocyanate-oxidizing alkaliphilic autotrophs accumulated a large amount of cyanate during thiocyanate dissimilation under alkaline conditions. In fact, cyanate was the major nitrogen species in cultures of thiocyanate-grown ARh strains. This finding correlated well with the absence (ARh 1, ARh 2, ARh 3) or suppression (strain ARh 4) of cyanase activity when these bacteria grew with thiocyanate as the electron donor. The cyanate accumulation observed can be taken as the first direct proof of the involvement of the cyanate pathway biodegradation of thiocyanate by pure bacterial cultures. Thus, it seems quite sensible for alkaliphiles to use this pathway in combination with the absence of cyanase activity to prevent ammonia toxicity at highly alkaline pH values. Nevertheless, even production of cyanate as an N buffer would not save these bacteria from intoxication when high concentrations of cyanate (8 to 10 mM) accumulate, as in the case of chemostat cultures grown at pH 10 at low dilution rates with 12 to 15 mM thiocyanate. In this case the residence time is sufficiently long to allow slow, spontaneous cyanate decomposition, which releases more toxic ammonia than the culture needs for assimilation. This was probably a major reason for the observed instability of the continuous cultures compared to batch cultures of the alkaliphilic thiocyanate-oxidizing ARh strains. Stable growth was achieved only with low influent thiocyanate concentrations (<10 mM), which allowed us to decrease the liquid residence time. In this case the steady-state NH3 concentration was kept below the toxicity level (0.1 to 1.3 mM).
Two specific enzyme activities and corresponding proteins associated with growth with thiocyanate were detected in alkaliphilic bacteria. The cyanase activity, detected in both thiocyanate-assimilating and dissimilating strains, resembled the enzyme activity of neutrophiles in the pH optimum (pH 8.0) and bicarbonate dependency (1). However, it was much more alkalitolerant. The catalysis of the breaking of the C---S bond of thiocyanate may be related to a protein with subunit mass of about 50 kDa which was heavily expressed only in ARh strains grown with thiocyanate as the energy source. It seems likely that this protein may be different from its analogue in neutrophilic T. thioparus strains in that it needs oxygen for activity. As nothing is known yet about this type of enzymes, it would be very interesting to purify this protein from the alkaliphilic bacteria.
The ability of alkaliphilic bacteria to degrade thiocyanate under highly alkaline conditions might also be important in improving bioremoval of thiocyanate from alkaline wastewater. Such wastewater, for example, can result from gold cyanidation, in which alkaline cyanide can react with polysulfide or reactive sulfur to form a less toxic alkaline thiocyanate-containing waste, which subsequently might be treated with the alkaliphiles.
| |
ACKNOWLEDGMENTS |
|---|
This research was supported by grant NWO 047.006.018 from the Netherlands Organization for Scientific Research.
We thank B. Jones for providing the samples from Kenyan soda lakes.
| |
FOOTNOTES |
|---|
* Corresponding author. Mailing address: Kluyver Institute of Biotechnology, Delft University of Technology, Julianalaan 67, 2628 BC Delft, The Netherlands. Phone: (31-15) 2785308. Fax: (31-15) 2782355. E-mail: j.g.kuenen{at}tnw.tudelft.nl.
| |
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