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Applied and Environmental Microbiology, February 2001, p. 733-741, Vol. 67, No. 2
Division of Industrial Microbiology,
Department of Food Technology and Nutritional Sciences, Wageningen
University, Wageningen,1 and Department
of Applied Microbiology and Gene Technology, TNO Nutrition and Food
Research, Zeist,2 The Netherlands
Received 22 August 2000/Accepted 30 November 2000
A monoterpene Lactones, internal cyclic
monoesters, are ubiquitous in nature and have been identified in all
major classes of foods, including fruits, vegetables, nuts, meat, milk
products, and baked products, contributing to taste and flavor nuances
(13). The organoleptically important lactones generally
have
0099-2240/01/$04.00+0 DOI: 10.1128/AEM.67.2.733-741.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Genetic and Biochemical Characterization of a Novel
Monoterpene
-Lactone Hydrolase from Rhodococcus
erythropolis DCL14
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ABSTRACT
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
-lactone hydrolase (MLH) from Rhodococcus
erythropolis DCL14, catalyzing the ring opening of lactones
which are formed during degradation of several monocyclic monoterpenes, including carvone and menthol, was purified to apparent homogeneity. It
is a monomeric enzyme of 31 kDa that is active with
(4R)-4-isopropenyl-7-methyl-2-oxo-oxepanone and
(6R)-6-isopropenyl-3-methyl-2-oxo-oxepanone, lactones
derived from (4R)-dihydrocarvone, and
7-isopropyl-4-methyl-2-oxo-oxepanone, the lactone derived from
menthone. Both enantiomers of 4-, 5-, 6-, and 7-methyl-2-oxo-oxepanone
were converted at equal rates, suggesting that the enzyme is not
stereoselective. Maximal enzyme activity was measured at pH 9.5 and
30°C. Determination of the N-terminal amino acid sequence of purified
MLH enabled cloning of the corresponding gene by a combination of PCR
and colony screening. The gene, designated mlhB
(monoterpene lactone hydrolysis), showed up to 43% similarity to
members of the GDXG family of lipolytic enzymes. Sequencing of the
adjacent regions revealed two other open reading frames, one encoding a
protein with similarity to the short-chain dehydrogenase reductase
family and the second encoding a protein with similarity to acyl
coenzyme A dehydrogenases. Both enzymes are possibly also involved in
the monoterpene degradation pathways of this microorganism.
![]()
INTRODUCTION
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
- or
-lactone structures (five- or six-membered ring
structures), while a few are macrocyclic (29). Lactones
are intermediates in microbial degradation pathways of alicyclic
compounds (1, 5, 32) but have also been implicated in
certain microbial aromatic degradation pathways (ortho
cleavage pathways) (14, 19). The degradation of lactones
is accomplished by the activity of lactone hydrolase, which catalyzes
the hydrolysis of lactones to the corresponding hydroxy acids (Fig.
1). Lactone hydrolases are commercially
applied for the debittering of triterpenes present in citrus juices
(15) and for the production of the vitamin
D-pantothenate (T. Morikawa, K. Wada, S. Kita, K. Tuzaki, K. Sakamoto, M. Kataoka, S. Shimizu, and H. Yamada, Book Abstr. 6th Japanese-Swiss Meet. Bio/Technol., p. 34-35, 1998).

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FIG. 1.
Reaction catalyzed by
-lactone hydrolases.
The application of Baeyer-Villiger monooxygenases (BVMOs) seems an attractive option for the production of lactones (12, 31). BVMOs are enzymes catalyzing the insertion of one atom of oxygen next to an alicyclic keto group, thus forming lactones. However, BVMOs are relatively unstable enzymes that generally use the very expensive NADPH as the cofactor (31). Therefore, the application of whole cells of BMVO activity containing microorganisms is a prerequisite to ascertain in situ cofactor regeneration and to increase the stability of the enzyme. However, most microorganisms containing BVMO activity also have a high lactone hydrolase activity, resulting in a simultaneous degradation of the product of interest. Therefore, a lactone hydrolase activity-negative mutant of the biocatalyst should be constructed, for instance by gene disruption, to achieve accumulation of the lactone.
Recently, we purified and characterized a BVMO from Rhodococcus
erythropolis DCL14 involved in the degradation of
monocyclic monoterpenes (27). This BVMO has a broad
substrate specificity, catalyzing the lactonization of a large number
of monocyclic monoterpene ketones and substituted cyclohexanones.
However, monoterpene-grown cells of this strain also contain a very
high monoterpene
-lactone hydrolase (MLH) activity (25,
28). In this paper, we report on the purification,
characterization, gene cloning, and sequence determination of this
novel enzyme.
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MATERIALS AND METHODS |
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Strains and growth conditions.
R. erythropolis
DCL14 was previously isolated on (4R)-dihydrocarveol
(25) and is maintained at the Division of Industrial Microbiology (CIMW 0387B, Wageningen, The Netherlands). R. erythropolis DCL14 was subcultured once a month and grown at
30°C on a yeast extract-glucose agar plate for 2 days, after which
the plates were stored at room temperature. R. erythropolis
DCL14 was grown in 5-liter Erlenmeyer flasks containing 1 liter of
mineral salts medium (9) with a 0.01% (vol/vol) carbon
source and fitted with rubber stoppers. The flasks were incubated at
30°C on a horizontal shaker oscillating at 1 Hz with an amplitude of
10 cm. After growth was observed, the concentration of the toxic
substrates was increased with steps of 0.01% (vol/vol) until a total
of 0.1% (vol/vol) carbon source had been added. With ethanol,
succinate, and limonene-1,2-diol, cultures were grown in a 5-liter
Erlenmeyer flask containing 1 liter of mineral salts medium
supplemented with 3 g of the pertinent carbon source per liter.
Cells for enzyme purification were cultivated in a fed-batch fermentor
on (4R)-limonene as described previously (24).
Cells were collected by centrifugation (4°C, 10 min at 16,000 × g) and washed with 50 mM potassium phosphate buffer, pH 7.0. The pellet was resuspended in 7 ml of this buffer and stored at
20°C until used.
Purification of MLH. Cell extracts were prepared by sonication as described previously (24). Protein was determined by the method of Bradford (4) with bovine serum albumin as the standard. All purification steps were performed at 4°C and pH 7.0. If necessary, the pooled fractions were concentrated by ultrafiltration with an Amicon ultrafiltration unit using a membrane with a molecular weight cutoff of 10,000 under nitrogen at a pressure of 4 × 105 Pa.
Step 1: gel filtration. The cell extract (15 ml) was applied to a Sephacryl S300 (Pharmacia) column (2.5 by 98 cm) equilibrated with 10 mM potassium phosphate buffer (flow rate, 0.75 ml/min; collected fraction volume was 7.5 ml). Fractions containing MLH activity were pooled.
Step 2: hydroxyapatite. The pooled fractions from the gel filtration step were applied to a hydroxyapatite (Bio-Rad) column (5 by 6 cm) equilibrated with 10 mM potassium phosphate buffer and eluted with the same buffer (flow rate, 0.3 ml/min; collected fraction volume was 3 ml). The fractions containing MLH activity were pooled.
Step 3: anion-exchange chromatography. The pooled fractions from the hydroxyapatite step were applied to a DEAE-Sepharose CL-6B (Pharmacia) column (2.5 by 31 cm) equilibrated with 25 mM potassium phosphate buffer. The column was washed with 100 ml of the same buffer (flow rate, 0.75 ml/min; collected fraction volume was 7.5 ml), and subsequently the enzyme was eluted with a 0 to 1 M linear gradient of NaCl in the same buffer (total volume, 1 liter). MLH activity eluted at an NaCl concentration of 300 mM. Fractions exhibiting MLH activity were pooled and concentrated.
Step 4: Mono Q. One-milliliter samples of the concentrated MLH solution after step 3 (approximately 0.15 mg of protein) were applied to a Mono Q column (1.2 by 15 cm) operated with a fast protein liquid chromatography system (Pharmacia) at room temperature. The column was equilibrated with 50 mM Tris-HCl buffer (pH 8.0). The enzyme was eluted using a 0 to 1 M NaCl gradient in the same buffer (flow rate, 1.0 ml/min; collected fraction volume was 1 ml). MLH eluted at an NaCl concentration of 400 mM. Fractions exhibiting MLH activity were pooled and concentrated.
Determination of molecular weight.
The molecular weight of
the denatured protein was determined by sodium dodecyl
sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). An SDS-15%
polyacrylamide gel was prepared by the method of Laemmli
(11). Proteins were stained with Coomassie brilliant blue
G. The Pharmacia low-molecular-weight calibration kit, containing
phosphorylase b (94,000), bovine serum albumin (67,000),
ovalbumin (43,000), carbonic anhydrase (30,000), soybean trypsin
inhibitor (20,100), and
-lactalbumin (14,400), was used for the
estimation of the molecular weight.
Assay of MLH activity.
MLH activity was determined by
monitoring
-caprolactone degradation by gas chromatography
(GC). The reaction mixtures consisted of cell extract (10 to 100 µl) and 2 ml of a freshly prepared 5 mM
-caprolactone solution in
50 mM Tris-HCl (pH 9.0) in 15-ml vials fitted with Teflon Mininert
valves (Supelco Inc., Zwijndrecht, The Netherlands). The vials
were placed in a shaking water bath (30°C), and after 5, 10, and 15 min, a vial was removed from the water bath and the reaction was
terminated by the addition of 1 ml of ethyl acetate. The vials were
vigorously shaken to accomplish quantitative extraction of the lactone.
The ethyl acetate layer was pipetted in a microcentrifuge tube and
centrifuged (3 min, 15,000 × g) to achieve separation
of the two layers. Subsequently, 1 µl of the ethyl acetate layer was
analyzed by GC. For the determination of the pH optimum of enzyme
catalysis, the Tris-HCl (pH 9.0) buffer in the standard assay was
replaced with a 50 mM concentration of the other buffers. The effect of
inhibitors and ions was studied by adding 0.1 to 10 mM effector to MLH.
This mixture was preincubated at 30°C for 15 min, after which the MLH
activity was determined as described above. The substrate preference of
MLH was tested by incubating different amounts of MLH with 5 mM lactone
in Tris-HCl buffer (pH 9.0) at 30°C. The samples were extracted with
ethyl acetate and analyzed by GC.
Analytical methods.
All lactones were analyzed by chiral GC
on a fused silica cyclodextrin capillary column (
-DEX 120; 30-m
length, 0.25-mm internal diameter, 0.25-m film coating; Supelco). GC
was performed on a Chrompack CP9000 gas chromatograph equipped with a
flame ionization detector using N2 as the carrier
gas. The detector and injector temperatures were 250 and 200°C,
respectively, and the split ratio was 1:50.
-Caprolactone (retention
time [rt] = 18.6 min) was analyzed
isocratically at an oven temperature of 120°C.
4-Methyl-2-oxo-oxepanone (rt = 16.12 and 16.37 min), 5-methyl-2-oxo-oxepanone (rt = 16.72 and
17.03 min), 6-methyl-2-oxo-oxepanone (rt = 15.12 and 15.35 min), and 7-methyl-2-oxo-oxepanone (rt = 12.27 and 12.88 min) were analyzed at 130°C.
4-Isopropenyl-7-methyl-2-oxo-oxepanone (rt = 16.41 and 16.63 min), 6-isopropenyl-3-methyl-2-oxo-oxepanone (rt = 17.6 min),
(4R,7S)-7-isopropyl-4-methyl-2-oxo-oxepanone (rt = 12.71 min), and
(4S,7R)-7-isopropyl-4-methyl-2-oxo-oxepanone (rt = 12.56) were analyzed at 140°C.
-Valerolactone (rt = 12.2 min), ethyl acetate
(rt = 4.1 min), ethyl caproate
(rt = 5.2 min), and ethyl-6-hydroxyhexanoate
(rt = 12.2 min) were analyzed at oven
temperatures of 120, 60, 110, and 170°C, respectively.
Gene cloning. Two degenerated primers were designed for application in PCR. Primer N (GCIACNGAYACIGCNAGRGC) was deduced from the amino acid sequence ATDTARA, and primer C (AARTCRTCDATNGTNGCRTC) was the reversed complement of the sequence encoding amino acids DATIDDF. Total DNA of R. erythropolis DCL14 was isolated according to the method of Barbirato et al. (2) and used as the template in a touchdown PCR assay with Super Taq polymerase (HT Biotechnology Ltd., Cambridge, United Kingdom) according to the manufacturer's recommendations. The annealing temperature of the reaction was decreased 1°C every second cycle from 56 to 53°C and every fourth cycle from 53 to 50°C, at which temperature 15 cycles were carried out. An amplified fragment of the expected size was cloned into a pGEM-T Easy vector (Promega, Madison, Wis.), and its sequence was determined.
Total DNA of R. erythropolis DCL14 was digested with PstI and size separated on an agarose gel. Fragments of about 6.0 kb were isolated from the gel using the QiaexII gel extraction kit from Qiagen (Westburg, The Netherlands) and ligated in the corresponding site of the cloning vector pUC19. This minilibrary was plated in Escherichia coli DH5
. Resulting colonies
were transferred to nitrocellulose filters and hybridized to a PCR
digoxigenin-labeled probe (Roche Molecular Biochemicals, Mannheim,
Germany) amplified from primers N and C and the PCR clone as the
template. Positive colonies were rescreened, and a resulting positive
one was selected for construction of a restriction map and sequence analysis.
Standard methods were used for DNA manipulation and colony filter
hybridization (17). Sequencing was performed with a
Taq DYE terminator cycle sequencing kit and a dGTP BigDye
Terminator ready reaction kit (Perkin-Elmer, Norwalk, Conn.). Protein
sequences were screened against database sequence libraries using FASTA and BLAST.
Sources of chemicals.
In this paper, the sequence rule of
Cahn-Ingold-Prelog is used to differentiate between the
stereochemistries of the monoterpene stereoisomers. The carbon atom
numbering is based on the standard carbon atom numbering of limonene.
For the structures of the lactones used, see Fig.
2.
-Caprolactone was purchased from
Sigma-Aldrich, St. Louis, Mo., and (4R)-limonene was from
Acros Organics, Den Bosch, The Netherlands. 6-Hydroxyhexanoate was
prepared from
-caprolactone by chemical hydrolysis according to a
modified procedure as described previously (5). A 10 mM
solution of
-caprolactone in 50 mM Tris-HCl (pH 9.0) was incubated
at 60°C for 16 h. The solution was cooled, and the pH was
adjusted to 7.0 by addition of HCl. This solution contained no residual
lactone when assayed, and the mass spectrum (MS) of the product
was identical to that reported previously (32).
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Nucleotide sequence accession number. The nucleotide sequence containing the mlhA and mlhB genes has been deposited in the EMBL database under accession no. AJ292535.
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RESULTS |
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Induction of MLH activity in R. erythropolis.
R. erythropolis DCL14 is able to grow on a variety of
monocyclic monoterpenes. During growth on limonene, a
lactone-hydrolyzing activity which was not involved in limonene
degradation was measured (25). To study this MLH in more
detail, its activity was measured in cell extracts from R. erythropolis grown on different carbon sources (Table
1). Results show that growth on limonene,
oxygenated limonene derivatives, or cyclohexanol resulted in an 80- to
800-fold increase in MLH activity over that of cells grown on succinate or ethanol. Remarkably, the (4R)-stereoisomers of both
limonene and carveol were better inducers than the respective
(4S)-stereoisomers. Although
-caprolactone is a substrate
for MLH, it is not a very effective inducer of enzymatic activity. This
might be due to its polar structure, which prevents the compound from
passing the cell membrane.
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Purification of MLH.
MLH was isolated from
(4R)-limonene-grown cells. The purification scheme for this
enzyme is presented in Table 2. MLH was purified 26-fold with an overall yield of 26%. The absorption spectrum
of this colorless protein did not give any indications for the presence
of a prosthetic group. MLH could be stored at
20°C for 6 months,
without loss of activity.
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Biochemical characteristics of MLH. (i) Temperature and pH
optimum.
Under the conditions of the standard enzyme assay, MLH
has a relatively low temperature optimum of 30°C. Above 40°C, the
enzyme is readily inactivated (Fig. 4).
MLH has a quite broad pH optimum, peaking around pH 9.5 (Fig.
5).
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(ii) Inhibitors and metal ions.
A variety of enzyme inhibitors
was tested for their ability to inhibit MLH activity (Table
3). The thiol reagent iodoacetate did not
inhibit the enzymatic activity, nor did dithiothreitol or
MgCl2. p-Chloromercuribenzoate, the
carbonyl reagent phenylhydrazine, and the chelating agents
,
'-dipyridyl and EDTA inhibited the activity slightly, whereas
the imidazole-modifying compound 2-bromo-4'-nitroacetophenone strongly
inhibited MLH activity. Also, SDS, HgCl2, and
CoCl2 were strong inhibitors of the enzyme (Table
3).
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(iii) Substrate preference.
The
-caprolactone hydrolysis
product was identified as 6-hydroxyhexanoate based on its MS and
retention time after chiral GC. Unfortunately, very few
-lactones
are commercially available, and therefore we were not able to determine
the substrate preference of MLH very extensively. Among the lactones
tested (Fig. 2 and Table 4),
-caprolactone
(4R)-4-isopropenyl-7-methyl-2-oxo-oxepanone and
(6R)-6-isopropenyl-3-methyl-2-oxo-oxepanone were also
good substrates for the enzyme. These lactone derivatives of
dihydrocarvone (28) showed a higher relative activity than
did the lactone derivative of menthone,
7-isopropyl-4-methyl-2-oxo-oxepanone. Possibly, the position of
the isoprop(en)yl group with respect to the ester influences the
interaction between enzyme and substrate. Also, ethyl
caproate was a good substrate for the enzyme, indicating that MLH
is an esterase with a preference for lactones (internal cyclic esters).
Using 6-hydroxyhexanoate as the substrate, we have not been able to
detect the reverse reaction (i.e., formation of the lactone) at pH
values between 6.0. and 9.0. The enantiomers of 4-, 5-, 6-, and
7-methyl-2-oxo-oxepanone were converted at equal rates, suggesting that
MLH is not stereoselective.
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Cloning and characterization of the MLH-encoding gene.
Two
primers, deduced from the N-terminal amino acid sequence of the
purified MLH, generated a fragment of the expected size in a PCR assay
(about 75 bp). The sequence of this cloned PCR fragment corresponded to
the amino acids ATDTARAKELLASLVSMPDATIDDF, which
exactly matched part of the N-terminal amino acid sequence of the
purified enzyme. Southern blot analysis of total DNA of R. erythropolis DCL14 digested with PstI showed a
hybridizing fragment of about 6.0 kb when probed with the 75-bp PCR
fragment. PstI-digested total DNA of this size was isolated
from the gel and used to construct a minilibrary of R. erythropolis DCL14, which was subsequently screened for
positive clones using the 75-bp PCR fragment as the probe. Southern
blot analysis of a positive clone, pMLH22, proved the presence of the
sequence encoding the N terminus. Part of this 6.0-kb PstI
fragment was sequenced by subcloning various restriction fragments and
by primer walking. Two open reading frames (Fig.
6), designated
mlhA and mlhB (mlh = monoterpene
lactone hydrolysis), were identified, of which mlhB encoded
the N-terminal amino acid sequence of the purified MLH (Fig. 6). Amino
acid residue 35, however, although suggested to be an aspartic acid in
the N-terminal amino acid sequence analysis, proved to be a cysteine.
The mlhB sequence contained an 894-bp open reading frame
that began with an ATG start codon and ended with a TGA stop codon. It
encoded a 297-residue polypeptide that had a calculated molecular mass
of 31,134 Da, which is in agreement with the size of 35 kDa for the
purified enzyme as determined by SDS-PAGE. A comparison of the
mlhB amino acid sequence with sequences in the EMBL data
library revealed up to 43% similarity to hydrolases, esterases, and
lipases. The highest degree of sequence similarity was found with an
acetyl hydrolase of Streptomyces hygroscopicus (accession
no. q01109; 43% similarity to mlhB) and an esterase of
Acinetobacter calcoaceticus (accession no. p18773; 42%
similarity to mlhB). Both enzymes belong to the GDXG family of lipolytic enzymes (PROSITE: PDOC00903
[http://www.expasy.ch/prosite/]). Characteristic of
the GDXG family are two consensus sequences, containing a histidine and
a serine residue, respectively, as putative active-site residues. Both
motifs are also present in mlhB (boxed in Fig. 6). In the
first motif, 14 of the 17 amino acids were conserved; in the second
motif, 11 of the 13 amino acids were conserved. The putative
active-site residues are in boldface in Fig. 6.
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Structural organization of the mlhA and mlhB genes. In front of the mlhB sequence, another open reading frame was found and designated mlhA. It encoded a 246-residue peptide (Fig. 6) with a calculated molecular mass of 25,026 Da. The primary structure showed up to 55% sequence similarity to a 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase of Sphingomonas paucimobilis (accession no. P50197) and up to 54% sequence similarity to glucose-1-dehydrogenases (accession no. P10528 and P39483). These enzymes belong to the short-chain dehydrogenase reductase (SDR) family (PROSITE: PDOC00060 [http://www.expasy.ch/prosite/]). The SDR family signature was present in mlhA (boxed in Fig. 6) and contained a serine, tyrosine, and lysine (in boldface in Fig. 6) participating in the catalytic mechanism. Moreover, conserved features near the N terminus include (i) the GXXXGXG sequence; (ii) an aspartic residue, 18 residues downstream of GXXXGXG, and (iii) an NAG sequence, all involved in binding of NAD(P) (16, 30). These motifs are also boxed in Fig. 6. Based on the position of the GXXXGXG motif, which is commonly 11 to 15 residues downstream of the start codon (26) and a putative Shine-Dalgarno box (underlined in Fig. 6), a GTG for formylmethionine was assigned as the start codon. A TGA stop codon was identified 735 nucleotides downstream of the start codon. Both reading frames were preceded by a potential ribosomal binding site (underlined in Fig. 6). The mlhB sequence was followed by a region (positions 2145 to 2383, Fig. 6) the sequence of which was difficult to determine. Considering that this region may function as a terminator region, the presence of secondary structures may impede the sequence analysis. Using a sequence kit especially designed for sequencing secondary structures, sequence analysis was more successful; however, 100% accuracy could not be established.
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DISCUSSION |
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This report describes the purification, characterization, and gene cloning of MLH from R. erythropolis DCL14. MLH is induced when R. erythropolis DCL14 is grown on monoterpenes (Table 1), reflecting its function in the monocyclic monoterpene degradation pathways of this bacterium (28). Monoterpenes are the largest class of plant secondary metabolites and are widely distributed in nature (8). Remarkably little is known about the microbial degradation of these compounds (20, 21), and only a very few enzymes and genes involved in microbial monoterpene degradation have been characterized (23).
Previously,
-lactone hydrolases from A. calcoaceticus
NCIMB 9871 and Nocardia globerula CL1 have been purified and
characterized (3). These enzymes were involved in the
cyclohexanol degradation pathways of these microorganisms. Both strains
were unable to grow on monoterpenes as the sole source of carbon and
energy (6), but MLH nevertheless shares several
characteristics with the two
-lactone hydrolases. All three enzymes
have subunit masses of approximately 30 kDa, do not contain a
prosthetic group, are preferentially active with
-lactones, and have
a broad pH spectrum. Moreover, they are unable to catalyze the reverse
reaction, i.e., the lactonization of 6-hydroxyhexanoate
(3). In contrast, MLH is a monomer while the
-lactone
hydrolases from A. calcoaceticus and N. globerula are dimers.
Gene cloning and sequencing classified MLH as a member of the GDXG family of lipolytic enzymes. This is a small family of enzymes comprising hydrolases of microbial and mammalian origin. Characteristic are two consensus patterns containing the catalytic histidine and serine residues (7). Both GDXG family signatures were conserved over 80% in MLH (boxed in Fig. 6). Notably, inhibition of MLH activity by 2-bromo-4'-nitroacetophenone suggests the presence of a catalytic histidine in the enzyme. So far, only seven enzymes, containing a perfect match with the two GDXG family signatures, have been identified as members of the GDXG family (PROSITE: PDOC00903 [http://www.expasy.ch/prosite/]). However, during sequence homology studies with mlhB, we identified several more hydrolases containing the (almost perfect) GDXG family signatures.
Only one other
-lactone hydrolase gene was present in the databases.
This caprolactone hydrolase-encoding gene from Arthrobacter oxidans (accession no. E02645) showed 43% similarity to
mlhB and about 85% similarity to the GDXG family
signatures. Unfortunately, this enzyme has been described only in the
patent literature. Recently, Khalameyzer et al. (10)
isolated an esterase-encoding gene (estF1) from
Pseudomonas fluorescens DSM 50106 by using a nonspecific esterase assay. Remarkably, this enzyme catalyzed the hydrolysis of
-,
-, and
-lactones more efficiently than the hydrolysis of linear esters. No similarity was observed between MLH
and EstF1. Instead, EstF1 belongs to the
/
-hydrolase fold superfamily (PROSITE: PDOC00110 [http://www.expasy.ch/prosite/]).
In front of the mlhB gene, another open reading frame (mlhA) was found with sequence similarity to members of the SDR superfamily, comprising alcohol dehydrogenases and reductases. In the (dihydro)carveol degradation pathway of R. erythropolis DCL14, in which MLH is involved, (dihydro) carveol dehydrogenase and carvone reductase, both potentially belonging to the SDR superfamily, catalyze the first degradative steps (28). Anion-exchange experiments have revealed that, in cell extracts of limonene-grown cells, up to four different carveol dehydrogenases are present (25). Previously, we reported the characterization and gene cloning of dichlorophenol indophenol (DCPIP)-dependent carveol dehydrogenase from R. erythropolis DCL14, another member of the SDR superfamily (26). However, from enzyme induction studies and the localization of the gene, we concluded that this enzyme is mainly involved in the limonene degradation pathway of the microorganism (28). Considering that many genes of metabolic pathways are clustered in prokaryotes, mlhA possibly encodes one of the other three (dihydro)carveol dehydrogenases or carvone reductase.
Approximately 2 kb downstream of the mlhB gene, a partial
open reading frame was identified (see the full sequence of the 6-kb
PstI fragment in the EMBL database) that shows up to 68% similarity with acyl coenzyme A (CoA) dehydrogenases. These
enzymes are involved in the
-oxidation pathway of fatty acid
degradation. 3-Isopropenyl-6-oxoheptanoyl-CoA, the branched-chain fatty
acid formed in the limonene and (dihydro)carveol degradation
pathways of R. erythropolis DCL14 after ring opening, is
degraded further via the
-oxidation pathway (25, 28).
Since the acyl-CoA dehydrogenase-encoding gene is positioned close to
the mlh genes, a role for this gene in monoterpene
degradation in R. erythropolis DCL14 is suggested.
MLH did not show any stereoselectivity with the tested substrates, indicating that the enzyme itself is not a suitable biocatalyst for the production of optically pure lactones. However, using the mlhB sequence and the recently reported protocol for gene disruption in R. erythropolis (22), an MLH-deficient mutant of R. erythropolis DCL14 can be constructed, allowing the production of economically important lactones by the resident BVMO activity (27).
In conclusion, MLH from R. erythropolis DCL14 is a novel
enzyme involved in the degradation of monoterpenes. It belongs to the
GDXG family of lipolytic enzymes and is the first
-lactone hydrolase
that is both biochemically and genetically characterized.
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ACKNOWLEDGMENTS |
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This work was supported by grant FAIR CT 98-3559 from the European Community.
We thank Martin de Wit for technical assistance and Tony van Kampen for performing the DNA sequence analysis. Rob Leer (TNO-Voeding, Zeist, The Netherlands) is acknowledged for help with the DNA sequence analysis.
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FOOTNOTES |
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* Corresponding author. Mailing address: Department of Applied Microbiology and Gene Technology, TNO-Voeding, P.O. Box 360, 3700 AJ Zeist, The Netherlands. Phone: 31 30 694 40 71. Fax: 31 30 694 44 66. E-mail: vanderWerf{at}voeding.tno.nl.
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