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Applied and Environmental Microbiology, April 2001, p. 1800-1804, Vol. 67, No. 4
0099-2240/01/$04.00+0 DOI: 10.1128/AEM.67.4.1800-1804.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Pathway of Propionate Oxidation by a Syntrophic
Culture of Smithella propionica and
Methanospirillum hungatei
F. A. M.
de
Bok,1,*
A. J. M.
Stams,1
C.
Dijkema,2 and
D.
R.
Boone3
Laboratory of
Microbiology1 and Wageningen NMR
Centre,2 Wageningen University, Wageningen, The
Netherlands, and Department of Biology, Portland State
University, Portland, Oregon3
Received 4 October 2000/Accepted 22 January 2001
 |
ABSTRACT |
The pathway of propionate conversion in a syntrophic coculture of
Smithella propionica and Methanospirillum
hungatei JF1 was investigated by 13C-NMR
spectroscopy. Cocultures produced acetate and butyrate from propionate.
[3-13C]propionate was converted to
[2-13C]acetate, with no [1-13C]acetate
formed. Butyrate from [3-13C]propionate was labeled at
the C2 and C4 positions in a ratio of about 1:1.5. Double-labeled
propionate (2,3-13C) yielded not only double-labeled
acetate but also single-labeled acetate at the C1 or C2 position. Most
butyrate formed from [2,3-13C]propionate was also double
labeled in either the C1 and C2 atoms or the C3 and C4 atoms in a ratio
of about 1:1.5. Smaller amounts of single-labeled butyrate and other
combinations were also produced. 1-13C-labeled propionate
yielded both [1-13C]acetate and
[2-13C]acetate. When 13C-labeled bicarbonate
was present, label was not incorporated into acetate, propionate, or
butyrate. In each of the incubations described above, 13C
was never recovered in bicarbonate or methane. These results indicate
that S. propionica does not degrade propionate via the methyl-malonyl-coenzyme A (CoA) pathway or any other of the known pathways, such as the acryloyl-CoA pathway or the reductive
carboxylation pathway. Our results strongly suggest that propionate is
dismutated to acetate and butyrate via a six-carbon intermediate.
 |
INTRODUCTION |
In methanogenic environments
propionate is oxidized by acetogenic bacteria to acetate and carbon
dioxide (16, 18). Methanogenic archaea make this reaction
energetically favorable by removing reducing equivalents either as
hydrogen or as formate (1, 3, 19). Syntrophic propionate
oxidation mainly occurs via the randomizing methyl-malonyl-coenzyme A (CoA) pathway, as was demonstrated for several Syntrophobacter species (6, 7, 11), as
well as for mixed methanogenic cultures (2, 5, 8, 13, 14, 15,
22). However, other pathways of propionate degradation are
possible as well, such as a nonrandomizing pathway via butyrate (9, 22, 23). In these studies, evidence was provided that part of the propionate is carboxylated to butyrate which is then degraded to acetate. Alternative possible pathways of propionate conversion were recently documented by Textor et al. (21).
Recently, a novel syntrophic propionate-oxidizing bacterium was
isolated which may possess a propionate-degradation pathway via
butyrate (10). Cocultures of Smithella
propionica and a hydrogen- and formate-utilizing methanogen
produce less methane and more acetate than cocultures with
Syntrophobacter strains. In addition, the cocultures with
S. propionica produce small amounts of butyrate. It was
suggested that this organism dismutates propionate to acetate and
butyrate followed by syntrophic
-oxidation of butyrate to acetate.
We report here the results of 13C-nuclear magnetic
resonance (NMR) studies to elucidate the pathway of propionate
oxidation in S. propionica.
 |
MATERIALS AND METHODS |
Organisms and cultivation.
Methanospirillum
hungatei JF1T was obtained from the Deutsche Sammlung
von Mikroorganismen und Zellkulturen in Braunschweig, Germany. The MS
medium (3) with 0.5 g of casein tryptic peptone and
0.5 g of yeast extract per liter, but with 1 mM
L-cysteine instead of 1 mM mercaptoethane sulfonate, was
used to grow syntrophic cultures of S. propionica and
M. hungatei. The methanogens were pregrown on H2
and CO2 in 120-ml serum vials with 50 ml of medium. After
growth the gas atmosphere was replaced by N2 and
CO2 (80:20), and S. propionica (in coculture
with Methanospirillum hungatei) was inoculated into these
M. hungatei cultures. The cocultures were incubated at
37°C with 10 mM propionate.
NMR spectroscopy.
Stable isotopes (minimum, 99%
13C) were obtained from Campro Scientific B.V. (Veenendaal,
The Netherlands). Serum vials were prepared with 10 mM concentrations
of either [1-13C]propionate,
[2-13C]propionate, [3-13C]propionate, or
[2,3-13C]propionate as substrates in 50 ml of medium. To
test the incorporation of
H13CO31
, the coculture was grown
on 10 mM unlabeled propionate in the presence of 50 mM
H13CO31
. The combination of 10 mM
unlabeled propionate and 4 mM [1-13C]acetate or
[2-13C]acetate was also tested. After 10, 20, and 30 days
3-ml samples were withdrawn for analysis. Cells were removed by
centrifugation at 10,000 × g, and D2O and
dioxane were added to 2 ml of supernatant to give a final volume of 2.5 ml in 10-mm (outer-diameter) NMR tubes containing 10% D2O
and 100 mM dioxane. The proton-decoupled 13C-NMR spectra of
the samples were recorded at 75.47 MHz on a Bruker AMX-300 NMR
spectrometer. For each spectrum 7,200 transients (2 h) were accumulated
and stored on disk using 32,000 datum points, a 45° pulse angle
(pulse duration, 9 µs), and a delay time of 1 s between the
pulses. The measuring temperature was maintained at 25°C, and the
chemical shift belonging to the dioxane carbon nuclei (67.4 ppm) was
used as an internal standard. The deuterium in the samples (10%
[vol/vol]) was used for the field lock. A balance of
13C-labeled compounds was calculated by relating the areas
of the observed resonances to the areas in the spectrum of a sample
containing propionate, butyrate, and acetate (100 mM concentrations of
each; 1.11% natural abundance) measured under identical conditions
with dioxane as an internal standard.
Other analytical techniques.
The remainder of the 3-ml
samples withdrawn for NMR measurements was analyzed for organic acids.
Also, 0.4-ml gas samples were withdrawn to determine the amount of
CH4 produced. Organic acids acids were measured with a
Spectrasystem HPLC system equipped with an autosampler and
Refractomonitor. The acids were separated on a Polyspher OAHY column
(30 cm by 6.5 mm; Merck, Darmstadt, Germany) in 0.01 N
H2SO4 at a flow rate of 0.6 ml/min and a column temperature of 60°C. The acids eluting from the column were
quantified by differential refractometry (17).
Methane levels were measured chromatographically with a Packard-Becker
417 gas chromatograph equipped with a thermal conductivity detector and
molecular sieve 13X (60/80 mesh). The column temperature was 50°C,
and the carrier gas was argon at a flow rate of 30 ml/min.
 |
RESULTS |
Growth experiments.
Growth of the syntrophic coculture of
S. propionica and M. hungatei is shown in Fig.
1. After 30 days of incubation, the
culture produced 0.1 mol of methane, 1 mol of acetate, and 0.1 mol of butyrate per mol of propionate degraded (Fig. 1). In control bottles without propionate and in bottles to which 5 mM bromoethane sulfonate was added, no measurable changes in the organic acid concentration were
observed and no methane was produced.

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FIG. 1.
Growth of S. propionica in coculture with
M. hungatei JF1 in 50-ml batches. , Propionate; ,
acetate; , butyrate; ×, methane produced.
|
|
NMR measurements.
When S. propionica was grown with
[3-13C]propionate, both [2-13C]acetate and
unlabeled acetate were produced, while [1-13C]acetate was
not formed (Tables 1 and 2). Label initially appeared mainly at the C4
position of butyrate, but after 30 days of incubation, label was
recovered at the C2 and C4 positions of butyrate, in a ratio of about
1:1.5 (Table 1).
[2-13C]propionate yielded [1-13C]acetate as
well as unlabeled acetate, though small amounts of [2-13C]acetate and [1,2-13C]acetate were
also detected. Throughout this experiment, nearly equal amounts of
label were detected at the C1 and C3 positions of butyrate (Tables 1
and 2). The batches fed with
[1-13C]propionate yielded nearly equal amounts of
[1-13C]acetate, [2-13C]acetate, and
unlabeled acetate (Fig 2A; Tables 1 and
2). In this experiment the label initially appeared at the C2 position of butyrate, while after 30 days of incubation label was distributed more evenly over all carbon atoms (Fig. 2A). Double-labeled propionate at the C2 and C3 positions yielded [1-13C]acetate,
[2-13C]acetate, and [1,2-13C]acetate in a
ratio near 1:1:1. Butyrate was initially mainly double labeled at the
C3 and C4 positions, but after 30 days of incubation substantial
amounts of single labeled butyrate and other combinations were also
detected (Fig. 2B, Tables 1 and 2).
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TABLE 2.
Distribution of 13C in acetate recovered from
propionate conversion by S. propionica and M. hungatei after 30 days of incubation
|
|

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FIG. 2.
Time courses of propionate conversion by S. propionica as measured by 1H-decoupled
13C-NMR. P, propionate; A, acetate; B, butyrate. The
numbers refer to the position of the 13C atoms. (A)
Incubation with [1-13C]propionate. (B) Incubation with
[2,3-13C]propionate. The resonances within the area of
the carboxyl-groups (150 to 190 ppm) in this spectrum are enlarged by a
factor 4.
|
|
Label was also recovered in butyrate and propionate when the culture
was grown on propionate in the presence of labeled acetate.
Label from
[1-
13C]acetate was detected at the C1 and C3 positions of
butyrate
and at the C2 of propionate (data not shown), whereas
[2-
13C]acetate yielded label at the C2 and C4 positions
of butyrate
and at the methyl group of propionate (Table
1).
Although H
13CO
31
was visible in
all of the NMR spectra due to natural abundance (approximately 0.5 mM;
Fig.
2), there were no
substantial increases of the bicarbonate area
observed. Therefore,
we did not make further attempts to quantify
H
13CO
31
or
13CH
4. In addition, when the coculture was
grown in the presence
of 50 mM
H
13CO
31
we could not detect
incorporation of label, since all the observed
areas were due to the
natural abundance of the compounds present,
as was calculated from the
high-pressure liquid chromatography
data.
 |
DISCUSSION |
The stoichiometry of propionate conversion by the coculture of
S. propionica and M. hungatei was similar, as
reported previously (10). Our results obtained with
13C-NMR support the theory that propionate is dismutated to
acetate and butyrate, followed by syntrophic
-oxidation of butyrate
to acetate. In addition, the results enabled us to propose a pathway of
propionate conversion by S. propionica. A randomizing
pathway, which was found for several Syntrophobacter
species, could be excluded since there was no exchange in label due to
symmetry in any of the intermediates (6, 7, 11).
Initially, we expected to find an acryloyl-CoA-like pathway in
combination with reductive carboxylation, as reported in previous
studies (9, 22, 23). However,
[1-13C]propionate did not yield
H13CO31
, and experiments with
[2,3-13C]propionate showed that at least half of the
methyl-methylene bonds were broken. Furthermore,
H13CO31
was not incorporated into
propionate, indicating that the C1 of butyrate is introduced either via
transcarboxylation or via Claisen condensation. Condensations
involving propionyl-CoA were reported by Reeves and Ajl
(12) and by Tabuchi et al. (20). However,
these pathways both lead to the formation of acetyl-CoA via
decarboxylation (of pyruvate) and do not explain the breakage of the
methyl-methylene bonds either. Incubations with labeled acetate showed
that an acetyl-CoA condensation pathway is present in S. propionica, most likely one similar to the pathway found for
Syntrophomonas wolfei (24). However, the
majority of the butyrate is produced in a different fashion, since
single-labeled propionate initially yielded mainly single-labeled
butyrate and [2,3-13C]propionate initially yielded mainly
[3,4-13C]butyrate.
A pathway which could explain the observed labelling pattern is
depicted in Fig. 3. The high levels of
[1-13C]butyrate from [2-13C]propionate and
[2,3-13C]propionate suggest that the C2 of propionate is
coupled to the carboxyl group of a second propionate molecule. A
rearrangement of the six-carbon intermediate to give an unbranched
molecule followed by cleavage of acetate would explain the ratios of
labeled acetate, as well as the ratios of labeled to unlabeled acetate (Fig. 3). The residual four-carbon molecule (butyrate) is then further
oxidized syntrophically to acetate, a result which agrees with the
amounts of methane produced. The presence of such pathway is strongly
favored by the fact that we could not demonstrate incorporation or
excretion of H13CO31
. The
incubations in the presence of labeled acetate revealed that the
pathway is reversible. This explains the observed shift of label in
time toward a more equal distribution in butyrate. It also explains why
small amounts of label are recovered in [2-13C]acetate
from [2-13C]propionate and double-labeled acetate from
either [1-13C]- or [2-13C]propionate, while
[3-13C]propionate yielded exclusively
[2-13C]acetate. In addition, it explains the distribution
of label in butyrate, as well as the formation of
[2,3-13C]butyrate from [2-13C]propionate.

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FIG. 3.
Proposed pathway for propionate conversion by S. propionica. Step 1, condensation of the C2 of propionate to the
carboxyl of another propionate molecule or derivative; step 2, rearrangement of the methyl group and transfer of the oxygen to the C3
of the intermediate; step 3, cleavage of 3-ketohexanoate yielding
butyrate and acetate; step 4, syntrophic -oxidation of butyrate to
acetate.
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|
Most likely all steps in the proposed pathway require CoA derivatives,
as occurs during butyrate oxidation. The initial activation of
propionate may be accomplished by CoA transfer from acetyl-CoA or
another CoA-containing intermediate. Like other rearrangement reactions, the isomerization of the two-methyl group to an unbranched molecule is likely a coenzyme B12-dependent reaction. The
mechanism of this rearrangement may be identical to the reaction
catalyzed by methyl-malonyl-CoA mutase (4). Transfer of
the keto group would require a reduction and a dehydration, yielding a
double bond between C3 and C4, followed by the addition of
H2O and oxidation to 3-ketohexanoate. Possibly the last two
steps are catalyzed by crotonase and butyryl-CoA dehydrogenase, enzymes
also required for the cleavage of butyrate.
S. propionica is the first syntrophic propionate-oxidizer
that may account for the nonrandomizing pathway observed in
methanogenic habitats. The results seem to fit in previous studies with
methanogenic biomass and enrichment cultures in which the presence of
an alternative route for propionate oxidation was clearly demonstrated
by the use of 13C-NMR (9, 22, 23). The
isolation of S. propionica enabled us to study this pathway
into detail without interference of the randomizing methyl-malonyl-CoA
pathway which also occurs in complex microbial communities. It might be
interesting to study the occurrence of S. propionica or
microorganisms with a similar pathway in anaerobic digesters and other
methanogenic environments.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Laboratory of
Microbiology, Wageningen University, Hesselink van Suchtelenweg 4, 6703 CT Wageningen, The Netherlands. Phone: 31-317-483752. Fax:
31-317-483829. E-mail:
Frank.deBok{at}algemeen.micr.wau.nl.
 |
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Applied and Environmental Microbiology, April 2001, p. 1800-1804, Vol. 67, No. 4
0099-2240/01/$04.00+0 DOI: 10.1128/AEM.67.4.1800-1804.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
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