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Applied and Environmental Microbiology, August 2001, p. 3746-3749, Vol. 67, No. 8
0099-2240/01/$04.00+0 DOI: 10.1128/AEM.67.8.3746-3749.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Purification and Characterization of a
Dimethoate-Degrading Enzyme of Aspergillus niger ZHY256,
Isolated from Sewage
Yu-Huan
Liu,1,*
Ying-Cheng
Chung,1 and
Ya
Xiong2
State Key Laboratory for Biocontrol, School
of Life Science,1 and School of
Chemistry and Chemical Engineering,2 Zhong Shan
University, Guang Zhou 510275, People's Republic of China
Received 8 January 2001/Accepted 9 May 2001
 |
ABSTRACT |
A dimethoate-degrading enzyme from Aspergillus niger
ZHY256 was purified to homogeneity with a specific activity of 227.6 U/mg of protein. The molecular mass of the purified enzyme was estimated to be 66 kDa by gel filtration and 67 kDa by sodium dodecyl
sulfate-polyacrylamide gel electrophoresis. The isoelectric point was
found to be 5.4, and the enzyme activity was optimal at 50°C and pH
7.0. The activity was inhibited by most of the metal ions and reagents,
while it was induced by Cu2+. The Michaelis constant
(Km) and
Vmax for dimethoate were 1.25 mM and 292 µmol min
1 mg of protein
1, respectively.
 |
TEXT |
Organophosphorus pesticides
have been used in large quantities throughout the world since the first
introduction of a synthetic insecticide, parathion, for use in crop
protection in 1944 (16). Problems of contamination
resulting from surplus pesticides and wastewater from pesticide
factories have become obvious. The transformation of pesticides in the
environment results from physicochemical reactions as well as from the
activity of cellular or extracellular components of the biota
(microorganisms, plants, and animals), but the principal biological
pathway is microbial degradation (7): microorganisms can
metabolize various pesticides both in soil and in water. The earlier
metabolic studies on pesticides helped to develop a new approach to the
detoxification of pesticides using cell-free enzymes from adapted
microorganisms to resolve problems related to whole-cell metabolism of
pesticides. Munnecke purified an enzyme from a mixed bacterial culture
grown on parathion and found that it hydrolyzed parathion and related
organophosphorus insecticides (13). Mulbry and Karns
purified three unique parathion hydrolases from gram-negative bacterial
isolates. These enzymes with different characteristics were exploited
in different types of waste disposal (12). Although there
have been a number of reports on the metabolism of parathion by enzyme
preparations from bacteria or by mixed-culture bacteria
(12-14), there have been no successful cell-free studies
with fungi capable of degrading organophosphorus insecticides. To our
knowledge, this is the first dimethoate-degrading enzyme purified to
homogeneity from a fungus. Characterization and comparison of the
degrading enzymes from different microorganisms may help us to
understand fully how these enzymatic activities may evolve and how
organophosphorus insecticides are degraded in the ecosystem.
Microorganism and enzyme production.
All experiments were
performed in triplicate, and results, where appropriate, are presented
as means. Aspergillus niger ZHY256 was isolated from sewage
and the soil of cotton fields where pesticides were heavily used and
maintained on potato dextrose agar. For enzyme production, the fungus
was grown on basal salt medium (0.2% NaNO3,
0.05% KCl, 0.05% MgSO4 · 7H2O, 0.02% BaCl2, 0.01%
MnSO4, 0.005% CaCl2, pH
6.8, supplemented with dimethoate at a concentration of 0.25%
[wt/vol]). Dimethoate-degrading enzyme activity was detected at the
late log phase and reached the maximum level 5 days after the start of
cultivation. It was found that Ba2+ greatly
stimulated the enzyme production with an optimum concentration of 1 mM
in the medium. The addition of Ba2+ to the cell
extract cultured without Ba2+ did not accomplish
any acceleration of the enzyme activity, showing that
Ba2+ is needed to produce the enzyme or to
stabilize the enzyme produced. The effects of various carbon sources on
dimethoate-degrading enzyme production by A. niger ZHY256
were investigated (Table 1). The
microorganism grew on every substrate tested, although the mycelial
mass yield was about four times lower on dimethoate- or
malathion-containing media than on dextrose- or sucrose-containing media. Differences in growth yield were, however, not related to
differences in total or relative enzyme production. The greatest amount
of dimethoate-degrading enzyme activity was from cell extract grown in
dimethoate-containing basal salt medium.
Enzyme purification.
All experiments described below were
carried out between 0 and 4°C unless otherwise specified. A. niger ZHY256 was incubated at 30°C for 5 days in 500-ml
Erlenmeyer flasks containing 150 ml of medium on a rotary shaker at 150 rpm and harvested by centrifugation at 12,000 × g for
20 min. The collected mycelia were washed twice with cold 50 mM
Tris-HCl buffer (pH 7.0) and disrupted (8 ml of buffer/g of wet
mycelia) in a vibration homogenizer (Vibrogen vi4; Edmund, Tuebingen,
Germany) with glass beads (0.1-mm diameter). After standing at 4°C
overnight, the suspension was centrifuged (12,000 × g
for 20 min at 4°C) to remove the unbroken cells and cellular debris.
The supernatant was filtered through a 0.22-µm-pore-size membrane
(Millipore), the filtrate being the crude extract of the enzyme. The
protein of the crude extract was precipitated overnight with 80%
(NH4)2SO4.
The resulting precipitate was collected by centrifugation at
12,000 × g for 20 min, dissolved in the smallest possible volume of 50 mM Tris-HCl buffer (pH 7.0), dialyzed 1,000-fold against the same buffer, and concentrated by ultrafiltration. The
concentrated enzyme solution was loaded onto a Sephadex G-100 column
(1.8 by 100 cm) preequilibrated with 50 mM Tris-HCl buffer (pH 7.0).
The column was washed at a flow rate of 24 ml/h with 400 ml of the same
buffer, and 5-ml fractions were collected. The molecular weight of the
native enzyme was determined by the method of Andrew by using blue
dextran and molecular weight markers from Sigma as standards
(2). Proteins were eluted in fractions 18 to 80, whereas
the enzyme was confined to fractions 26 to 38. The fractions with high
specific activity were then pooled and concentrated for further
purification. Fractions with dimethoate-degrading enzyme activity were
loaded on a DEAE-Sepharose CL-6B ion-exchange column (1.2 by 30 cm)
preequilibrated with 50 mM Tris-HCl buffer (pH 7.0). The column was
washed at a flow rate of 20 ml/h with 500 ml of the same buffer, and
proteins were eluted with a linear gradient of NaCl from 0 to 1.0 M. Five-milliliter fractions were collected. This enzyme solution was the
purified dimethoate-degrading enzyme preparation used for subsequent
characteristic studies. The data for the purification are summarized in
Table 2. The enzyme was purified
36.1-fold to a specific activity of 227.6 U/mg of protein from the
mycelia with a yield of 33.48%.
Enzyme assay.
Dimethoate-degrading enzyme activity was assayed
with 50 mM dimethoate as a substrate. The reaction was carried out at
50°C in a final volume of 1 ml of 50 mM Tris-HCl buffer (pH 7.0) and was stopped by adding 1 ml of 2 M trichloroacetic acid, and the amounts
of all organophosphorus insecticides tested in the experiments were
determined by a gas chromatograph (model PE Sigma 2000) with a glass
column (1-m length, 2-mm inner diameter) packed with 5% OV-17 on
Chromosorb WDMCS, operated at 220°C, with the detector at
250°C and the injector at 230°C (3, 5, 18). One unit of activity was defined as the amount of enzyme that catalyzes the
degradation of 1 µmol of dimethoate per min under these conditions. The protein concentration was determined according to the method of
Lowry et al., with bovine serum albumin as the standard
(11).
Enzyme characterization.
The purified enzyme gave a single
band in sodium dodecyl sulfate-polyacrylamide gel electrophoresis
(SDS-PAGE) by the method of Laemmli (8). This indicated
that the purified sample was electrophoretically homogeneous under the
dissociating conditions (Fig. 1). The
molecular mass of the purified enzyme was estimated to be approximately
66 kDa by gel filtration on a calibrated column of Sephadex G-100,
which was quite close to the value determined for parathion hydrolase
of strain SC (12). The value was confirmed by SDS-PAGE
(Fig. 1). Hence, it is assumed that the native dimethoate-degrading enzyme is a monomer.

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FIG. 1.
SDS-PAGE of the purified dimethoate-degrading enzyme
from A. niger ZHY256. Lane 1, marker proteins (from top
to bottom) phosphorylase b
(Mr, 94,000), bovine serum albumin
(Mr, 67,000), ovalbumin
(Mr, 43,000), carbonic anhydrase
(Mr, 30,000), and -lactalbumin
(Mr, 14,400), respectively; lane 2, purified
enzyme. The gel was stained for protein with Coomassie brilliant blue
R-250 and destained in methanol-acetic acid-water (7:6:47).
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The isoelectric point (pI) was estimated by PAGE with 6.25% Ampholine
(pH 3.5 to 10) in a gel rod (0.5 by 10 cm) using a kit
for isoelectric
focusing calibration (Pharmacia LKB) according
to the recommendations
of the supplier. The pI value was estimated
to be 5.4.
The N-terminal amino acid sequence of the protein was determined in
samples of purified dimethoate-degrading enzyme after
running them on
an SDS-polyacrylamide gel; the protein was transferred
to a
polyvinylidene fluoride membrane (Millipore Corp.) by electroblotting
and then stained (
9). The polyvinylidene fluoride membrane
slice containing the purified enzyme was excised, and the sequence
was
determined in a Beckman LF300 sequencer. The results revealed
the
following sequence:
MKTLELEEREV.
For determination of the pH optimum, the activity was determined by
incubating purified enzyme (0.3 µg/ml) with 50 mM dimethoate
and at
pH values between 5.5 and 10.0 at 50°C for 30 min. For
the pH
stability determination, samples were incubated in buffers
from pH 5.5 to 10.0 and at 40°C for 2 h, and the relative residual
activity
was assayed under standard conditions as described above.
The
temperature optimum was determined analogously with a constant
pH of
7.0 and different temperatures. For determination of the
thermostability, purified enzyme (0.3 µg/ml) was incubated in
reaction buffer for 4 h at temperatures ranging from 20 to 75°C,
and the remaining dimethoate-degrading enzyme activity was measured
as
before. As shown in Fig.
2, the optimal
temperature and pH
were 50°C and 7.0, respectively. The enzyme was
found to be stable
in the pH range between 6.0 and 9.5. The enzyme was
active over
a wide temperature range around 40°C, similarly to the
enzyme
produced by the three gram-negative bacterial strains described
above (
12).
Effects of reagents and metal ions on the enzyme activity were examined
by preincubating the enzyme with 2 mM chemicals in
50 mM Tris-HCl
buffer (pH 7.0) for 30 min at 40°C and then measuring
the residual
activities of the enzyme by using dimethoate as a
substrate. The
results are presented in Table
3. The
purified
enzyme was strongly inhibited by Hg
2+,
Ag
+, and Fe
3+; this may
indicate that thiol groups are involved in the active
catalytic site.
The enzyme was completely inhibited by sulfhydryl
reagents (such as
2-mercaptoethanol, dithiothreitol, and glutathione),
well-known thiol
group inhibitors, therefore suggesting again
that sulfhydryl groups may
be involved in the catalytic center
of the enzyme (
1,
4,
15,
19-21). The enzyme was not sensitive
to phenylmethanesulfonyl
fluoride, which suggests that serine
may not be involved in the active
site of the enzyme. The metal-chelating
agent EDTA and
1,10-phenanthroline did not inhibit the purified
enzyme activity,
indicating that divalent cations are not required
for enzyme
activation. However, Cu
2+ did evidently activate
the enzyme activity, which was the same
as that of parathion hydrolase
of strain SC described above (
12).
The optimum
concentration was 6 mM. A further increase of the
concentration of
copper ion above the optimum value, however,
resulted in a decrease in
enzyme activity. No inhibition was observed
with certain organic
solvents at a low (3% [vol/vol]) concentration
such as acetone,
methanol, and ethanol.
Organophosphorus pesticides such as parathion, dichlorovos, dimethoate,
formothion, and malathion were tested for substrate
specificity of the
enzyme, which was determined by measuring the
decrease of substrate
concentration. The results revealed that
dimethoate, formothion, and
malathion were hydrolyzed by the enzyme
while other pesticides were not
(Table
4). The first two compounds
possess a P---O---C bond, while formothion and malathion are
characterized
by a P---S---C bond identical to that of dimethoate.
Products of the
degradation assay were determined by previously
reported methods
(
6). According to colorimetric results
and thin-layer chromatography,
O,
O-dimethyl
phosphorothioate exists in the supernatant of the
degradation assay
mixture but not in that of the control assay
mixture. Therefore, we may
primarily conclude that the purified
enzyme can degrade the P---S
linkage of dimethoate, formothion,
and malathion, which is
different from parathion hydrolases, which
attack the P---O bond
in gram-negative bacterial strains (
12)
and
Flavobacterium sp. (
17). Products of
degradation of dimethoate
are
(CH
3)
2P(S)OH and
HSCH
2C(O)NHCH
3.
The kinetic properties of the purified enzyme were studied by measuring
the initial velocity of the reaction in 50 mM Tris-HCl
buffer (pH 7.0)
at 40°C over the substrate concentration range
of 0.1 to 5 mM. The
kinetic constants of the purified enzyme were
determined by the
Lineweaver-Burk equation (
10) by using the
Microcal Origin
software program. The regression of experimental
data showed a linear
response. The
Km value of dimethoate was
estimated to be 1.25 mM. The maximum initial velocity for the
conversion of the substrate was 292 µmol min
1
mg of protein
1.
In conclusion, there are some difficulties in comparing the inherent
properties of various organophosphorus pesticide-degrading
enzymes
because of the differences in experimental conditions,
the purity of
the enzyme preparations, and the origin of organophosphorus
pesticide-degrading enzymes. All these results suggest that
A. niger ZHY256 produces a novel organophosphorus pesticide-degrading
enzyme.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: School of Life
Science, Zhong Shan University, Guang Zhou 510275, People's Republic of China. Phone: 020-84110786. Fax: 020-84036215. E-mail:
Lsslyh{at}zsu.edu.cn.
 |
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Applied and Environmental Microbiology, August 2001, p. 3746-3749, Vol. 67, No. 8
0099-2240/01/$04.00+0 DOI: 10.1128/AEM.67.8.3746-3749.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.