Previous Article | Next Article ![]()
Applied and Environmental Microbiology, January 2002, p. 46-52, Vol. 68, No. 1
0099-2240/02/$04.00+0 DOI: 10.1128/AEM.68.1.46-52.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Génétique Microbienne, INRA, Domaine de Vilvert, 78352 Jouy-en-Josas Cedex, France,1 Food Functionality Research Institute, Meiji Milk Products Co., Ltd., 540 Naruda, Odawara 250-0862, Japan2
Received 11 December 2000/ Accepted 1 October 2001
|
|
|---|
|
|
|---|
Several reports have described introduction of DNA into L. delbrueckii strains by protoplast transformation (4), protoplast transfection (8), and electroporation 28, 36; T. Sasaki, Y. Ito, and Y. Sasaki, 4th Symp. Lactic Acid Bacteria, abstr. A8, 1993; T. Sasaki, 20 July 1993, Japanese Patent Office). However, the use of protoplast transformation and transfection methods has not been described since these reports, and there are major difficulties in using the briefly described electroporation procedure. Only one strain belonging to a public collection, ATCC 11842, can be transformed with the electroporation method, and it can be transformed only with very low reproducibility and efficiency.
The development of electroporation procedures for several Lactobacillus species, such as Lactobacillus helveticus (6, 23), Lactobacillus casei (11), Lactobacillus acidophilus (32), and Lactobacillus sakei (5), highlighted the conclusion that several parameters have to be tested in order to optimize electroporation efficiency for this group of organisms. Among these parameters are (i) the growth stage at which cells are harvested, which depends on the species or even the strain used (5, 6); (ii) the composition of the wash and electroporation buffers, which has been shown to play an important role in the transformation of several lactobacilli (2, 5, 32); (iii) the parameters of the electrical pulse (2); and (iv) the source of the DNA used to transform, since restriction-modification systems can severely inhibit transformation with foreign DNA (23).
Another difficulty in the development of a transformation procedure is the choice of the plasmid used. Indeed, the ability of a plasmid to replicate and to express its selectable marker in a given species is not predictable. The use of an endogenous plasmid carrying a native selectable marker often solves this problem. Unfortunately, it has been established that L. delbrueckii subsp. bulgaricus strains harbor very few plasmids. So far, three plasmids from L. delbrueckii subsp. bulgaricus and two plasmids from L. delbrueckii subsp. lactis have been isolated and at least partially sequenced. However, the replication mechanisms of these plasmids were not determined, and none of the plasmids carried an antibiotic resistance gene. The plasmids originating from L. delbrueckii subsp. bulgaricus are pBUL1 (Y. Ito, Y. Sasaki, and T. Sasaki, 4th Symp. Lactic Acid Bacteria, abstr. A9, 1993; Y. Ito, 3 March 1993, European Patent Office), pN42 (R. D. Pridmore, C. Blancpain, and B. Mollet, 4th Symp. Lactic Acid Bacteria, abstr. P10, 1993; B. Mollet, 15 March 1995, European Patent Office), and pLBB1 (GenBank accession number AF236060). Plasmid pWS58 (28) and, more recently, plasmid pLL1212 (GenBank accession number AF109691) were isolated from L. delbrueckii subsp. lactis. Only one plasmid, an erythromycin-resistant derivative of pBUL1 (designated pX3), was reintroduced into L. delbrueckii subsp. bulgaricus (Ito et al., 4th Symp. Lactic Acid Bacteria; Ito, European Patent Office). Other data have resulted from the use of heterologous plasmids; pIP501 (originating from Streptococcus agalactiae) was conjugated from Lactococcus lactis into L. delbrueckii subsp.bulgaricus IL-429 and IL-431 (30), pSY2 (originating from Lactococcus lactis) was electroporated into L. delbrueckki subsp. bulgaricus T-11 (36), and pGT633 (isolated from Lactobacillus reuteri [38]) and pCU1882 (a derivative of a Lactobacillus curvatus cryptic plasmid [29]) have been reported to transform L. delbrueckii. However, except for pSY2 (36), none of these plasmids was used for genetic experiments performed with L. delbrueckii. Because the plasmids mentioned above have different replication mechanisms, as well as different antibiotic resistance genes, no obvious criterion can be used to predict the ability of a plasmid to replicate in L. delbrueckii subsp. bulgaricus.
In this work, we adapted the previously described procedure for electrotransformation of L. delbrueckii subsp.bulgaricus (Sasaki et al., 4th Symp. Lactic Acid Bacteria, abstr. A8, 1993) to a strain, which resulted in about 104 transformants per µg of plasmid DNA in routine use. Using this protocol, we identified 9 replicative plasmids among 13 plasmids tested, and we showed that pMC1, a site-specific integrative plasmid (16), can integrate in the L. delbrueckii subsp. bulgaricus chromosome. In addition, two other L. delbrueckii strains were reproducibly transformed with this procedure.
|
|
|---|
(lac-pro) tsx-78 glnV44 galK2 galT22 thi-1 F' [lacIq
(lacZ)M15 pro +]}, and JJC128 [hsdR hsdM+araD139
(ara-leu)7696 galE15 galK16
(lac)X74 Strr] were used for plasmid propagation to check the effects of different restriction-modification mutations on transformation efficiency.
The plasmids used are listed in Table 1. Plasmids pX3, pJK650, pNZ12, pGB305
, and pG+host4 were isolated from Lactococcus lactis IL-1403 (12). Plasmid pLEM7 was isolated from L. reuteri LEM83 (17). Plasmids pE194 and pC194 were propagated in Bacillus subtilis SB202 (26), whereas plasmid pGT633 was isolated from B. subtilis BD170 (38). Plasmids pLEM415, pULP8, pCU1882, pAZ20, pJK300, and pMC1 were extracted from E. coli TG1 {hsdR supE thi
(lac-proAB) F' [traD36 proAB lacIq
(lacZ)M15]} (20).
|
View this table: [in a new window] |
TABLE 1. Efficiencies of L. delbrueckii subsp.bulgaricus VI104 transformation with various plasmids
|
The effect of glycine as a cell wall-weakening agent was tested by using the following concentrations: 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 1, 1.5, 2.0, 2.5, and 3.0%.
Transformation procedures.
The initial electrotransformation procedure was described by Sasaki et al. (Sasaki et al., 4th Symp. Lactic Acid Bacteria; Sasaki, Japanese Patent Office) and is outlined in Table 2. The optimized transformation procedure was as follows. Serial dilutions of a fresh bacterial culture were inoculated into 100 ml of MRS and incubated at 42°C. After overnight growth, a culture at the beginning of the stationary phase (optical density at 600 nm [OD600], 1.7) was harvested by centrifugation. The bacteria were washed once with 100 ml of cold electroporation buffer (EB) (0.4 M sucrose [Merck, Darmstadt, Germany], 1 mM MgCl2 [Merck], 5 mM KH2PO4 [Merck]; pH 6) and twice with 30 ml of cold EB. The cells were then resuspended in EB to an OD600 of about 50. The cell suspension was incubated at 45°C for 20 min and then kept on ice for 10 min. For electroporation, 80 µl of the cell suspension was mixed with 0.3 to 2µg of plasmid DNA. The sample was subjected to a 1-kV, 800-
, 25-µF electric pulse in a 0.2-cm cuvette by using a Gene Pulser and a Pulse Controller apparatus (Bio-Rad, Richmond, Calif.). Two milliliters of milk medium (0.2 M sucrose, 5% skim milk [Regilait, Saint-Martin-Belle-Roche, France], 0.1% yeast extract [Difco], 1% Casamino Acids [Difco], 25 mM MgCl2) was immediately added, and the cells were incubated for 3 h at 37°C before they were plated on MRS supplemented with the appropriate antibiotic. The plates were incubated at 37°C for 2 to 3 days under anaerobic conditions.
|
View this table: [in a new window] |
TABLE 2. Outline of the electroporation procedures
|
DNA techniques.
For DNA extraction, L. delbrueckii subsp. bulgaricus cells were first protoplasted by 45 min of incubation at 37°C in TES (50 mM Tris [pH 7], 20 mM EDTA, 0.2 mM sucrose) containing lysozyme (10 mg/ml) and mutanolysin (70 U/ml). Plasmid extraction was then performed by the alkaline lysis procedure (7), followed by cesium chloride density gradient centrifugation (35). After lysozyme and mutanolysin treatment, total DNA was extracted as previously described (18). Plasmids were extracted from E. coli, B. subtilis, L. reuteri, and Lactococcus lactis by the alkaline lysis procedure. Restriction enzyme digestion and gel electrophoresis were carried out as recommended by the suppliers or by standard methods (35). DNA hybridization was performed as described by Southern (37). DNA probes were labeled with [
-32P]dCTP (ICN Biomedicals, Costa Mesa, Calif.) by using a random priming kit (Boehringer, Mannheim, Germany).
The DNA corresponding to the 16S rRNA was PCR amplified with primers W001 (5'-AGAGTTTGATCCTGGCTC-3') and W025 (5' -CACGTCCTTCATCGGCT-3') (21). Fluorescent sequencing was performed by using the recommendations of Perkin-Elmer Biosystems (Foster City, Calif.).
|
|
|---|
These findings indicated that (i) we were able to reproducibly transform VI104 (although with variable efficiency) and (ii) the heterologous pLEM7 plasmid seemed to transform slightly more efficiently than pX3. Therefore, strain VI104 and plasmid pLEM7 were used to optimize L. delbrueckii subsp. bulgaricus electroporation.
Optimization of the electroporation procedure.
As mentioned above, several parameters can influence electroporation efficiency; we tested most of them as described below.
(i) Growth stage and medium effects.
In the initial procedure, 10 ml of cells from an overnight culture (OD600,>2) was centrifuged, and the cells were suspended in 100 ml of MRS at pH 5.5. The suspension was incubated for 2 h at 42°C prior to the washing steps (Table 2). We checked whether this 2-h incubation step could be eliminated. Serial dilutions of a bacterial culture were grown overnight at 42°C. An overnight culture whose pH was 5.5 (OD600, 0.8) was harvested and prepared for electroporation with or without the incubation step. Cells that were incubated at pH 5.5 gave an average of
50 transformants per µg of DNA, compared to
300 transformants per µg of DNA for cells that were not incubated at pH 5.5. In further experiments, cells were harvested at different OD600s from the early exponential phase to the early stationary phase and electroporated with or without the pH 5.5 incubation step. Our results showed that the transformation efficiency was always higher when the cells were not incubated at pH 5.5 prior to electroporation (data not shown). These experiments also revealed that the transformation efficiency was as high as 750 transformants per µg of DNA when cells harvested at the beginning of the stationary phase (OD600, 1.7) were used, whereas cells harvested in the exponential phase (OD600, 0.2 to 1.0) or in the stationary phase (OD600, >2.0) yielded lower transformation efficiencies (<200 transformants per µg of pLEM7).
Glycine was added at several concentrations to the growth medium used for overnight culture in order to determine whether it weakened the cells. None of the glycine concentrations tested significantly improved the transformation efficiency, but we noticed a less-than-twofold improvement when we used VI104 grown in MRS containing 0.1% glycine.
In summary, using cells grown in MRS containing 0.1% glycine until the OD600 was 1.7 and omitting the pH 5.5 incubation step shortened the procedure and improved the transformation efficiency at least 10-fold. These conditions were used for the subsequent experiments.
(ii) Source and amount of plasmid DNA.
To facilitate plasmid preparation, instead of pLEM7 we used a derivative of pLEM7, pLEM415, an E. coli-L. reuteri shuttle vector (17). In order to identify the best E. coli strain to propagate the plasmid before its introduction into VI104, we tested three restriction-modification mutants of E. coli (see Materials and Methods). The average transformation efficiencies with pLEM415 prepared from L. delbrueckii subsp.bulgaricus and the average transformation efficiencies with pLEM415 prepared from E. coli were of the same order of magnitude (7.4 x 102 ± 4.5 x 102 transformants per µg). However, with DNA originating from GM1674 (dam dcm), the average transformation efficiency was 1 x 103 ± 0.4 x 103 transformants per µg. Such a slight difference cannot be attributed to restriction of DNA entering L. delbrueckii subsp. bulgaricus; it could have been due to differences in the monomer/multimer ratio in the plasmid DNA preparations. Using different amounts of DNA, we observed that the transformation efficiency reached a plateau between 0.3 and 2 µg of DNA; 1 to 1.5 µg of pLEM415 was used in the experiments described below.
(iii) Wash solution and EB.
Addition of sucrose (0.2 to 0.4 M), an osmotic stabilizer, to the original wash solution (Tris buffer, pH 7.0) improved the transformation efficiency. Since sucrose is more soluble and cheaper than raffinose, which was used in the original EB (designated EBb) (Table 2), we replaced raffinose with sucrose in the EB, which resulted in a buffer designated EBa (Table 2). Washing the cells with EBa reproducibly increased the transformation efficiency twofold. Although MgCl2 has been reported to improve electroporation by eliminating extracellular polysaccharides (1, 5), no increase in the transformation efficiency was observed with various concentrations of MgCl2. Finally, competent cells were washed three times with EBa before thermal treatment and electroporation.
(iv) Thermal treatment.
Induction of autolysis of L. delbrueckii subsp. bulgaricus at 45°C in EBb (pH 7.0) is used in the electroporation procedure to weaken the cell wall (T. Sasaki, Y. Asami, and N. Taketomo, 2nd Symp. Lactic Acid Bacteria, abstr. D18, 1987; Sasaki et al., 4th Symp. Lactic Acid Bacteria). The optimal parameters for autolysin induction and activity are different for different bacterial strains (10). In order to determine the optimal parameters for VI104, we tested EBa at several pH values (pH 7.0, 6.5, 6.0, 5.5, and 5.0) combined with various incubation times at 45°C. These experiments showed that the highest transformation efficiencies obtained with EBa at pH 5.5 and 5.0 were 25- and 190-fold lower, respectively, than the transformation efficiency obtained with EBa at pH 6.0. Next, we found that for any incubation time (from 7 to 75 min), the pH 6.0 buffer led to better transformation efficiencies than the pH 6.5 or 7.0 EBa (Fig. 1). The highest transformation efficiency (8 x 103± 1.3 x 103 transformants per µg) was obtained after 20 min of incubation in EBa at pH 6.0. In further experiments, the cell wall was weakened by induction of autolysis by using similar conditions.
![]() View larger version (34K): [in a new window] |
FIG. 1. Optimization of thermal treatment: effects of various incubation times at 45°C in pH 6.0 (black bars), pH 6.5 (grey bars), and pH 7.0 (white bars) EB on the transformation efficiency of VI104. The results are representative of the results obtained in five independent experiments. Cells were prepared by the modified procedure (Table 2). Electroporation was performed with pLEM415 DNA at 1.5 kV, 25µF, and 200 . T, transformants.
|
. The maximum transformation efficiency was reproducibly obtained when cells were subjected to 1 kV and 800
at 25 µF. In conclusion, the modifications of the electrotransformation procedure (Table 2) reliably increased the transformation efficiency of VI104 from a maximum of about 102 transformants perµg to several thousand transformants per µg (5 x 103 to 104 transformants per µg). The new procedure described here is reproducible for a batch of prepared cells, but a two- to fourfold variation of the transformation efficiency was observed when different electrocompetent cell batches prepared simultaneously were used.
Transformation with various plasmids. (i) Replicative plasmids.
Using the optimized transformation procedure, we tested several plasmids (Table 1) to determine their abilities to replicate and to be maintained in L. delbrueckii subsp.bulgaricus VI104. Based on the transformation efficiencies, three groups of plasmids were distinguished. These groups correspond to plasmids yielding (i) at least 102 transformants per µg, (ii) less than 102 transformants perµg, and (iii) no transformants (Table 1). The presence of free plasmids in the transformants was confirmed by DNA extraction and comparison with the initial DNA.
In addition to pLEM415, which was used in all our previous tests, six plasmids gave at least 102 transformants per µg (Table 1). They were pX3 and pJK650, both of which originated from L. delbrueckii, and the heterologous plasmids pNZ12, pG+host4, pGB305
, and pULP8. The copy numbers of these plasmids were variable in L. delbrueckii subsp. bulgaricus (Fig. 2). pJK650 and pX3 were easily detected by ethidium bromide staining of total DNA extracts, whereas pNZ12, pG+host4, and pGB305
had low copy numbers and were barely detectable. pULP8 was detected only by hybridization, which also revealed the presence of high-molecular-weight multimers (13) in the transformants.
![]() View larger version (46K): [in a new window] |
FIG. 2. Analysis of total DNA of L. delbrueckii subsp. bulgaricus VI104 transformants by agarose gel electrophoresis (A to D) and by hybridization with pULP8 as the probe (E). Total DNA extracted from one transformant (lanes 2) was compared with the following plasmids used for transformation (lanes 1): pLEM415 (A), pJK650 (B), pNZ12 (C), pG+host4 (D), and pULP8 (E). The arrowheads, the circles, and the star indicate the positions of the covalently closed plasmid monomers, the high-molecular-weight multimers, and the chromosomal DNA, respectively.
|
![]() View larger version (56K): [in a new window] |
FIG. 3. Analysis of total DNA of L. delbrueckii subsp. bulgaricus VI104 transformants by agarose gel electrophoresis (A) and by hybridization with pCU1882 as the probe (B). Total DNA extracted from one transformant (lanes 2) was compared with the following plasmids used for transformation (lanes 1): pGT633 (A) and pCU1882 (B). The arrowheads, the circle, and the star indicate the positions of the covalently closed plasmid monomers, the high-molecular-weight multimers, and the chromosomal DNA, respectively.
|
(ii) Site-specific integrative vector.
Plasmid pMC1 contains the attP site and the integrase (int) gene of the L. delbrueckii mv4 bacteriophage (16). Since no transformation procedure was available for L. delbrueckii at the time, Auvray et al. showed that pMC1 was able to integrate into the tRNASer gene of a wide range of lactic acid bacteria, such as Lactobacillus plantarum, L. casei, Lactococcus lactis, Enterococcus faecalis, and Streptococcus pneumoniae (3). As expected, pMC1 transformed VI104, although with a lower transformation efficiency (between 30 and 200 transformants perµg depending on the DNA preparation) than that of replicating plasmids, such as pX3 (9 x 103 transformants per µg). The values given above allowed us to estimate that the pMC1 integration efficiency was between 3 x 103 and 2 x 102 integrants per transformant of VI104. We verified by using Southern analysis that all transformants resulted from site-specific integration of pMC1 at the tRNASer locus of VI104 (Fig. 4). This plasmid provides an efficient way to generate stable DNA integration in L. delbrueckii subsp. bulgaricus.
![]() View larger version (31K): [in a new window] |
FIG. 4. Analysis of total DNA of L. delbrueckii subsp. bulgaricus VI104 pMC1 integrants. Total DNA from VI104 (lanes 1) and from five integrants (lanes 2 to 6) were digested with EcoRI and hybridized. (A) The pMC1 probe revealed a 1.5-kb EcoRI fragment on the chromosomal DNA of VI104 (lane 1) and two fragments (4.2 and 2.5 kb) corresponding to the two EcoRI junction fragments resulting from pMC1 integration (lanes 2 to 6). (B) The tRNASer gene probe revealed a 1.5-kb EcoRI fragment on the chromosomal DNA of VI104 (lane 1) and a 4.2-kb fragment, as expected after pMC1 integration.
|
Transformation of other L. delbrueckii strains.
Using the conditions optimized for VI104, we tested three L. delbrueckii subsp. bulgaricus strains (ATCC 11842, CNRZ397, and CNRZ1057) and four L. delbrueckii subsp.lactis strains (CNRZ327, CNRZ700, CNRZ1003, and CNRZ1059) for transformation with pLEM415 and pJK650. Only two strains gave transformants. L. delbrueckii subsp. bulgaricus ATCC 11842 was transformed only by pJK650, at a frequency of 2 x 103 ± 1 x 103 transformants per µg of DNA. CNRZ327, an L. delbrueckii subsp. lactis strain, was transformed at a frequency of about 50 ± 10 transformants per µg of DNA with both plasmids. Replicative forms of the plasmids were always detected in the transformants (data not shown).
The negative transformation results obtained with the other five strains tested might have been due to a nonoptimal electroporation protocol, although the possibility of restriction of incoming DNA cannot be eliminated. We noticed that most of the L. delbrueckii subsp. bulgaricus strains were phage resistant (T. Smokvina, personal communication), which could have been due to restriction. Similarly, the low transformation efficiency obtained with CNRZ327 when pJK650 or pLEM415 was used might have been due to a nonoptimal electroporation procedure or to restriction of the incoming DNA.
However, our results also suggest that transformation of L. delbrueckii might be strain dependent. First, L. delbrueckii subsp. bulgaricus strains ATCC 11842 and VI104 gave comparable transformation efficiencies with pJK650 but not with pLEM415. To evaluate the genetic similarity between these two strains, their 16S DNAs were sequenced. The sequences were found to be identical and corresponded to the sequence of L. delbrueckii subsp. bulgaricus. Although this result suggested that VI104 and ATCC 11842 are closely related, VI104 exhibited a broader plasmid range than ATCC 11842. Second, L. delbrueckii subsp.bulgaricus T-11 (36) was reproducibly transformed with pX3 and pJK650 at an efficiency of 104 transformants per µg, but no transformants were obtained with plasmids pNZ12 and pG+host5 (data not shown); in contrast, these four plasmids transformed VI104. This kind of observation is not limited to L. delbrueckii. Indeed, transformation efficiency is frequently strain dependent in various species of lactic acid bacteria, including L. sakei (5), L. casei, and L. plantarum (34). It has been proposed that in L. sakei (5) and Propionibacterium strains (27), plasmid replication may be strain specific. Similarly, in L. delbrueckii, differences in restriction-modification systems or in expression of host factors involved in plasmid replication could modify the transformation abilities of strains.
Conclusion.
Although there have been several reports of transformation of L. delbrueckii, the transformability of this species has been questioned many times on the basis of numerous unsuccessful attempts. For the first time, we describe a detailed and reproducible electroporation procedure which can be used for at least three L. delbrueckii strains, ATCC 11842, VI104, and CNRZ327. Using various strains, we also confirmed that the transformation abilities of strains vary. We suspect that the autolysis induction step is critical and has to be optimized for each strain in order to successfully electroporate L. delbrueckii.
Several plasmids which replicate efficiently in L. delbrueckii subsp. bulgaricus were also identified. Our data show that plasmids of different replication types are active in L. delbrueckii. Besides the L. delbrueckii replicons, whose replication mechanism was not determined (pBUL1 and pWS58), heterologous replicons of the theta type (pIP501) and the rolling-circle type (pWVO1Ts, pSH71, pLEM3, pLC2, and maybe pLP1) transform L. delbrueckii VI104 or CNRZ327. However, it may still be necessary to distinguish between plasmids originating from L. delbrueckii and heterologous plasmids. Plasmid pJK650 (from L. delbrueckii) transforms ATCC 11842 and CNRZ327, whereas the pLEM derivative (from L. reuteri) does not transform ATCC 11842 although it transforms VI104 and CNRZ327. The basis for this difference between endogenous and heterologous plasmids is not understood yet.
The replicative plasmids, the integrative vector pMC1, and the antibiotic resistance genes all provide a solid basis for development of genetic and molecular studies of L. delbrueckii.
Part of this work was supported by Rhodia Food (Texel) and Danone (Vitapole).
|
|
|---|
This article has been cited by other articles:
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Copyright © 2009 by the American Society for Microbiology. For an alternate route to Journals.ASM.org, visit: http://intl-journals.asm.org | More Info»