Previous Article | Next Article ![]()
Applied and Environmental Microbiology, October 2002, p. 4894-4899, Vol. 68, No. 10
0099-2240/02/$04.00+0 DOI: 10.1128/AEM.68.10.4894-4899.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Institut für Experimentelle und Klinische Pharmakologie und Toxikologie, Albert-Ludwigs-Universität Freiburg, D-79104 Freiburg,1 Institute of Physical Biochemistry, University of Witten/Herdecke, D-58448 Witten, Germany2
Received 29 March 2002/ Accepted 17 July 2002
|
|
|---|
97-kDa single-chain toxin which contains a 27-kDa enzyme domain harboring ADP-ribosyltransferase activity and a 70-kDa putative binding domain. Due to cytotoxicity toward bacterial cells, the 27-kDa enzyme fragment cannot be produced in Escherichia coli expression systems. However, a nontoxic 32-kDa N-terminal truncation of MTX can be expressed in E. coli and subsequently cleaved to an active 27-kDa enzyme fragment. In vitro the 27-kDa enzyme fragment of MTX ADP-ribosylated numerous proteins in E. coli lysates, with dominant labeling of an
45-kDa protein. Matrix-assisted laser desorption ionization-time-of-flight mass spectrometry combined with peptide mapping identified this protein as the E. coli elongation factor Tu (EF-Tu). ADP ribosylation of purified EF-Tu prevented the formation of the stable ternary EF-Tuaminoacyl-tRNAGTP complex, whereas the binding of GTP to EF-Tu was not altered. The inactivation of EF-Tu by MTX-mediated ADP-ribosylation and the resulting inhibition of bacterial protein synthesis are likely to play important roles in the cytotoxicity of the 27-kDa enzyme fragment of MTX toward E. coli. |
|
|---|
The mature MTX (without the putative signal sequence of 29 amino acid residues) is a 97-kDa protein (MTX30-870). MTX30-870 is processed into a 27-kDa N-terminal enzyme component (MTX30-264) and a 70-kDa C-terminal putative binding component (MTX265-870) by crude mosquito larval gut extracts or chymotrypsin. MTX30-870 enzyme activity is strictly dependent on proteolytic activation. Following proteolytic cleavage, the putative MTX binding component remains noncovalently bound to the enzyme component, thereby reducing enzyme activity. However, no repression is observed when the 27-kDa fragment is generated from a 32-kDa N-terminal fragment of MTX (MTX30-308), resulting in enzyme activity 150-fold higher than that of processed MTX30-870. The production of recombinant MTX30-264 in Escherichia coli is not possible due its severe toxicity toward the bacterial cell. This toxicity is dependent on the transferase activity of the enzyme, as catalytically inactive MTX30-264 constructs can be produced in E. coli (20).
In this study, we investigated the possible reasons for the toxicity of MTX toward E. coli. We identified the bacterial elongation factor Tu (EF-Tu) as one of the target proteins of MTX in E. coli cell lysates and showed the inactivation of EF-Tu by mono-ADP-ribosylation.
|
|
|---|
Cloning and purification of EF-Tu.
DNA was amplified from plasmid pEECAHis (coding for EF-Tu) by PCR with the following primers: EF-Tu sense, 5'-CGCGGATCCTCTAAAGAAAAGTTTGAACGTAC-3', and EF-Tu antisense, 5'-CCGGAATTCGCTCAGAACTTTTGCTACAAC-3'. The EF-Tu fragment was cut with BamHI and EcoRI, purified, and ligated to the digested pGEX-2TGL vector. This vector was previously designed in our laboratory (Freiburg) and is a modification of the pGEX-2T vector from Amersham Pharmacia Biotech, Freiburg, Germany. The vector contains an additional oligonucleotide in the multiple cloning site which codes for a glycine linker between the glutathione S-transferase (GST) residue and the inserted gene, enabling efficient cleavage of GST by thrombin. The construct was checked by DNA sequencing (ABI PRISM; Perkin-Elmer, Weiterstadt, Germany).
For the expression and purification of GST-EF-Tu, plasmids were transformed into E. coli TG 1. Cells were grown in Luria-Bertani medium to stationary phase at 37°C, harvested, resuspended in fresh medium containing 1 mM isopropyl-1-thio-ß-D-galactopyranoside, and incubated for 2 h at 30°C. Then, cells were harvested, lysed by sonication in 20 mM Tris-HCl (pH 7.4)-10 mM NaCl-5 mM MgCl2-1% Triton X-100-1 mM phenylmethylsulfonyl fluoride-5 mM dithiothreitol (lysis buffer), and purified by affinity chromatography with glutathione-Sepharose beads (Amersham Pharmacia Biotech). Loaded beads were washed twice with lysis buffer and twice with thrombin cleavage buffer (50 mM Tris-HCl [pH 7.4], 150 mM NaCl, 5 mM MgCl2). EF-Tu was cleaved with thrombin directly from the beads in thrombin cleavage buffer. Thrombin was removed with benzamidine-Sepharose beads (Amersham Pharmacia Biotech).
ADP-ribosyltransferase assay.
ADP-ribosylation was performed as follows: 2.5 µM cellular or recombinant EF-Tu- GDP or 12 µg of total E. coli cell lysate protein was incubated with 100 µM [32P]NAD and 50 nM MTX fragment for various time periods at room temperature in the presence of 1 mM dithiothreitol-2 mM MgCl2-50 mM Tris-HCl (pH 7.4) in a total volume of 20 µl. Toxin-free control experiments were performed in the presence of the storage buffer for MTX proteins (thrombin cleavage buffer). For the time course experiment, 300 nM recombinant EF-Tu and 100 nM MTX30-264 were used to achieve complete ADP ribosylation of EF-Tu. The reaction was stopped by the addition of Laemmli buffer and heating for 5 min at 95°C, and the samples were subsequently subjected to sodium dodecyl sulfate (SDS)-polyacrylamide gel electrophoresis (PAGE) by the methods of Laemmli (13). [32P]ADP-ribosylated proteins were detected with a PhosphorImager from Molecular Dynamics. Quantification of PhosphorImager data was performed with ImageQuant software.
Two-dimensional gel electrophoresis.
A [32P]ADP ribosylation assay with E. coli cell lysate (150 µg of total protein) and 1 µM MTX30-264 was performed in a total volume of 200 µl, followed by isoelectric focusing (IEF) with Immobiline DryStrips (Amersham Pharmacia Biotech), pHs 3 to 10, for first-dimension separation. IEF was carried out with a MultiphorII apparatus as described in the Amersham Pharmacia Biotech manual. In the second dimension, proteins were separated by SDS-PAGE and stained with Coomassie blue. Radiolabeled proteins were detected by autoradiography.
Mass spectrometry.
The radioactively labeled proteins were excised from the gel and destained for 1 h at 50°C in 40% acetonitrile-60% ammonium hydrogen carbonate (50 mM, pH 7.8) to remove stain, gel buffer, SDS, and salts. The gel plugs were subsequently dried by vacuum centrifugation. Thereafter, 20 µl of ammonium hydrogen carbonate solution containing 0.2 µg of trypsin was added, and digestion was carried out for 12 h at 37°C.
A saturated matrix solution of 4-hydroxy-
-cyanocinnamic acid in a 1:1 solution of acetonitrile- aqueous 0.1% trifluoroacetic acid was prepared and mixed with 2 µl of the proteolytic peptide mixture in equal parts. For internal calibration, 5 pmol of a human adrenocorticotropic hormone (18 to 39 amino acids) (mass, 2,465.20 Da; Sigma) and 5 pmol of human angiotensin II (mass, 1,046.54 Da; Sigma) were added to the matrix solution. Using the dried-droplet method of matrix crystallization, 1 µl of the sample matrix solution was placed on the mass spectrometer target and dried at room temperature, resulting in a fine granular matrix layer.
Matrix-assisted laser desorption ionization-time-of-flight (MALDI-TOF) mass spectrometry (MS) was performed with a Bruker Biflex mass spectrometer equipped with a nitrogen laser (
= 337 nm) to desorb and ionize the samples. Mass spectra were recorded in the reflector-positive mode in combination with delayed extraction. The computer program ProFound (Rockefeller University, New York, N.Y.) was used for protein identification. This program matches measured peptide masses to virtually trypsin-digested proteins in a database (peptide mapping).
Characterization of the ternary complex aminoacyl-tRNAEF-TuGTP.
Cellular EF-TuGDP (3 µM) was ADP-ribosylated by MTX30-264 (500 nM) in the presence of 100 µM NAD essentially as described above. ADP-ribosylated EF-Tu-GTP (final concentration, 1 µM) was prepared by incubation with 4 mM GTP, 5 mM phosphoenolpyruvate, and 250 µg of pyruvate kinase/ml in 40 µl of buffer A for 30 min at 37°C. Purified [14C]Phe-tRNAPhe (0.5 µM; 942 dpm/pmol) in 20 µl of buffer A was added, and the reaction mixture was placed on ice for 10 min. The reaction was carried out at 37°C, and at various time points, 10 µl of the reaction solution was transferred to trichloroacetic acid-soaked Whatman paper. After extensive washing with 5% trichloroacetic acid, the filter paper was dried, 2.5 ml of scintillation mixture was added, and nonhydrolyzed [14C]Phe-tRNAPhe was measured with a scintillation counter (Packard RT2500). Control assays were performed with wild-type EF-Tu but without ADP-ribosylation, with EF-Tu treated with catalytically defective MTX30-264E197Q (20), and in the absence of EF-Tu.
Binding of mant-GTP to ADP-ribosylated EF-Tu.
EF-TuGDP (4 µM) was incubated with 100 µM NAD and 500 nM MTX30-264. Next, ADP-ribosylated EF-Tu was incubated with 1 mM phosphoenolpyruvate and 100 µg of pyruvate kinase/ml in buffer A for 30 min at 37°C to form the ADP-ribosylated EF-TuGTP complex. The exchange of GTP with mant-GTP was accomplished by rapidly mixing 60 µl of the EF-Tu-GTP solution (1 µM) with 60 µl of a mant-GTP solution (10 µM) by using the stopped-flow technique (SX-18MV spectrometer; Applied Photophysics). The fluorescence of mant-GTP was excited via fluorescence resonance energy transfer from tryptophan 184 in EF-Tu excited at 280 nm and measured after passage through KV408 filters (Schott). Experiments were performed at 20°C, and the change in fluorescence was recorded over 10 s. Time courses (see Fig. 4) were obtained by averaging six or seven individual transients. The fluorescence at time zero was set to 1, and data were evaluated by fitting to a two-exponential function with characteristic apparent time constants (kapp) and amplitudes (A) according to the equation F = 1 + [A1 x exp(-kapp1 x t)] + [A2 x exp(-kapp2 x t)], where F is the fluorescence at time t. Calculations were performed by using SigmaPlot (Jandel Scientific).
![]() View larger version (25K): [in a new window] |
FIG. 4. mant-GTP binding of ADP-ribosylated EF-Tu (line 1) and native EF-Tu (line 2). The change in the fluorescence of mant-GTP upon binding of EF-Tu was monitored by using the stopped-flow technique. EF-Tu-GTP and mant-GTP solutions were preincubated with phosphoenolpyruvate and pyruvate kinase to minimize contamination with GDP. The values for kapp1 and kapp2 were calculated by fitting the data from the time courses to a two-exponential function.
|
|
|
|---|
45 kDa were predominantly radiolabeled (Fig. 1C).
![]() View larger version (36K): [in a new window] |
FIG. 1. [32P]ADP-ribosylation of E. coli proteins by MTX30-264. (A) Total E. coli cell lysates (12 µg) were incubated with thrombin cleavage buffer (control), MTX30-264 (50 nM), or MTX30-264E197Q (50 nM) in the presence of 100 µM [32P]NAD. Proteins were separated by SDS-PAGE, and labeled proteins were detected by phosphorimaging (shown). (B and C) E. coli cell lysates (150 µg) were incubated with MTX30-264 (1 µM) and [32P]NAD (100 µM) and subjected to two-dimensional gel electrophoresis. Proteins were detected with Coomassie blue (B) and then subjected to autoradiography (C). Two 45-kDa proteins (arrows) were excised from the gel and analyzed by MS, resulting in the identification of EF-Tu (Table 1) as a protein target for MTX.
|
45-kDa proteins from E. coli lysates were excised from the SDS gel and digested with trypsin. The resulting peptides were analyzed by MALDI-TOF MS. By use of the computer program ProFound, measured peptides of both proteins were assigned to E. coli EF-Tu (SWISS-PROT accession number P02990) with a sequence coverage of 25% (Table 1). It was not possible to elucidate the difference between the two EF-Tu protein spots by MALDI-TOF MS, as the measured peptide masses were the same. However, the differences might have arisen from altered mobility during IEF when EF-Tu was bound to different ligands. |
View this table: [in a new window] |
TABLE 1. Peptide dataa
|
![]() View larger version (34K): [in a new window] |
FIG. 2. [32P]ADP ribosylation of cellular EF-Tu and recombinant EF-Tu. (A) Cellular EF-Tu and recombinant EF-Tu (2.5 µM) were incubated alone (control) or with MTX30-264 (50 nM) or MTX30-264E197Q (50 nM) in the presence of 100 µM [32P]NAD for 30 min at room temperature. Proteins were separated by SDS-PAGE (upper panel), and labeling was detected by phosphorimaging (lower panel). Quantification of [32P]ADP-ribose incorporation revealed that 50% of the total amount of EF-Tu used in this assay was modified. (B) Recombinant EF-Tu (300 nM) was incubated with 100 nM MTX30-264 in the presence of 100 µM [32P]NAD in a total volume of 20 µl for the indicated times. The incorporation of [32P]ADP-ribose was detected after SDS-PAGE by phosphorimaging, and data were quantified with ImageQuant software. The extent of ADP-ribosylation is indicated as picomoles of ADP-ribose incorporated per picomole of EF-Tu. Data are given as means and standard errors (n = 3). The inset illustrates the phosphorimaging data from a representative experiment.
|
Functional effects of EF-Tu ADP-ribosylation.
EF-Tu in its GTP-bound state forms a stable complex with aminoacyl-tRNA, protecting the 3'end of aminoacyl-tRNA from hydrolysis (28). ADP-ribosylation of EF-Tu prevented the formation of a stable ternary complex with GTP and aminoacyl-tRNA, as indicated by the rapid hydrolysis of [14C]Phe-tRNAPhe (Fig. 3). Similar time courses of [14C]Phe-tRNAPhe hydrolysis were observed in the absence of EF-Tu or in the presence of ADP-ribosylated EF-Tu, indicating that ADP-ribosylated EF-Tu is inactive in aminoacyl-tRNA binding. EF-Tu treated with catalytically inactive MTX30-264E197Q was as active as native EF-Tu in protecting [14C]Phe-tRNAPhe from hydrolysis (Fig. 3).
![]() View larger version (16K): [in a new window] |
FIG. 3. ADP-ribosylation of EF-Tu prevents the formation of the stable ternary EF-TuGTPaminoacyl-tRNA complex. [14C]Phe-tRNAPhe (0.5 µM) was incubated with 1 µM EF-Tu-GTP ADP-ribosylated by MTX30-264 ( ) or 1 µM native EF-Tu-GTP ( ) in a total volume of 60 µl. As a control, the assays were performed in the absence of EF-Tu ( ) and in the presence of EF-Tu treated with catalytically inactive MTX30-264E197Q ( ). At the indicated times, 10-µl aliquots of the reaction mixtures were transferred to trichloroacetic acid-soaked filter paper, and the amount of precipitated [14C]Phe-tRNAPhe was quantified by scintillation counting. Time zero was set to 0% hydrolysis.
|
An arginine residue in EF-Tu is modified by MTX.
ADP- ribose-amino acid bonds can be characterized by their stability toward neutral 0.5 M hydroxylamine (1, 3). Whereas the ADP- ribose bond to an aspartate or cysteine residue is stable toward hydroxylamine, the ADP-ribose bond to an arginine residue has a half-life of
2 h (1, 12). The ADP-ribosylation of the small GTPase Rho (Asn41) by C3 exoenzyme (21) and that of actin (Arg177) by C2 toxin (24) were used for comparison. These toxins exclusively modify the Rho protein and actin, respectively. As shown in Fig. 5A, a time-dependent decrease in the signal of ADP-ribosylated actin was observed after 2 and 4 h of treatment with hydroxylamine, whereas the signal for ADP-ribosylated Rho remained largely unchanged. The signal intensity of ADP-ribosylated EF-Tu decreased after incubation with hydroxylamine, suggesting that an arginine residue in EF-Tu was modified (Fig. 5B).
![]() View larger version (32K): [in a new window] |
FIG. 5. Determination of the acceptor amino acid of MTX30-264. The stability of [32P]ADP-ribose-amino acid bonds formed by MTX30-264, C. botulinum C2 toxin (control), and Clostridium limosum C3 exoenzyme towards NH2OH was examined. (A) Platelet cytosol was incubated with C2 toxin and C3 exoenzyme in the presence of [32P]NAD. The reaction mixture was divided into equal parts andtreated with 0.5 M NaCl for 4 h or with 0.5 M NH2OH (pH 7.5) for 2 and 4 h. Proteins were separated by SDS-PAGE (upper panel), and labeled Rho and actin were detected by phosphorimaging (lower panel). (B) EF-Tu was incubated with MTX30-264 in the presence of [32P]NAD. The reaction mixture was divided into equal parts and treated with 0.5 M NaCl for 4 h or with 0.5 M NH2OH (pH 7.5) for 2 and 4 h. EF-Tu was analyzed by SDS-PAGE (upper panel) and phosphorimaging (lower panel).
|
|
|
|---|
45 kDa. Both protein spots were identified as E. coli EF-Tu. Cellular EF-Tu and recombinant EF-Tu were ADP-ribosylated by MTX30-264, supporting the MS findings. ADP-ribosylation of EF-Tu by MTX30-264 led to the incorporation of about one ADP-ribose residue per molecule of EF-Tu. EF-Tu is a bacterial translation elongation factor that delivers aminoacyl-tRNA to the A site of the ribosome during the elongation cycle of protein synthesis. ADP-ribosylation of EF-Tu prevents the formation of the stable ternary complex with GTP and aminoacyl-tRNA due to a deficiency in aminoacyl-tRNA binding. This functional inactivation of EF-Tu leads to the inhibition of protein synthesis and is likely to result in the retardation of cell growth and lethality. However, MTX30-264 ADP-ribosylated several substrates in E. coli cell lysates, an action which may have contributed to the cytotoxic effect.
All biglutamic acid ADP-ribosyltransferases so far studied attach ADP-ribose to arginine residues of their protein substrates (15). The instability of the ADP-ribose-amino acid bond in EF-Tu toward neutral hydroxylamine suggests the modification of arginine residues by MTX30-264-mediated ADP-ribosylation as well. ADP-ribose-asparagine bonds or ADP-ribose-cysteine bonds are stable toward neutral hydroxylamine, and so these amino acids can therefore be ruled out as acceptor amino acids (1, 5, 16). The exact arginine residue that is targeted by MTX30-264 in EF-Tu is not known yet, but possible candidates are currently under investigation.
Most ADP-ribosyltransferases are specific; i.e., they have only one specific eukaryotic target protein and exhibit no toxicity toward their host organisms. In contrast, MTX30-264 ADP- ribosylates several proteins in E. coli lysates. Also, in HeLa cell lysates (20) as well as in other eukaryotic cell lysates (unpublished observations), MTX30-264 modifies numerous proteins. Furthermore, Thanabalu et al. (22) reported that a nonactivated N-terminal MTX truncation (amino acids 30 to 493) modifies two proteins with apparent masses of 42 and 38 kDa in lysates of a Culex quinquefasciatus cell line. In contrast, the active MTX30-264 fragment used in our experiments led to the labeling of a large array of proteins in lysates of the same C. quinquefasciatus cell line, with predominant labeling of a 55-kDa protein (unpublished data).
So far, none of the labeled proteins in cell lysates other than those from E. coli could be assigned to an elongation factor. As reported previously (20), MTX30-264 leads to the rounding up of HeLa cells and the formation of actin-containing protrusions after 12 h. This effect is unlikely to be mediated by an alteration of the function of an elongation factor. Therefore, at least in HeLa cells, different protein targets of MTX seem to contribute to cytotoxicity. However, we cannot exclude the possibility that elongation factors may serve as additional substrates in eukaryotic cells as well. With respect to the sequence similarity between E. coli EF-Tu and the functionally equivalent human elongation factor 1 alpha (45% at the amino acid level), it seems possible that the latter serves as a substrate for MTX as well. Currently, investigations are ongoing to elucidate relevant substrates for MTX in eukaryotic cells.
ExoS from P. aeruginosa is another bacterial ADP-ribosyltransferase which modifies an array of proteins, with Ras as a preferred target (7). Furthermore, ExoS also targets numerous proteins in eukaryotic cells in vivo (17). However, the enzyme activity of ExoS depends on the presence of the eukaryotic 14-3-3 protein FAS (6, 9). The need for a eukaryotic activation factor may prevent possible harmful ADP-ribosylation activity in the bacterial host cell. The necessity for MTX enzyme activation by proteolytic cleavage may represent a protection mechanism for the toxin-producing B. sphaericus strain. Thus, in contrast to ADP-ribosyltransferases, which target specific proteins, the less specific toxins, such as MTX and ExoS, may use unique enzyme activation mechanisms to suppress toxicity in bacteria. Further investigations are necessary to elucidate the role of the putative binding component of MTX in the regulation of ADP-ribosyltransferase activity and target specifity. However, so far we have not found any differences in target specifity between MTX30-264 and the activated MTX holotoxin in vitro.
We thank Kirill Gromadski for help with the stopped-flow experiments.
|
|
|---|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Copyright © 2009 by the American Society for Microbiology. For an alternate route to Journals.ASM.org, visit: http://intl-journals.asm.org | More Info»