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Applied and Environmental Microbiology, November 2002, p. 5656-5662, Vol. 68, No. 11
0099-2240/02/$04.00+0 DOI: 10.1128/AEM.68.11.5656-5662.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
A. L. S. Lerayer,3 I. Mierau,1 M. Kleerebezem,1 and J. Hugenholtz1*
NIZO Food Research and Wageningen Centre for Food Sciences (WCFS), Ede, The Netherlands,1 State University of Campinas (UNICAMP),2 Instituto de Tecnologia de Alimentos (ITAL), Campinas SP, Brazil3
Received 25 April 2002/ Accepted 20 August 2002
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The typical yogurt flavor is caused by lactic acid, which imparts an acidic and refreshing taste, and a mixture of various carbonyl compounds like acetone, diacetyl, and acetaldehyde, the latter of which is considered the major flavor component (10, 11, 21, 29). The relatively high concentration of acetaldehyde (in the range of 5 to 21 mg/liter) found in yogurt must be due to a low utilization rate of this metabolite since the yogurt bacteria lack the main enzyme for acetaldehyde conversion into ethanol, alcohol dehydrogenase (12).
The production of acetaldehyde by LAB seems to be strain dependent. L. delbrueckii subsp. bulgaricus has been reported by some authors to be a greater acetaldehyde producer than S. thermophilus, whereas other authors have reported the contrary (21, 27). Although it is presently unclear what the major pathway for acetaldehyde production by LAB is, several metabolic pathways have been shown to lead to its formation (5, 24) and it is possible that more than one metabolic pathway operate simultaneously (Fig. 1). During yogurt fermentation, acetaldehyde can be produced directly from lactose metabolism as a result of pyruvate decarboxylation. It can be produced (i) directly via pyruvate decarboxylase or pyruvate oxidase or (ii) indirectly through the formation of the intermediate acetyl coenzyme A by pyruvate dehydrogenase or pyruvate formate lyase. Furthermore, acetaldehyde can be formed by the activity of deoxyriboaldolase, which degrades thymidine into acetaldehyde and glyceraldehyde-3-phosphate. Finally, while several amino acids can be converted into acetaldehyde via pyruvate as a metabolic intermediate, threonine can be directly converted into acetaldehyde and glycine by the activity of threonine aldolase (TA) (29).
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FIG. 1. Overview of the different metabolic pathways in LAB that could lead to acetaldehyde formation. Acetyl-CoA, acetyl coenzyme A.
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The aim of this work was to investigate the role and importance of SHMT in the production of acetaldehyde by S. thermophilus. It was observed that the main pathway for acetaldehyde formation in this microorganism is through the activity of SHMT since the inactivation of the encoding glyA gene led to the almost complete abolition of TA activity. This result indicates the absence of an alternative pathway for acetaldehyde production and thus establishes the importance of SHMT in the production of this key aroma compound. Overexpression of the glyA gene showed an increase in TA activity and in acetaldehyde and folic acid formation. These results indicate that, in S. thermophilus, SHMT with its TA activity constitutes the main pathway for acetaldehyde formation under our experimental conditions. These findings could be used to control and improve acetaldehyde production in fermented (dairy) products by using S. thermophilus as starter culture. They also allow the selection of natural S. thermophilus variants with improved flavor-forming characteristics and the improvement of acetaldehyde formation through the metabolic engineering of SHMT.
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TABLE 1. Bacterial strains and plasmids used and constructed in this study
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Construction of plasmids for disruption of the glyA gene.
An internal fragment of the glyA gene (505 bp) from S. thermophilus NIZOB130 was obtained directly from the genomic DNA by PCR amplification. The degenerated oligonucleotides used (5'-ACNAAYAARTAYGCNGARGG-3' and 5'-GGNCCNCKNARNSWYTTRTG-3', where N is A, C, G, or T; Y is C or T; R is A or G; K is G or T; W is A or T; and S is G or C) were designed based on the sequences of the known GlyA protein from different microorganisms (Fig. 2). The PCR product obtained was cloned in pGEM-T, generating the plasmid pNZ2300. The nucleotide sequence of this cloned fragment was analyzed with an ALFred DNA sequencer (Amersham Pharmacia Biotech, Roosendaal, The Netherlands). Sequencing reactions were performed with an AutoRead sequencing kit and initiated by using Cy5-labeled universal and reverse primers following the instructions of the manufacturer (Amersham Pharmacia Biotech). Sequence data were assembled and analyzed using the CLONE program, version I. Homology searches were performed by using the sequence similarity search program BLAST (22). The CLUSTAL method (8) was used for multiple alignments of sequences. The internal fragment of the glyA gene was isolated from plasmid pNZ2300 as an ApaI-SpeI fragment and then cloned into the vector pG+host9 previously digested with the same enzymes, yielding the plasmid pNZ2310. The vector pG+host9 contains a thermosensitive replicon (15).
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FIG. 2. Multiple alignments of the amino acid sequences encoded by glyA genes from S. thermophilus NIZOB130 (STH; a partial sequence with 178 amino acids): A. actinomycetemcomitans (ACTAC; 420 amino acids), B. subtilis (BACSU; 415 amino acids), B. japonicum (BRAJA; 432 amino acids), and E. coli (ECOLI; 417 amino acids). EMBL database accession numbers are shown in parentheses. Asterisks denote residues conserved among all sequences, and dots represent gaps introduced into a sequence for alignment. The amino acid sequences used for the design of degenerated primers to obtain a part of the glyA gene from S. thermophilus are boxed (highly conserved regions).
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glyA) and NZ2311 (AO54
glyA), and they were exclusively grown at 42°C to ensure stable integration of the vector.
Acetaldehyde determination.
Acetaldehyde was measured spectrophotometrically by using an acetaldehyde determination kit based on the enzymatic (acetaldehyde dehydrogenase) reduction of NAD to NADH (R-Biopharm GmbH). The acetaldehyde level was determined after 20 h of fermentation at 42°C; the inoculum used was 1.0% of a fresh overnight culture. All assays were performed at least in triplicate.
Enzymatic assay.
TA activity of SHMT was monitored with L-threonine as a substrate, and the enzyme activity towards L-threonine was measured as described by Wilkins et al. (33) with some modifications. This method basically measures the threonine-dependent formation of acetaldehyde over time by headspace gas chromatography. Cells were harvested in the exponential growth phase by centrifugation, resuspended in phosphate buffer, and subsequently lysed with a French pressure cell at constant pressure (900 lb/in2). The cell extracts should be kept on ice from this point until the end of the enzymatic assay. Cell debris was removed by centrifugation (4°C, 10,000 x g for 10 min), and the cell extract was used for the enzymatic assay. The reaction was performed at 42°C and terminated by the addition of 600 µl of hydrochloric acid (1 M). The acetaldehyde formed was measured spectrophotometrically (see above), and the specific TA activity was expressed in milliunits (1 mU is 1 nmol of acetaldehyde formed per minute per milligram of protein). Protein concentration was determined using a protein assay kit based on the method of Bradford (2) with bovine serum albumin as the standard (Bio-Rad Laboratories BV, Veenendaal, The Netherlands).
Folic acid determination.
The folic acid present in the cells was measured by a microbiological assay with a folate auxotrophic Lactobacillus casei strain (7). The method was adjusted for use with microtiter plates as described previously (9, 19).
Construction of a plasmid with the glyA gene under the control of the lacA promoter.
Isolation of the complete coding sequence of the glyA gene from S. thermophilus NIZOB130 was obtained directly from the genomic DNAs by PCR amplification. The reaction was carried out in a mixture containing 50 µl of 10 mM Tris-HCl (pH 8.55), 25 mM KCl, 5 mM (NH4)2SO4, 2 mM MgSO4, a 0.1 mM concentration of each deoxynucleoside triphosphate, 20 ng of each primer, 1 µg of the genomic DNA, and 0.5 U of Pwo polymerase (Roche Diagnostics Nederland BV, Almere, The Netherlands) at 94°C for 15 s, 55°C for 30 s, and 72°C for 2 min for a total of 30 cycles. The 3' and 5' ends of the primer had, based on published glyA gene sequences, the sequences 5'-GCGAAAACTGCAGCCTATTAGACCTCAAAG-3' and 5'-TATCCGCTCGAGTATTAATAGAGTGGGAAAGC-3', with restriction enzyme sites (XhoI and PstI) introduced to allow insertion into the vector pNZ276. The amplified PCR product obtained was digested with XhoI and PstI, separated by agarose gel electrophoresis, and purified with the Jetquick gel extraction kit (Genomed GmbH). The amplified DNA fragment (1.2 kb) containing the glyA gene sequence starting at the ribosome binding site was inserted downstream of the lacA promoter of pNZ276, yielding the plasmid pNZ2305. This construction was stabilized in E. coli, and the nucleotide sequence of the amplified glyA gene was determined (as described previously) to confirm that no mismatching had occurred during PCR amplification. The plasmid was isolated in large scale by using the Jetstar plasmid maxprep kit (Genomed GmbH), and the pure plasmid was electroporated into the two different strains of S. thermophilus, NIZOB130 and AO54.
Overexpression of the glyA gene in S. thermophilus.
A fermentation experiment was conducted with four strains of S. thermophilus, the wild-type strains NIZOB130 and AO54 and both of these strains harboring plasmid pNZ2305. They were all fermented in 1 liter of LM17 medium with 5 µg of chloramphenicol/ml when necessary during a 24-h period at 42°C. The decrease of the pH during incubation was continuously monitored with a pH meter microprocessor pMX300 (WTW, Weinheim, Germany). In order to follow the growth of S. thermophilus, several samples were taken during the incubation period and serial dilutions were made in sterile physiological salt solutions and deep-plated on LM17 agar. Plates were incubated for 48 h at 42°C, and microbial count data were expressed as the log of CFU per milliliter. Samples were taken (i) for the TA assay at the end of the exponential growth phase and (ii) to measure folic acid and acetaldehyde production after 24 h of incubation. All experiments and analyses were performed in triplicate.
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FIG. 3. Screening of S. thermophilus strains for acetaldehyde production in LM17 medium in the presence and absence of 10 and 25 mM L-threonine.
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FIG. 4. SHMT activity and acetaldehyde formation during fermentation in LM17 medium at 42°C. The numbers on the graph represent the different strains of S. thermophilus: 1, NIZOB103; 2, NIZOB129; 3, NZ2310; 4, NZ2311; 5, NIZOB125; 6, AO54-T; 7, NIZOB1122; 8, AO54; 9, NIZOB130; 10, NIZOB130-T, where T indicates that extra threonine (25 mM) was present during cultivation.
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To study the physiological role of the glyA gene, a knockout mutant was constructed. The chromosomal glyA gene was inactivated by gene disruption with site-specific, temperature-sensitive integration vector pNZ2310 in these two strains of S. thermophilus, NIZOB130 and AO54. The glyA mutation was confirmed in cells that were able to grow at 42°C under antibiotic selection. One colony of each strain was collected and checked by Southern blot analysis (the hybridization patterns obtained confirmed the integration of pNZ2310 at the glyA locus [data not shown]), and the collected mutants were named NZ2310 and NZ2311. TA activities and acetaldehyde production were determined for both glyA mutants in comparison with those of the respective parental strains (Table 2). Inactivation of the glyA gene resulted in the almost complete inactivation of TA activity in both strains, indicating that TA activity in S. thermophilus resides in SHMT encoded by the glyA gene. Furthermore, no detectable amount of acetaldehyde was produced by these strains during fermentation. The disruption of the glyA gene resulted in a sixfold reduction of the growth rate relative to those of the parental strains (data not shown). Moreover, the glyA mutation resulted in reduced acidification, reflected by a final pH of the culture of 5.2 relative to that of the wild type, which reached a final pH of around 4.5. The large amount of glycine present in LM17 medium (930 mg/liter) seems to preclude glycine limitation as the cause for this reduced growth rate and acidification. This conclusion was supported by the failure to restore the wild-type growth characteristics of the mutants upon the addition of extra glycine to the growth medium. The observed growth defect in the glyA mutants could be related to a malfunctioning in folate metabolism, since SHMT is a key enzyme in the regeneration of methyl tetrahydrofolate from tetrahydrofolic acid (3, 27). Interestingly, (intracellular) folate levels were elevated in both glyA mutants of S. thermophilus, NZ2310 and NZ2311, compared to those found in their parental strains (Table 2).
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TABLE 2. TA activity, acetaldehyde production, and folate production in the wild-type S. thermophilus strains NIZOB130 and AO54, the glyA-knockout strains NZ2310 and NZ2311, and the glyA-overexpressing mutants harboring pNZ2305
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SHMT (EC 2.1.2.1) is a pyridoxal phosphate- and tetrahydrofolic acid-dependent enzyme. TA (EC 4.1.2.5) is also a pyridoxal phosphate-dependent enzyme and catalyzes the interconversion of threonine and glycine plus acetaldehyde (31). The physiological role of TA is generally believed to be in the production of glycine (4). The observation that L. lactis strain Z8, which lacks TA activity, requires glycine for growth supports this hypothesis (25).
SHMT is an important enzyme involved in the folate-dependent interconversion of serine and glycine. Interestingly, the S. thermophilus strains that showed no detectable acetaldehyde formation during fermentation are the same strains that show low production of folic acid (34). SHMT is the most widespread glycine biosynthetic enzyme among plants, animals, and microorganisms. The conversion of serine to glycine serves as the major source of one-carbon units that are essential for the biosynthesis of purine, thymidylate, and methionine. Although SHMT from rabbit liver and lamb was shown to have TA activity, SHMT in mung beans, in E. coli, and in rats had no detectable TA activity. Therefore, the activity of cleaving threonine to glycine and acetaldehyde is not a general property of SHMT (20).
Several TAs (EC 4.1.2.5) encoded by the itaE gene have been isolated from different microorganisms. Amino acid sequence comparison of the encoded enzymes with SHMT enzymes encoded by glyA show that these different enzymes are not related (20). In order to detect and clone an itaE-like gene from S. thermophilus strains NIZOB130 and AO54, PCR was carried out with chromosomal DNA by using degenerate primers that were derived from alignments of different itaE genes. Although, different PCR conditions were tried, we were not able to amplify the itaE gene in the S. thermophilus strains. In addition, a BLAST search was done (http://www.biol.ucl.ac.be/gene/genome) in the almost complete genome sequence of S. thermophilus and this did not result in the identification of an itaE-like gene (Pascal Hols, personal communication). Once we were unable to detect itaE-encoded TA, it seemed logical to postulate that SHMT would be the only source of TA activity in S. thermophilus. This hypothesis was tested by disruption of the glyA gene.
This disruption in S. thermophilus led to (i) a complete loss of detectable TA activity, suggesting that S. thermophilus contains no other enzymes with TA activity, and (ii) a significant reduction in the growth rate, which could not be restored by supplementing the medium with glycine. Because SHMT plays a central role in folate and one-carbon-unit metabolism, this growth defect observed is most probably due to a disturbance in the supplying of one-carbon units for the biosynthesis of purines, thymidylate, and methionine (29).
Although some researchers suggest that the physiological role of SHMT may be related to the production of glycine for growth, in this work, the inactivation of the glyA gene did not lead to a specific requirement for glycine. Supplementation of LM17 medium with glycine could not restore growth. In S. thermophilus, the role of the glyA gene must be different from its role in E. coli. In E. coli, disruption of the itaE gene alone did not affect the growth rate while disruption of the itaE gene in combination with the glyA gene caused a significant decrease in the growth rate. This suggests that TA is not the major source of cellular glycine in the wild type but that it catalyzes an alternative pathway for glycine when SHMT is knocked out (14). In S. thermophilus, however, SHMT seems not to be involved in glycine supply, as our growth experiments clearly show.
In conclusion, we have shown that acetaldehyde formation in S. thermophilus is catalyzed by a secondary activity (TA) of SHMT, the key enzyme in folate turnover and one-carbon-unit metabolism. This finding enabled us to enhance TA activity and also acetaldehyde and folic acid production by the overexpression of glyA, the gene encoding SHMT. Future work is directed to further explore this enzyme activity and to make use of these findings for the improvement of fermented dairy products.
We gratefully acknowledge Willem de Vos for arranging and extending the fellowship for A. C. S. D. Chaves, Marke Beerthuijzen for helping with the cloning experiments, Patricia Ruas Madiedo for helping with the growth experiments, and Marjo Starrenburg for assistance in the folate and TA measurements.
Present address: Instituto de Productos Lacteos de Asturias (CSIC), Villaviciosa, Asturias, Spain. ![]()
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