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Applied and Environmental Microbiology, February 2002, p. 642-649, Vol. 68, No. 2
0099-2240/02/$04.00+0 DOI: 10.1128/AEM.68.2.642-649.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Center for Environmental Research and Environmental Technology (UFT), Department of Marine Microbiology, University of Bremen, 28359 Bremen, Germany,1 Microbial Ecology Section, Department of Microbiology, University of Groningen, 9751 NN Haren, The Netherlands2
Received 16 July 2001/ Accepted 6 November 2001
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In model coculture bioreactor experiments conducted by Eisenbeis (18), the successful cocultivation of Dehalospirillum multivorans and Desulfovibrio desulfuricans was demonstrated with sulfate and PCE as electron acceptors and with ethanol as electron donor. More recently, in a defined chemostat coculture study of Drzyzga et al. (15), the combined presence of sulfate and sulfate-reducing bacteria was reported to affect dechlorination of PCE mediated by a dehalorespiring anaerobe. Competition for shared electron donors (e.g., lactate) occurred and, particularly under sulfate-limiting and sulfate-depleted conditions, hydrogen equivalents from substrates used by the sulfate reducer were channelled to the dechlorinating anaerobe, which used these electron donors (hydrogen equivalents) along with the shared substrate (lactate) for PCE dehalorespiration and growth.
On-site studies by Chapelle (7) showed that reductive dehalogenation was mostly favored in methanogenic and sulfate-reducing zones and Drzyzga (unpublished results) also found that sulfate-reducing activity took place first in anoxic soil enrichments, soil slurries, and soil column experiments before dehalogenation could be detected. Finally, in addition to the aforementioned studies, a few further reports on co-metabolically mediated dehalogenation of halogenated organic compounds under sulfate-reducing conditions, but mostly with undefined mixed cultures and enrichments, have been described in the literature (see, for example, references 1, 3, 6, 8, 16, 24, 34, and 39). In many of these studies, significant dehalogenation of halo-organics has been observed (only) under very reduced anoxic conditions. These findings are supported further by the recently published calculations of Haas and Shock (28). These authors concluded that anaerobic microbially mediated degradation of various chloroethenes is especially favored under conditions at least sufficiently reducing to also promote sulfate reduction. Thus, syntrophic associations between sulfate-reducing bacteria and dehalogenating or dehalorespiring bacteria may be of great significance in anoxic, halo-organic-contaminated habitats but still require further investigation if effective clean-up strategies for polluted sites via bioremediation techniques are to be developed.
Much like various other dehalorespiring bacteria (e.g., Desulfomonile tiedje, Desulfuromonas chloroethenica, Dehalobacter restrictus, Dehalospirillum multivorans, and Dehalococcoides ethenogenes [12, 19, 22, 24, 26, 29, 34, 42]), the desulfitobacteria have attracted a great deal of interest over the past few years because they have considerable potential for the degradation of polyhalogenated soil and groundwater pollutants such as PCE, trichloroethene (TCE), carbon tetrachloride, and pentachlorophenol (1, 13, 14, 17, 19, 25, 30, 33, 38, 43). However, very little is known to date about biotic interactions between these dehalorespiring and sulfate-reducing bacterial species, which may interfere with the dehalogenation during anoxic degradation of chlorinated pollutants. For this reason we investigated the nature and details of the interaction between these two types of anaerobic organisms. We examined the possibility of PCE dehalorespiration of Desulfitobacterium frappieri TCE1 in strict dependence on the activity of sulfate-reducing bacterium Desulfovibrio fructosivorans at different sulfate concentrations in the presence of a substrate (fructose), which could exclusively be used by the sulfate reducer. Sulfate cannot be used as an alternative electron acceptor by Desulfitobacterium frappieri TCE1 and has no negative influence on PCE or TCE dehalorespiration when added in relatively high concentrations (up to 20 mM) to pure cultures of this anaerobe (23).
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For the continuous-culture studies, a bioreactor, which was constructed of glass, stainless steel, and viton tubing with a working volume of 1,000 ml, was operated at 34.5°C. The dilution rate was set to 0.02 h-1. The pH was measured daily and was constant during the 50-day incubation period due to the presence of the carbonate buffer used. The culture was continuously stirred at 250 rpm. To avoid accumulation of toxic hydrogen sulfide and volatile cis-dichloroethene (cis-DCE), the gas phase of the chemostat was flushed with N2-CO2 (80:20 [vol/vol]) at a flow rate of ca. 50 ml h-1.
Reactor setup.
Initially, the bioreactor was started under sulfate-reducing conditions with Desulfovibrio fructosivorans inoculated into the reactor. Two days later, a PCE pregrown culture of Desulfitobacterium frappieri TCE1 (taken from the exponential growth phase) was added to the bioreactor to give a coculture. Approximately 1 week later, the first of four different stable conditions was achieved with fructose (2.5 mM in the reservoir medium), which was exclusively consumed by Desulfovibrio fructosivorans as a source of carbons and electrons. The first stable condition was achieved with 1 mM sulfate as the electron donor for the sulfate reducer, which was stoichiometrically limiting relative to the fructose concentration. After an increase of the sulfate concentration to 2.5 mM from day 9 onward, the second stable condition was achieved. Sulfate was now offered in an equimolar concentration to carry out incomplete oxidation of the entire amount of fructose according to the following equation (9): C6H12O6 + SO42-
2CH3COO- + HS- + 2HCO3- + 3H+. In the third stable condition, sulfate was omitted from the reservoir medium (from day 19 onward) to allow fructose fermentation only. During these three stable conditions, PCE was present in the medium as electron acceptor for Desulfitobacterium frappieri TCE1. At day 32, PCE was omitted from the medium and at day 34, the methanogenic strain Methanobacterium formicicum was introduced to the culture liquid to replace the dehalorespiring strain and to demonstrate likely interspecies hydrogen transfer. After these changes of parameters, the fourth stable condition was obtained from day 42 onward. All stable conditions were kept for 6 to 8 days, which (according to the dilution rate of 0.02 h-1) corresponded to three to four complete volume changes of the liquid of the reactor.
Chemical determinations and further methods.
Organic acids and gases were analyzed by gas chromatography (with a flame ionization detector [FID] and a thermal conductivity detector [TCD], respectively) by using equipment and conditions described earlier (26, 27). Samples for gas measurements (0.5 ml) were taken directly from the gas phase of the bioreactor. Fructose concentrations were measured with a Pharmacia high-pressure liquid chromatograph equipped with a differential refractometer detector. The following conditions and materials were used: a OA HY Polyspher Column (Merck, Darmstadt, Germany) in a 65°C oven, an isocratic eluent (0.01 N H2SO4), a flow rate of 0.6 ml/min, and an injection volume of 25 µl. Chlorinated ethenes in the culture liquid were determined via triplicate headspace analyses by FID capillary gas chromatography (25). Bacterial optical densities were measured with a Biotron 101 colorimeter (Meyvis, Bergen op Zoom, The Netherlands) at a wavelength of 660 nm. Sulfide in the culture liquid was analyzed colorimetrically as described by Trüper and Schlegel (41). Sulfate was determined by precipitation with barium chloride (11). Cell numbers of the morphologically different strains were determined by counting individual cells directly with a light microscope and by using a Bürker-Türk counting chamber.
Chemicals.
All chemicals were obtained from commercial sources, and the highest purity available (>98%) was used.
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FIG. 1. Time courses of relevant parameters of the defined continuous cultures during the experiment with various sulfate and PCE concentrations in the reservoir medium. Culture conditions: stable condition 1 with 1 mM SO42- plus PCE; stable condition 2 with 2.5 mM SO42- plus PCE; stable condition 3 without SO42- and with PCE; stable condition 4 without SO42- and without PCE; pH 7.1 (±0.1); 34.5°C; dilution rate, 0.02 h-1; electron donor, 2.5 mM fructose. PCE was present at 170 (±20) µM (=100%). PCE was omitted from the reservoir medium at day 32 (as indicated by the arrow). Methanobacterium formicicum was added at day 34. (A) Optical densities ( ) and sulfide concentrations ( ) in the liquid. (B) Relative cell numbers in the percentages of Desulfitobacterium frappieri TCE1 ( ), Desulfovibrio fructosivorans ( ), and Methanobacterium formicicum () (for 100%, see total values in Table 2). (C) Concentrations of fructose ( ) and acetate ( ) in the culture liquid during sulfate reduction and/or fermentation by Desulfovibrio fructosivorans. (D) Concentrations of PCE ( ), TCE ( ), and cis-DCE ( ) in the culture liquid.
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90% of total cell numbers; Fig. 1B), leading to complete reduction of sulfate to sulfide (Fig. 1A). The optical density of the coculture at 660 nm was relatively low (i.e.,
0.15) because growth was limited by SO42-and fructose was not completely consumed (Fig. 1C). In contrast, dehalorespiration of all of the available PCE with concomitant conversion to cis-DCE was accomplished (see Fig. 1D). The use of PCE as an electron acceptor for the growth of strain Desulfitobacterium frappieri TCE1 resulted in a small but stable population of this anaerobe (
10% of the total cells; Fig. 1B). Table 1
(condition 1) shows that the main part of the consumed fructose (1 mM) was oxidized during sulfate reduction and that a less significant part (0.3 mM) was used fermentatively with the release of H2 equivalents that stimulated PCE dehalorespiration and growth of Desulfitobacterium frappieri TCE1. Obviously, a combination of both sulfate reduction and fermentation was carried out by the sulfate-reducing bacterium during this first stable condition in the coculture. Nevertheless, no hydrogen was detectable in the gas phase of the bioreactor when we conducted a gas stop-flow experiment for 9 h during this stable condition (i.e., condition 1 [data not shown]). |
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TABLE 1. Carbon balances of fructose (2.5 mM) and acetate during sulfate reduction and fermentation by Desulfovibrio fructosivorans in mixed cultures under the four different stable conditions
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98% of the Desulfovibrio fructosivorans cells versus
2% of the Desulfitobacterium frappieri TCE1 cells; Fig. 1B). The highest optical density during the entire experiment was noted under stable condition 2 (A660
0.37; Fig. 1A). Fructose was almost completely consumed, leading to the highest acetate production compared to the other stable conditions (Fig. 1C). The results presented in Table 1 (condition 2) clearly show that the fermentation of fructose was not carried out by the sulfate reducer and, as a consequence of almost no production of H2 equivalents, unused PCE accumulated, and only trace amounts of TCE and cis-DCE were detected in the culture liquid (Fig. 1D). As under condition 1, hydrogen in the gas phase of the reactor was not detected with this stable condition 2 (data not presented).
Continuous culture with fructose in the absence of sulfate.
At day 19, sulfate, as the electron acceptor for the Desulfovibrio species, was omitted and, 1 week later, stable condition 3 was obtained (Fig. 1A). PCE was now the single available electron acceptor remaining in the coculture. Under this most interesting stable condition, the ratio between the two populations changed significantly compared with that of the two earlier ones. As shown in Fig. 1B, the relative contribution of the sulfate reducer decreased to 74% of the coculture, and the cell numbers of the dehalorespiring species increased to a total of 26% (see also Table 2).
The decrease of the total cell numbers of the sulfate reducer resulted in a decrease of the optical density of the coculture (A660
0.11; Fig. 1A). This was compensated for only to some extent by the increased total cell numbers of the dehalorespiring species. Table 2 summarizes the actual cell numbers of the individual populations in the mixed cultures under stable conditions 1 to 4. In the absence of sulfate, all PCE was dechlorinated to cis-DCE without the occurrence of further intermediates (Fig. 1D). Similar to stable condition 1, fructose was not completely consumed, and the acetate production was in an identical amount (
2.1 mM; Fig. 1C). Table 1 (condition 3) clearly shows that fermentation of ca. 0.8 mM fructose was the only metabolic process carried out in the coculture. Under stable condition 3 hydrogen was detected in the gas phase of the reactor for the first time. This gas accumulated during a 9-h gas stop-flow experiment (data not presented).
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TABLE 2. Culture cell counts of Desulfitobacterium frappieri TCE1, Desulfovibrio fructosivorans, and Methanobacterium formicicum at different optical densities during different stable conditions
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30 to
62 µmol/liter) and the hydrogen concentration (from
70 to
190 µmol/liter) increased significantly. Obviously, H2 was made available in excess by the fermentative activity of the sulfate reducer, because it was not used completely by the methanogenic strain, resulting in the accumulation of this gas. During this fourth stable condition a few interesting additional observations were made. The optical density of the complete culture increased again significantly to an A660 of
0.28 (Fig. 1A) and the sulfate-reducing species regained a very high percentage of total cell numbers (
94%; Fig. 1B and Table 1). As shown in Fig. 1C and as summarized in Table 1,
80% of fructose was consumed by fermentation (ca. 0.6 mM remained), and the concentration of acetate increased to ca. 3.5 mM. We suppose that the strong stimulation of growth of Desulfovibrio fructosivorans was due to the presence of two hydrogen-consuming strains (Methanobacterium formicicum and remaining cells of Desulfitobacterium frappieri TCE1; see Table 2) as syntrophic partners. However, the accumulation of hydrogen (as presented in the gas stop-flow experiment; Fig. 2) clearly showed that much more H2 was produced than consumed by the syntrophic partners. Obviously, hydrogen was kept at a sufficiently low level that fructose could be fermented by Desulfovibrio fructosivorans with the release of H2 equivalents subsequently used by the methanogenic and the dehalorespiring species, resulting in a stable triculture (Fig. 1B). Interestingly, the microscopic picture revealed an intimate contact between the sulfate reducer and the methanogen since nearly every cell of Methanobacterium formicicum was surrounded by high numbers of Desulfovibrio fructosivorans cells, indicating a tight syntrophic association between the two strains. The possibility that part of the transfer of the reducing equivalents was in the form of formate cannot be excluded completely, especially if it was consumed very rapidly and so never detected in the bioreactor liquid by the methods used here.
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FIG. 2. Accumulation of hydrogen ( ) and methane ( ) in the reactor gas phase of the continuous triculture during a 9-h gas stop-flow experiment in stable condition 4 (which was with Methanobacterium formicicum). Conditions are as described in the legend of Fig. 1.
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12 µM PCE). The reason for that might be a thin biofilm, which had been developed on the inner glass wall of the bioreactor during the long incubation time of the entire study. This biofilm was observed for the first time at the end of the second stable condition (at day 20) and may have functioned as a depository of PCE and therefore as a continuous source for available electron acceptor for the dehalorespiring strain after the exclusion of PCE from the reservoir medium. As a consequence of the development of this biofilm, the cell counts of all strains as listed in Table 2 may be slightly underestimated. |
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The production of hydrogen by the sulfate-reducing strain occurred only at low sulfate concentrations, under sulfate-depleted conditions, or in the absence of sulfate and excess of fructose. Various studies in the past have shown that sulfate-reducing bacteria (for example, Desulfovibrio vulgaris, Desulfovibrio gigas, and Desulfovibrio desulfuricans) are able to metabolize substrates such as lactate to acetate, CO2, and H2 when grown in the absence of sulfate or in media with low sulfate concentrations, in syntrophic association with H2-consuming bacteria keeping the hydrogen partial pressure low (for example, Desulfovibrio vulgaris with Methanosarcina barkeri or Desulfovibrio fructosivorans with Methanospirillum hungatei [5, 6, 9, 40]). It was also found that a few Desulfovibrio species can either utilize or produce hydrogen (mediated by reversible hydrogenases or two different hydrogenases) during the degradation of organic matter (for example, Desulfovibrio vulgaris, Desulfovibrio gigas, Desulfovibrio salexigens, and Desulfovibrio baculatus [20]). It is thus interesting that Pankhania et al. (36) found, with Desulfovibrio vulgaris (strain Marburg) grown on lactate, that in the presence of sulfate, the H2-evolving system was not completely suppressed and led to a minor loss of reducing power as H2.
We therefore suggest that Desulfovibrio fructosivorans used the substrate fructose fermentatively according to the equation C6H12O6 + 4H2O
2CH3-COO- + 2HCO3- + 4H+ + 4H2 as described by Cord-Ruwisch et al. (10). This pathway of hexose fermentation via acetate, carbon dioxide, and hydrogen also appears in homoacetogenic bacteria (10). Desulfovibrio fructosivorans used the hexose fermentatively, thereby producing hydrogen and growing in a syntrophic association together with the dehalorespiring Desulfitobacterium frappieri strain TCE1. Our findings here and a those of a few earlier reports on the occurrence of sulfate-reducing bacteria in coculture with dehalogenating bacteria (see above and references 1, 6-8, 15, 16, 23, and 32) may indicate the possible ecological function of sulfate reducers as hydrogen-providing organisms in strictly anoxic environments that are polluted by halo-organic compounds. Therefore, it is important to note that bacterial dehalogenation and/or dehalorespiration of halo-organic compounds may be indirectly stimulated by the activity of (fermenting) sulfate reducers under sulfate-limiting or sulfate-depleted conditions that often appear in freshwater and soil environments.
The ecological importance of hydrogen as electron donor for dehalorespiration and/or dehalogenation of chloroorganic compounds, as well as the competition for hydrogen in anoxic habitats are frequently described in the literature (2, 10, 21, 37, 44). Some of these earlier studies and the recently published results of Löffler et al. (31) indicate that organochlorine-reducing bacteria can be excellent competitors for H2 in anoxic environments and may be the predominant hydrogenotrophic organisms in organochlorine-contaminated sites. Apparently, these bacteria are able to maintain H2 concentrations below the threshold H2 concentrations that would allow sulfate reduction or methanogenesis. Hence, chlororespiring bacteria may very well abound in anoxic environments as long as reductive dechlorination is not limited by the concentration and bioavailability of chlorinated compounds serving as their terminal electron acceptors (31). Our findings indicate that hydrogen was indeed the electron donor used for dehalorespiration of PCE mediated by Desulfitobacterium frappieri TCE1, which was channeled from a readily used substrate such as fructose as the primary electron donor for other bacterial species.
Slowly degradable hydrogen-releasing compounds such as polylactate esters, paper or wood chips, compost extract, or other natural organic matter (especially propionic acid) which deliver H2 continuously over long time periods had already been shown in some studies to be excellent substrates for regulating the supply rate of the electron donors for bioremediation purposes (21, 37, 44). This is in agreement with results obtained with coculture studies of Desulfitobacterium frappieri TCE1 with Desulfovibrio gigas on propanol or with Desulfobulbus propionicus on propionate, which also showed significant PCE dehalorespiration by strain TCE1 via substrates (propanol and propionate in these cases) not directly used by the dehalorespiring strain (O. Drzyzga et al., unpublished results). These results demonstrate that possibly a wide range of substrates (sugars, fatty acids, alcohols, and perhaps also aromatic compounds) not directly used by a dehalorespiring bacterium can be used indirectly for dehalorespiration and growth via interspecies hydrogen and acetate transfer mediated by sulfate-reducing bacteria. Environmentally, a consortium of sulfate-reducing and dehalogenating bacteria may therefore be important with respect to the cleanup of organochlorine-contaminated ecosystems, especially at sites with low sulfate concentrations (e.g., freshwater and soils) that are polluted by both halogenated compounds and heavy metals due to the simultaneous precipitation of these metals as metal sulfides.
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