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Applied and Environmental Microbiology, May 2002, p. 2436-2444, Vol. 68, No. 5
0099-2240/02/$04.00+0 DOI: 10.1128/AEM.68.5.2436-2444.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Department of Microbiology University of New Hampshire, Durham, New Hampshire 03824-2617
Received 17 October 2001/ Accepted 15 February 2002
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Since soluble environmental humic compounds mediate electron transfer to iron minerals (19), one plausible biological mechanism by which DMRB can shuttle electrons to minerals is through the production of a polyquinoid humic-like metabolite. The basidiomycete Cryptococcus neoformans uses melanin, a humic-like compound, to reduce soluble Fe(III) to Fe(II) for assimilation (26). Melanin has electrochemical properties which include the ability to act as an amorphous semiconductor, a threshold switch, an electron donor, and an electron acceptor (21, 22, 23, 30). These properties, along with its chemical and functional similarities to other humic compounds (34), led us to hypothesize that melanin is produced by facultatively anaerobic DMRB in the genus Shewanella. Shewanella colwelliana produces melanin by converting tyrosine to homogentisic acid (HGA) with the enzyme p-hydroxyphenylpyruvate dioxygenase (6, 12, 16, 32, 33). HGA is excreted, auto-oxidized, and self-assembled into the quinone-containing polymer, melanin (6, 9, 43). More specifically, this type of melanin is called pyomelanin (43) and is differentiated from other types of melanin because pyomelanin is derived from HGA but not from dihydroxyphenylalanine (DOPA) (43). We hypothesized that melanin is produced by facultatively anaerobic DMRB and could serve as a terminal electron acceptor as well as a soluble electron shuttle to iron minerals, thereby offering a significant growth and energetic advantage to these DMRB. Here we report results that support this hypothesis.
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Melanin production was also evaluated under anaerobic growth conditions according to the previous protocol, except that the medium also contained 30 mM fumarate as a terminal electron acceptor and medium preparation was conducted under anaerobic conditions. After 7 days of incubation the melanin content of the cell supernatant fluid was analyzed spectrophotometrically as above, first under anaerobic conditions and then after vigorous aeration. Aeration was used to facilitate auto-oxidation of any melanin precursors present.
Pigment preparation.
A 5-liter culture of S. algae BrY was grown for 12 days in LBSM supplemented with 2 g of tyrosine liter-1 as described above. Pigment production commenced by 72 h and continued to intensify until day 12, when pigment production stabilized, as measured spectrophometrically as described above. For partial purification of melanin (9, 10), the cell supernatant fluid was acidified with 6 N HCl to a pH of <2.0, and it was allowed to precipitate for 4 h at 20°C. The concentrated melanin was transferred to 8-kDa dialysis tubing and dialyzed for 24 h in dH2O with four changes of water during that time. The dialyzed melanin was then dried at 60°C and powdered prior to storage under nitrogen gas in glass vials which served as the melanin stock. A pure, chemically derived form of melanin (HGA melanin) was used as a control compound in some experiments. This chemically derived melanin was similar to melanin produced by S. algae BrY (see Results). HGA melanin was produced in vitro by auto-oxidation of HGA (Sigma Chemical Co., St. Louis, Mo.) which was stirred constantly for 7 days in dH2O with the pH adjusted to 10 with 10 N NaOH as described previously (32). The HGA melanin was concentrated and dried as described above. Bacterial and HGA melanin (2 g liter-l) demonstrated optical densities (400 nm) of 3.5 and 3.2, respectively. For use in experiments, dried melanins (bacterial and HGA melanin) were dissolved in dH2O with its pH adjusted to 12 with 10 N NaOH. After melanin was in solution, the pH was adjusted to 7.0 by the addition of 1 N HCl and diluted to a volume of 100 ml. Total iron concentrations were <1 µmol g of bacterial and HGA melanin-1, as determined by atomic adsorption spectroscopy. Aliquots of this concentrated stock solution were diluted as needed.
Evaluation of melanin pigment. (i) Chemical characterization of pigment.
Chemical analyses, following the conventional protocol for melanin determination (10, 42), were conducted on solutions and dried bacterial pigment and HGA melanin as described above.
(ii) Quinone assay.
The presence of quinones in the cell-free melanin solutions was determined by the nitroblue tetrazolium-glycinate assay (28). The reagents, which consisted of 300 µl of 2 M potassium glycinate (pH 10) and 1 ml of 0.24 mM nitroblue tetrazolium dissolved in 2 M potassium glycinate (pH 10), were added to 100 µl of cell culture supernatant. Reagents were stored on ice until use. The mixture was incubated at 28°C in the dark for 1 h, and absorbance was read at 530 nm. In addition, concentrated, dried pigment (see below) was dissolved in dilute NaOH (pH 10) and aliquoted into dH2O to concentrations of 0.1 to 1.0 mg liter-1. The response with this assay was linear, with an r2 of 0.9937 and a slope of 0.729, and was consistent with that obtained with other quinoid compounds (28).
(iii) FTIR spectroscopy.
Dried, concentrated, dialyzed bacterial melanin and HGA melanin were lyophilized for 24 h. Fourier transform infrared (FTIR) spectra of lyophilized melanins in KBr disks were recorded with an FTIR spectrophotometer (model 520; Nicolet Instruments, Madison, Wis.) with a mercury-cadmium-telluride detector, against a reference of a nonabsorbing KBr matrix (1, 9).
MW analysis.
Concentrated melanin and HGA melanin (final concentration, 2 g liter-1) were dissolved in dH2O by the addition of 1 N NaOH to a pH of 12, and this solution was neutralized with 1 N HCl to a final pH of 7.0. The molecular weights (MW) of the solutions were determined by high-speed sedimentation (44). Experiments were conducted at 20°C in a Beckman XL-I Ultracentrifuge at 35,000 rpm using absorbance detection. For each sample, three loading concentrations, ranging from an optical density of 0.5 to 1.50 in PIPES buffer and 100 mM NaCl, were examined. Solvent density (1.0017 g ml-1) was calculated using the Sednterp program (17) and an assumed partial specific volume of 0.71 ml g-1 was used in MW calculations. Data were fitted using the NONLIN program (15).
Hydrogen oxidation study.
Aerobic cultures of S. algae BrY were grown in tryptic soy broth (30 g liter-1) for 15 h, at 28°C with shaking (150 rpm). The cells were harvested by centrifugation (8,000 x g, 4°C, 20 min) and washed twice with anaerobic 30 mM sodium bicarbonate buffer under a nitrogen atmosphere. Bacterial melanin was added (final concentration, 2 g liter -1) to 30 mM sodium bicarbonate buffer (pH 7.2), and the mixture was made anaerobic by boiling and cooling under a constant stream of 80% N2-20% CO2. The mixture was transferred anaerobically to serum vials and kept under the same anaerobic atmosphere, after which it was autoclaved. Washed cells, under a nitrogen atmosphere, were added anaerobically to the above mixture to a final density of 109 ml-1. Hydrogen gas (10 kPa) served as an electron donor and was added aseptically to vials with a syringe fitted with a sterile 0.22-µm-pore-size filter. Vials were incubated with agitation (150 rpm) in the dark at 28°C. At different time intervals, samples were removed for analysis.
Melanin reduction assay.
To quantify melanin reduction, 1 ml of cell supernatant fluid was added to 50 µl of 10 mM soluble ferric citrate and the mixture was incubated anaerobically for at least 15 min, as described previously for humic compounds (19). In this procedure, reduced melanin reduced Fe(III) to Fe(II), which was quantified spectrophotometrically with ferrozine (19). The ability of reduced melanin to reduce 1 mM of Fe(III) to Fe(II) is defined as 1 meq of reduced melanin.
Melanin reduction of insoluble Fe(III) oxide.
Bacterial melanin which was previously reduced during the terminal electron acceptor study was centrifuged anaerobically (8,000 x g, 20°C, 20 min) to remove cells. One milliliter of cell-free melanin was added to 200 µl of 6 mM insoluble HFO, and the mixture was incubated at 20°C under anaerobic conditions for 90 min. The amount of Fe(II) produced from the reduction of HFO was determined as described above. HGA melanin, reduced during the growth assay (see below), was also evaluated for HFO reduction ability, as above.
HFO reduction rate as a function of melanin concentration.
HFO reduction over time, by cell suspensions of S. algae BrY and H2 (prepared as described above), was determined with various concentrations of bacterial melanin. HFO reduction to Fe(II) was measured as described above. HFO reduction rates were calculated with the following equation: a = ai (1 - e-kt), where ai is the maximum HFO reduction [as millimolar Fe(II) produced] and k is the HFO reduction rate (hour-1). Fe(II) concentrations were normalized by subtracting Fe(II) values of the control (no added melanin). The normalized Fe(II) values were then fitted to the Michaelis-Menten equation: k = kmax(S/km + S), where k is the HFO reduction rate (hour-1), kmax is the maximum HFO reduction rate (hour-1), S is the melanin concentration (grams liter-1), and km is the half-saturation constant for melanin (grams liter-1). Nonlinear curves were determined with Sigma Plot curve-fitting software (version 7.1; Jandel Co., Chicago, Ill.).
Cytochrome assay.
S. algae BrY cells grown aerobically in LBSM were washed (30 mM sodium bicarbonate buffer) and concentrated under N2 (approximately 109 cells ml-1). Reduced cytochrome scans were generated as previously described (13) by placing an air-oxidized cell suspension in the reference cell of a dual-beam spectrophotometer (Shimadzu UV-2401 PC) with either a dithionite- or H2-reduced cell suspension in the sample cell. For determination of the effect of melanin on the cytochromes, 20 µl of an anaerobic oxidized melanin solution (2 g liter-1) was added anaerobically to 1 ml of the H2-reduced cell suspension (final melanin concentration, 0.04 mg ml-1) and read against an H2-reduced cell suspension without melanin. In order to determine if oxygen impurities interfered with the results, another cytochrome scan was conducted by adding 20 µl of aerobic 30 mM sodium bicarbonate buffer, instead of melanin, to the H2-reduced cell suspension and read against an H2-reduced cell suspension.
Growth assay with melanin as terminal electron acceptor.
Bacterial melanin, prepared as described above, was added to an anaerobic LBSM at final concentrations of 3 and 6 g liter-1. In a separate experiment, HGA melanin (6 g liter-1) was used instead of bacterial melanin. The inocula consisted of anaerobic cells of S. algae BrY that were grown for 48 h at 28°C in the LBSM with fumarate (30 mM) as the terminal electron acceptor and lactate as the carbon and energy source. Cells were harvested by centrifugation (8,000 x g, 4°C, 20 min) and washed twice with anaerobic, 30 mM bicarbonate buffer under a nitrogen atmosphere and inoculated into LBSM with melanin. Melanin reduction was determined as described above. Cell numbers were determined by direct counting with acridine orange staining and an epifluorescence microscope (14).
Data analysis.
Experiments were conducted in duplicate or triplicate. Data are presented as mean values and standard errors. Statistical analyses included Student's t test for determination of P values.
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FIG. 1. Melanin production by S. algae BrY in LBSM supplemented with tyrosine. (A) Melanin production by ( ) and growth of () an aerobic culture of S. algae BrY with 2 g of tyrosine liter-1. OD, optical density. (B) Melanin production by aerobic S. algae BrY cultures was tyrosine dependent. Data are presented as mean values and standard errors (error bars). The absence of error bars indicates that they are smaller than the corresponding symbol for the mean value.
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2, the soluble, cell-free pigment precipitated rapidly, further indicative of melanin and other humic compounds (9, 10, 34). Following acid precipitation, the washed, dialyzed, dried melanin resulted in a black powder with the following properties indicative of melanin (10): (i) insolubility in organic solvents (ethanol, chloroform, and acetone) and (ii) solubility in NaOH solutions with a pH of
10. When in solution the pigment was (i) decolorized in H2O2, (ii) precipitated by FeCl3, and (iii) retained by an 8-kDa dialysis membrane. The properties of HGA melanin were consistent with those described above for the purified pigment.
(ii) Quinone assay.
The soluble bacterial pigment and HGA melanin also reduced nitroblue tetrazolium to formazan in the presence of oxygen and excess glycine at pH 10, indicating the existence of quinoid compounds (28).
(iii) FTIR analysis.
FTIR spectroscopy was chosen to further characterize the bacterial pigment because it is regarded as the most-informative method for well-resolved and detailed structural analysis of melanins (2, 29). Figure 2 shows the FTIR spectra of the concentrated bacterial pigment and HGA melanin, which was used to confirm the pigment's identity (9). The FTIR bands from bacterial pigment (Fig. 2A) showed definite signature peaks previously reported for bacterial pyomelanin and HGA melanin produced in vitro (Fig. 2B) (9). The peaks at the following wave numbers and their corresponding structures include the bands at (i) 3,320 cm-1, a broad band indicative of the OH stretch of polymeric structures (37); (ii) 2,926 cm-1, aliphatic C
H bonds (9, 10, 20, 29); (iii) 1,650 to 1,600 cm-1, aromatic C
C conjugated with C
O and/or COO- groups (20); (iv) 1,510 cm-1, aromatic C
C bonds (20); and (v) 1,410 to 1,310 cm-1, OH groups of phenolic compounds (5).
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FIG. 2. FTIR scans of concentrated, lyophilized extracellular bacterial pigment (A) and HGA melanin (B).
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C conjugated with C
O and/or COO- groups (1,510 cm-1) produced a stronger response from bacterial melanin than from HGA melanin. This stronger response at 1,510 cm-1 for bacterial melanin has been observed in previous studies (9). Overall, these results demonstrate that the bacterial pigment has definite characteristics of humic compounds (10, 34) as well as a high degree of similarity to HGA melanin and bacterial pyomelanin (9).
MW analysis.
The MW of HGA melanin and concentrated extracellular melanin ranged from 11,000 to 17,000 and 12,000 to 14,000, respectively. These values are consistent with previous measurements of pyomelanin (42). In contrast, the MW of DOPA melanin is >1,000,000 (3).
Hydrogen oxidation study.
The use of bacterial melanin as an electron acceptor by S. algae BrY was evaluated by monitoring hydrogen-dependent melanin reduction (Fig. 3). Melanin was reduced by resting cell suspensions of S. algae BrY but was not reduced by heat-killed, washed cells with hydrogen or by hydrogen alone (Fig. 3). The amount of melanin reduced by S. algae BrY with hydrogen was significantly greater after 28 h of incubation than the amount reduced by S. algae BrY cells without hydrogen (P < 0.01). Identical results were obtained with pure chemically derived HGA melanin (data not shown). These results are consistent with the hypothesis that S. algae BrY couples the oxidation of H2 to the reduction of melanin.
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FIG. 3. S. algae BrY cell suspensions coupled with H2 oxidation to melanin reduction under anaerobic conditions. Results are shown for melanin reduction in anaerobic 30 mM sodium bicarbonate buffer by suspensions of S. algae BrY cells (109 ml-1) with H2 (), S. algae BrY cells without H2 ( ), H2 alone ( ), and heat-killed cells with H2 ( ). Data are presented as mean values and standard errors (error bars). The absence of error bars indicates that they are smaller than the corresponding symbol for the mean value.
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FIG. 4. Reduced melanin reduces HFO. Melanin reduced by S. algae BrY reduces HFO in the absence of cells, but oxidized melanin and spent, cell culture liquid without melanin do not reduce HFO. Error bars, standard errors.
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FIG. 5. The rate of HFO reduction by cell suspensions of S. algae BrY and H2 increases with increasing melanin concentrations. HFO reduction rates of S. algae BrY as a function of melanin concentration followed Michaelis-Menten kinetics (r2 = 0.98). Maximum HFO reduction rate (kmax) = 0.12 h-1; km = 0.032 g liter-1. Error bars, standard errors.
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FIG. 6. Difference spectra for whole cells of S. algae BrY. The scans from bottom to top include differences for dithionite-reduced cells minus air-oxidized cells, H2-reduced cells minus air-oxidized cells, and H2-reduced cells (with oxidized, anaerobic melanin) minus H2-reduced cells. The top scan shows an H2-reduced cell suspension (plus 20 µl of aerobic bicarbonate buffer) minus an H2-reduced cell suspension.
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FIG. 7. Melanin (6 g liter-1) as a sole terminal electron acceptor supported growth of S. algae BrY in LBSM. (A) Melanin reduction during growth of S. algae BrY cells with melanin and LBSM (), S. algae BrY cells without melanin ( ), and sterile LBSM with melanin ( ). (B) Cell growth measurements of S. algae BrY with melanin as the terminal electron acceptor (), S. algae BrY cells without melanin ( ), and S. algae BrY cells with melanin but without lactate or hydrogen ( ). Data are presented as mean values and standard errors (error bars). The absence of error bars indicates that they are smaller than the corresponding symbol for the mean value.
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Although melanin production by microorganisms is well documented, the physiological significance of microbial melanogenesis is not completely understood. Previous work on bacterial melanin of S. colwelliana and V. cholerae focused on settlement of oyster larvae (42) and virulence (7). The present study concentrated on the electrochemical properties of melanin and its relation to bioenergetics. Various types of environmental humic compounds serve as electron acceptors and electron shuttles for DMRB (19, 35). Because melanin is characterized as a humic compound (10, 34), it is therefore consistent that it possesses similar properties. Thus, melanin is well suited to function as an electron acceptor for DMRB. The production of melanin by S. algae BrY potentially offers a considerable survival advantage. S. algae BrY is a facultative anaerobe with no fermentative ability (4, 41). Its survival in the oxic-anoxic interface of marine sediments is due to the variety of compounds it uses as terminal electron acceptors during anaerobic respiration (4, 41). Because potential electron acceptors are often in the form of insoluble minerals, their bioavailability to S. algae BrY is low.
Melanin may offer several survival advantages to S. algae BrY in its natural habitat. The initiation of melanin production during late- to postexponential growth is theorized to be a response to environmental stress (7, 16). In the presence of mineral oxides, electron shuttling by even minute quantities of melanin significantly enhanced the rate of mineral reduction by S. algae BrY.
The results of this study indicate that S. algae BrY, a facultative anaerobe, can utilize extracellular melanin for increased rates of insoluble iron mineral reduction. Very low quantities of melanin are required. For instance, approximately 3 fg/cell was required to achieve 10% of the maximum HFO reduction rate. Considering the redox cycling behavior of melanin (19, 35), bacterial cells may only require trace amounts of tyrosine and oxygen to produce physiologically effective quantities of melanin. Other humic compounds also significantly enhance Fe(III) reduction, even in quantities as low as 50 µg kg of sediment-1 (24). Subsequently, when oxygen concentrations diminish, melanin could play a vital role in Fe(III) mineral reduction by S. algae BrY in the environment. Reduced melanin can also serve as a soluble metabolite capable of mineral reduction in the absence of bacteria. Since humic compounds are recalcitrant, bacterial melanin may have a long-term role in biogeochemical cycling and the physiological ecology of S. algae BrY.
These results also provide the first example of a compound produced and used as a sole terminal electron acceptor for anaerobic respiration and growth by the same organism. This portion of the study was conducted primarily to determine the bioenergetic potential of the melanin. In comparison, the melanin examined in this study performed as well as or better than other humic compounds (19). The possible presence of other bioenergetic components such as low-MW quinones or cytochromes in the partially purified bacterial melanin cannot be discounted. If present, these compounds may have contributed to electron transfer to some degree. However, pure HGA melanin served as a sole terminal electron acceptor and supported growth of S. algae BrY. The low iron concentration of bacterial and HGA melanin (<1 µM g-1) would not contribute significantly to anaerobic growth. In addition, bacterially reduced HGA melanin reduced more than 80% of HFO in comparison to that reduced by the bacterial melanin (Fig. 4). This is further evidence of the bioenergetic properties of melanin produced by S. algae BrY.
Specific quantification of the bioenergetic properties of melanin will be conducted in later studies. The high concentrations of tyrosine used in this study were to facilitate melanin production in sufficient quantities for analysis. In the natural environment tyrosine concentrations would of course be substantially lower, as would be the expected degrees of melanin production.
The ability to produce melanin and use it as a sole terminal electron acceptor for growth may allow these organisms to respire under anoxic conditions in the absence of other terminal electron acceptors. While small quantities of melanin are required for enhanced iron oxide reduction, the amount of melanin required as a sole terminal electron acceptor is much higher, considering that in this case the melanin would not likely be reoxidized and hence would not be reused. Continuous production of melanin may be possible when S. algae BrY encounters an abundance of carbon and energy, such as when it functions as a saprophyte. The availability of abundant carbon and the subsequent decrease in oxygen concentration present a physiological dilemma for a nonfermenting, facultative anaerobe. However, these environmental conditions may provide the right circumstances for melanin production to proceed. Although the complete catabolism of tyrosine provides more carbon and energy to the cell than melanin production would, in the absence of any other terminal electron acceptor, the conversion of tyrosine, ultimately to melanin, would permit respiration to continue under conditions of abundant organic carbon.
While this study has demonstrated the production and use of melanin by the DMRB S. algae BrY, the extent of this phenomenon has yet to be established in the environment. However, our data indicate that only minute amounts of melanin (femtogram quantities per cell) are required to significantly enhance HFO reduction rates. This suggests that only minute quantities of tyrosine are required to produce a functional concentration of melanin for Fe(III) oxide reduction. Possibly, tyrosine may be obtained from the environment or the de novo production of tyrosine may also contribute to melanin production. Determination of the environmental significance of melanin production on bacterial physiology and biogeochemistry offers an interesting challenge, primarily due to the low concentrations of melanin that may be produced in situ.
We thank D. R. Lovley, J. D. Coates, and Y. A. Gorby for helpful discussions; R.P. Blakemore for thoughtful insight and review of the manuscript; Thomas Laue and Kari Hartman for MW analyses; D. Brad Martin and Carol Stork for total iron determinations; and Sterling Tommilini for assistance with FTIR analyses.
Scientific Contribution number 2091 from the NH Agricultural Experimental Station. ![]()
Present address: Department of Biology, Whitworth College, Spokane, WA 99251. ![]()
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